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3MQB
Crystal Structure of Ectodomain of BST-2/Tetherin/CD317 (C2)
Structural insight into the mechanisms of enveloped virus tethering by tetherin Haitao Yanga,1, Jimin Wanga,1, Xiaofei Jiaa, Matthew W. McNattb, Trinity Zangb, Baocheng Pana, Wuyi Menga, Hong-Wei Wanga, Paul D. Bieniaszb, and Yong Xionga,2 aDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven...
3MQC
Crystal Structure of Ectodomain of BST-2/Tetherin/CD317 (P21)
Structural insight into the mechanisms of enveloped virus tethering by tetherin Haitao Yanga,1, Jimin Wanga,1, Xiaofei Jiaa, Matthew W. McNattb, Trinity Zangb, Baocheng Pana, Wuyi Menga, Hong-Wei Wanga, Paul D. Bieniaszb, and Yong Xionga,2 aDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven...
3MQD
Crystal structure of beta-ketoacyl synthase from brucella melitensis with FOL 0758, (1-methyl-1h-indazol-3-yl) methanol
Structural characterization of β-ketoacyl ACP synthase I bound to platencin and fragment screening molecules at two substrate binding sites Edward I. Patterson1, Jeffrey D. Nanson2,3, Jan Abendroth4,5, Cassie Bryan4,6, Banumathi Sankaran7, Peter J. Myler4,8, Jade K. Forwood9 1Department of Pathology, University of T...
3MQG
crystal structure of the 3-N-acetyl transferase WlbB from Bordetella petrii in complex with acetyl-CoA
Molecular Structure of WlbB, a Bacterial N-Acetyltransferase Involved in the Biosynthesis of 2,3-Diacetamido-2,3-Dideoxy-D- Mannuronic Acid James B. Thoden and Hazel M. Holden* Department of Biochemistry, University of Wisconsin, Madison, Wisconsin 53706 Abstract The pathogenic bacteria Pseudomonas aeruginosa and Borde...
3MQH
crystal structure of the 3-N-acetyl transferase WlbB from Bordetella petrii in complex with CoA and UDP-3-amino-2-acetamido-2,3-dideoxy glucuronic acid
Molecular Structure of WlbB, a Bacterial N-Acetyltransferase Involved in the Biosynthesis of 2,3-Diacetamido-2,3-Dideoxy-D- Mannuronic Acid James B. Thoden and Hazel M. Holden* Department of Biochemistry, University of Wisconsin, Madison, Wisconsin 53706 Abstract The pathogenic bacteria Pseudomonas aeruginosa and Borde...
3MQI
Human early B-cell factor 1 (EBF1) IPT/TIG domain
Structural Determination of Functional Domains in Early B-cell Factor (EBF) Family of Transcription Factors Reveals Similarities to Rel DNA-binding Proteins and a Novel Dimerization Motif*□ S Received for publication,June 2, 2010, and in revised form, June 16, 2010 Published, JBC Papers in Press,June 30, 2010, DOI 10.1...
3MQK
Cbf5-Nop10-Gar1 complex binding with 17mer RNA containing ACA trinucleotide
Structural and functional evidence of high specificity of Cbf5 for ACA trinucleotide JING ZHOU,1 BO LIANG,2 and HONG LI1,2 1Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, USA 2Institute of Molecular Biophysics, Florida State University, Tallahassee, Florida 32306, USA AB...
3MQL
Crystal structure of the fibronectin 6FnI1-2FnII7FnI fragment
Implications for Collagen Binding from the Crystallographic Structure of Fibronectin 6FnI1–2FnII7FnI □ S Received for publication,May 3, 2010, and in revised form, August 5, 2010 Published, JBC Papers in Press,August 24, 2010, DOI 10.1074/jbc.M110.139394 Miche`le C. Erat‡1, Ulrich Schwarz-Linek§, Andrew R. Pickford¶2, ...
3MQM
Crystal Structure of the Bromodomain of human ASH1L
Resource Histone Recognition and Large-Scale Structural Analysis of the Human Bromodomain Family Panagis Filippakopoulos,1,* Sarah Picaud,1 Maria Mangos,3 Tracy Keates,1 Jean-Philippe Lambert,5 Dalia Barsyte-Lovejoy,3 Ildiko Felletar,1 Rudolf Volkmer,6 Susanne Mu¨ ller,1 Tony Pawson,5,7 Anne-Claude Gingras,5,7 Cheryl H...
3MQY
SgrAI with cleaved DNA and Magnesium bound
research papers Acta Cryst. (2011). D67, 67–74 doi:10.1107/S0907444910047785 67 Acta Crystallographica Section D Biological Crystallography ISSN 0907-4449 New clues in the allosteric activation of DNA cleavage by SgrAI: structures of SgrAI bound to cleaved primary-site DNA and uncleaved secondary-site DNA Elizabeth J. ...
3MR1
Crystal structure of methionine aminopeptidase from Rickettsia prowazekii
Rickettsia prowazekii Methionine Aminopeptidase as a Promising Target for the Development of Antibacterial Agents Travis R. Helgren†, Congling Chen†, Phumvadee Wangtrakuldee†, Thomas E. Edwards‡, Bart L. Staker₴,Δ, Jan Abendroth‡, Banumathi SankaranⱵ, Nicole A. Housleyǁ, Peter J. Myler $,Δ,₸, Jonathon P. Audiaǁ, Jame...
3MR2
Human DNA polymerase eta in complex with normal DNA and incoming nucleotide (Nrm)
Structure and Mechanism of Human DNA Polymerase η Christian Biertümpfel1, Ye Zhao2,1, Yuji Kondo3, Santiago Ramón-Maiques1,6, Mark Gregory1, Jae Young Lee1,7, Chikahide Masutani3, Alan R. Lehmann5, Fumio Hanaoka3,4, and Wei Yang1 1Laboratory of Molecular Biology, NIDDK, NIH 2Institute of Nuclear-Agricultural Sciences...
3MR3
Human DNA polymerase eta - DNA ternary complex with the 3'T of a CPD in the active site (TT1)
Structure and Mechanism of Human DNA Polymerase η Christian Biertümpfel1, Ye Zhao2,1, Yuji Kondo3, Santiago Ramón-Maiques1,6, Mark Gregory1, Jae Young Lee1,7, Chikahide Masutani3, Alan R. Lehmann5, Fumio Hanaoka3,4, and Wei Yang1 1Laboratory of Molecular Biology, NIDDK, NIH 2Institute of Nuclear-Agricultural Sciences...
3MR5
Human DNA polymerase eta - DNA ternary complex with a CPD 1bp upstream of the active site (TT3)
Structure and Mechanism of Human DNA Polymerase η Christian Biertümpfel1, Ye Zhao2,1, Yuji Kondo3, Santiago Ramón-Maiques1,6, Mark Gregory1, Jae Young Lee1,7, Chikahide Masutani3, Alan R. Lehmann5, Fumio Hanaoka3,4, and Wei Yang1 1Laboratory of Molecular Biology, NIDDK, NIH 2Institute of Nuclear-Agricultural Sciences...
3MR6
Human DNA polymerase eta - DNA ternary complex with a CPD 2bp upstream of the active site (TT4)
Structure and Mechanism of Human DNA Polymerase η Christian Biertümpfel1, Ye Zhao2,1, Yuji Kondo3, Santiago Ramón-Maiques1,6, Mark Gregory1, Jae Young Lee1,7, Chikahide Masutani3, Alan R. Lehmann5, Fumio Hanaoka3,4, and Wei Yang1 1Laboratory of Molecular Biology, NIDDK, NIH 2Institute of Nuclear-Agricultural Sciences...
3MRS
Crystal structure of shikimate kinase mutant (R57A) from Helicobacter pylori
Structures of Helicobacter pylori Shikimate Kinase Reveal a Selective Inhibitor-Induced-Fit Mechanism Wen-Chi Cheng1,2., Yen-Fu Chen3., Hung-Jung Wang1,2, Kai-Cheng Hsu3, Shuang-Chih Lin1, Tzu-Jung Chen1, Jinn-Moon Yang3,4*, Wen-Ching Wang1,2* 1 Institute of Molecular and Cellular Biology and Department of Life Science...
3MRU
Crystal Structure of Aminoacylhistidine Dipeptidase from Vibrio alginolyticus
Crystal Structure and Mutational Analysis of Aminoacylhistidine Dipeptidase from Vibrio alginolyticus Reveal a New Architecture of M20 Metallopeptidases*□ S Received for publication,May 1, 2010, and in revised form, August 16, 2010 Published, JBC Papers in Press,September 6, 2010, DOI 10.1074/jbc.M110.139683 Chin-Yuan ...
3MSV
The hypoxic regulator of sterol synthesis Nro1 is a nuclear import adaptor
The hypoxic regulator of sterol synthesis Nro1 is a nuclear import adaptor Tzu-Lan Yeh*,1, Chih-Yung S. Lee*,2, L. Mario Amzel1, Peter J. Espenshade2,§, and Mario A. Bianchet1,§ 1Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, 725 N Wolfe St., Baltimore, Maryland USA 2De...
3MSW
Crystal structure of a Protein with unknown function (BF3112) from Bacteroides fragilis NCTC 9343 at 1.90 A resolution
A R T I C L E Structures of single-layer β-sheet proteins evolved from β-hairpin repeats Qingping Xu1,2,3 | Matthew Biancalana4 | Joanna C. Grant1 | Hsiu-Ju Chiu1,2 | Lukasz Jaroszewski1,5,6,7 | Mark W. Knuth1,8 | Scott A. Lesley1,8,9,10 | Adam Godzik1,5,6,7 | Marc-André Elsliger1,9 | Ashley M. Deacon1,2,11 | Ian A. Wi...
3MT5
Crystal Structure of the Human BK Gating Apparatus
Structure of the Human BK Channel Ca2+-Activation Apparatus at 3.0 Å Resolution Peng Yuan, Manuel D. Leonetti, Alexander R. Pico*, Yichun Hsiung, and Roderick MacKinnon† Laboratory of Molecular Neurobiology and Biophysics, Rockefeller University, Howard Hughes Medical Institute, 1230 York Avenue, New York, NY 10065, US...
3MT6
Structure of ClpP from Escherichia coli in complex with ADEP1
Acyldepsipeptide Antibiotics Induces the Formation of a Structured Axial Channel in ClpP: a Model for the ClpX/ClpA Bound State of ClpP Dominic Him Shun Li1,2,#, Yu Seon Chung1,#, Melanie Gloyd1,#, Ebenezer Joseph3,#, Rodolfo Ghirlando4, Gerard D. Wright1,2, Yi-Qiang Cheng5, Michael R. Maurizi3, Alba Guarné1, and Joaqu...
3MTE
Crystal Structure of 16S rRNA Methyltranferase
Structural insights into the function of aminoglycoside-resistance A1408 16S rRNA methyltransferases from antibiotic-producing and human pathogenic bacteria Rachel Macmaster1,2, Natalia Zelinskaya1, Miloje Savic1, C. Robert Rankin1 and Graeme L. Conn1,* 1Department of Biochemistry, Emory University School of Medicine, ...
3MTF
Crystal structure of the ACVR1 kinase in complex with a 2-aminopyridine inhibitor
A New Class of Small Molecule Inhibitor of BMP Signaling Caroline E. Sanvitale1, Georgina Kerr1, Apirat Chaikuad1, Marie-Christine Ramel2, Agustin H. Mohedas3, Sabine Reichert2, You Wang4, James T. Triffitt5, Gregory D. Cuny4¤, Paul B. Yu3, Caroline S. Hill2, Alex N. Bullock1* 1 Structural Genomics Consortium, Universi...
3MTL
Crystal structure of the PCTAIRE1 kinase in complex with Indirubin E804
Research Article Structure and inhibitor specificity of the PCTAIRE-family kinase CDK16 Sarah E. Dixon-Clarke1, Saifeldin N. Shehata2,3, Tobias Krojer1, Timothy D. Sharpe1,*, Frank von Delft1,4,5, Kei Sakamoto2,3 and Alex N. Bullock1 1Structural Genomics Consortium, University of Oxford, Old Road Campus, Roosevelt Driv...
3MTN
Usp21 in complex with a ubiquitin-based, USP21-specific inhibitor
A Strategy for Modulation of Enzymes in the Ubiquitin System Andreas Ernst1, George Avvakumov2, Jiefei Tong3, Yihui Fan4, Yanling Zhao4, Philipp Alberts3, Avinash Persaud3,5, John R Walker2, Ana-Mirela Neculai1, Dante Neculai2, Andrew Vorobyov1, Pankaj Garg1, Linda Beatty1, Pak-Kei Chan6, Yu-Chi Juang7, Marie- Claude L...
3MTR
Crystal structure of the Ig5-FN1 tandem of human NCAM
Structure and Mutagenesis of Neural Cell Adhesion Molecule Domains EVIDENCEFORFLEXIBILITYINTHEPLACEMENTOFPOLYSIALICACIDATTACHMENTSITES*□ S Received for publication,April 30, 2010, and in revised form, June 8, 2010 Published, JBC Papers in Press,June 23, 2010, DOI 10.1074/jbc.M110.140038 Deirdre A. Foley, Kristin G. Swa...
3MTS
Chromo Domain of Human Histone-Lysine N-Methyltransferase SUV39H1
Crystal Structure of the Human SUV39H1 Chromodomain and Its Recognition of Histone H3K9me2/3 Tao Wang1., Chao Xu2., Yanli Liu2,3, Kai Fan1, Zhihong Li2, Xing Sun2, Hui Ouyang2, Xuecheng Zhang4, Jiahai Zhang1, Yanjun Li2, Farrell MacKenzie2, Jinrong Min2,3*, Xiaoming Tu1* 1 Hefei National Laboratory for Physical Science...
3MTT
Crystal structure of iSH2 domain of human p85beta, Northeast Structural Genomics Consortium Target HR5531C
structural communications Acta Cryst. (2010). F66, 1567–1571 doi:10.1107/S1744309110041333 1567 Acta Crystallographica Section F Structural Biology and Crystallization Communications ISSN 1744-3091 Structure of the iSH2 domain of human phosphatidylinositol 3-kinase p85b subunit reveals conformational plasticity in the ...
3MTU
Structure of the Tropomyosin Overlap Complex from Chicken Smooth Muscle
Structure of the Tropomyosin Overlap Complex from Chicken Smooth Muscle: Insight into the Diversity of N-Terminus Recognition†,‡ Jeremiah Frye, Vadim A. Klenchin, and Ivan Rayment* Department of Biochemistry, University of Wisconsin, Madison, U.S.A Abstract Tropomyosin is a stereotypical α-helical coiled-coil that poly...
3MTV
The Crystal Structure of the PRRSV Nonstructural Protein Nsp1
JOURNAL OF VIROLOGY, July 2010, p. 6461–6471 Vol. 84, No. 13 0022-538X/10/$12.00 doi:10.1128/JVI.00301-10 Copyright © 2010, American Society for Microbiology. All Rights Reserved. The Crystal Structure of Porcine Reproductive and Respiratory Syndrome Virus Nonstructural Protein Nsp1 Reveals a Novel Metal-Dependent Nuc...
3MTW
Crystal structure of L-Lysine, L-Arginine carboxypeptidase Cc2672 from Caulobacter Crescentus CB15 complexed with N-methyl phosphonate derivative of L-Arginine
Functional Identification and Structure Determination of Two Novel Prolidases from cog1228 in the Amidohydrolase Superfamily Dao Feng Xiang‡, Yury PatskovskyΨ, Chengfu Xu‡, Alexander A. FedorovΨ, Elena V. FedorovΨ, Abby A. Sisco‡, J. Michael Sauder§, Stephen K. Burley§, Steven C. AlmoΨ,*, and Frank M. Raushel‡,* ‡Depar...
3MTX
Crystal structure of chicken MD-1
Crystal structure of soluble MD-1 and its interaction with lipid IVa Sung-il Yoona, Minsun Honga, Gye Won Hana,b, and Ian A. Wilsona,b,1 aDepartment of Molecular Biology and bSkaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037 Edited* by David R. Davies, National Institute of Diabe...
3MU3
Crystal structure of chicken MD-1 complexed with lipid IVa
Crystal structure of soluble MD-1 and its interaction with lipid IVa Sung-il Yoona, Minsun Honga, Gye Won Hana,b, and Ian A. Wilsona,b,1 aDepartment of Molecular Biology and bSkaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037 Edited* by David R. Davies, National Institute of Diabe...
3MU6
Inhibiting the Binding of Class IIa Histone Deacetylases to Myocyte Enhancer Factor-2 by Small Molecules
Inhibition of the function of class IIa HDACs by blocking their interaction with MEF2 Nimanthi Jayathilaka1,2,*, Aidong Han1, Kevin J. Gaffney3, Raja Dey1, Jamie A. Jarusiewicz3, Kaori Noridomi1,3, Michael A. Philips1, Xiao Lei1,2, Ju He1, Jun Ye1, Tao Gao1, Nicos A. Petasis3,4,5 and Lin Chen1,2,3,4,6,* 1Molecular and ...
3MU7
Crystal structure of the xylanase and alpha-amylase inhibitor protein (XAIP-II) from scadoxus multiflorus at 1.2 A resolution
RESEARCH ARTICLE Open Access Modulation of inhibitory activity of xylanase - a-amylase inhibitor protein (XAIP): binding studies and crystal structure determination of XAIP- II from Scadoxus multiflorus at 1.2 Å resolution Sanjit Kumar, Nagendra Singh, Biswajit Mishra, Divya Dube, Mau Sinha, S Baskar Singh, Sharmistha ...
3MUD
Structure of the Tropomyosin Overlap Complex from Chicken Smooth Muscle
Structure of the Tropomyosin Overlap Complex from Chicken Smooth Muscle: Insight into the Diversity of N-Terminus Recognition†,‡ Jeremiah Frye, Vadim A. Klenchin, and Ivan Rayment* Department of Biochemistry, University of Wisconsin, Madison, U.S.A Abstract Tropomyosin is a stereotypical α-helical coiled-coil that poly...
3MUF
Shikimate kinase from Helicobacter pylori in complex with shikimate-3-phosphate and ADP
Structures of Helicobacter pylori Shikimate Kinase Reveal a Selective Inhibitor-Induced-Fit Mechanism Wen-Chi Cheng1,2., Yen-Fu Chen3., Hung-Jung Wang1,2, Kai-Cheng Hsu3, Shuang-Chih Lin1, Tzu-Jung Chen1, Jinn-Moon Yang3,4*, Wen-Ching Wang1,2* 1 Institute of Molecular and Cellular Biology and Department of Life Science...
3MUG
Crystal structure of human Fab PG16, a broadly reactive and potent HIV-1 neutralizing antibody
Structure and function of broadly reactive antibody PG16 reveal an H3 subdomain that mediates potent neutralization of HIV-1 Robert Pejchala, Laura M. Walkerb, Robyn L. Stanfielda, Sanjay K. Phogatc, Wayne C. Koffc, Pascal Poignardb,d, Dennis R. Burtonb,d,e,1, and Ian A. Wilsona,d,f,1 Departments of aMolecular Biology a...
3MUH
Crystal structure of PG9 light chain
Structure and function of broadly reactive antibody PG16 reveal an H3 subdomain that mediates potent neutralization of HIV-1 Robert Pejchala, Laura M. Walkerb, Robyn L. Stanfielda, Sanjay K. Phogatc, Wayne C. Koffc, Pascal Poignardb,d, Dennis R. Burtonb,d,e,1, and Ian A. Wilsona,d,f,1 Departments of aMolecular Biology a...
3MUJ
Early B-cell factor 3 (EBF3) IPT/TIG and dimerization helices
Structural Determination of Functional Domains in Early B-cell Factor (EBF) Family of Transcription Factors Reveals Similarities to Rel DNA-binding Proteins and a Novel Dimerization Motif*□ S Received for publication,June 2, 2010, and in revised form, June 16, 2010 Published, JBC Papers in Press,June 30, 2010, DOI 10.1...
3MUM
Crystal Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMP
Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch†,,‡ Kathryn D. Smith1, Sarah V. Lipchock1, Alison L. Livingston2, Carly A. Shanahan1, and Scott A. Strobel1,2,* 1Department of Chemistry, Yale University, New Haven, Connecticut, USA 2Department of Molecular Biophysics and Biochemistry...
3MUP
cIAP1-BIR3 domain in complex with the Smac-mimetic compound Smac037
Recognition of Smac-mimetic compounds by the BIR domain of cIAP1 Federica Cossu,1 Francesca Malvezzi,1 Giulia Canevari,1 Eloise Mastrangelo,1,2 Daniele Lecis,3 Domenico Delia,3 Pierfausto Seneci,4,5 Carlo Scolastico,4,5 Martino Bolognesi,1 and Mario Milani1,2* 1Dipartimento di Scienze Biomolecolari e Biotecnologie, Uni...
3MUR
Crystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMP
Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch†,,‡ Kathryn D. Smith1, Sarah V. Lipchock1, Alison L. Livingston2, Carly A. Shanahan1, and Scott A. Strobel1,2,* 1Department of Chemistry, Yale University, New Haven, Connecticut, USA 2Department of Molecular Biophysics and Biochemistry...
3MUS
2A Resolution Structure of Rat Type B Cytochrome b5
Accommodating a Non-Conservative Internal Mutation by Water- Mediated Hydrogen-Bonding Between β-Sheet Strands: A Comparison of Human and Rat Type B (Mitochondrial) Cytochrome b5 Sudharsan Parthasarathy1, Adriana Altuve2, Simon Terzyan3, Xuejun Zhang3, Krzysztof Kuczera1,2, Mario Rivera2, and David R. Benson1,2,* 1D...
3MUT
Crystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMP
Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch†,,‡ Kathryn D. Smith1, Sarah V. Lipchock1, Alison L. Livingston2, Carly A. Shanahan1, and Scott A. Strobel1,2,* 1Department of Chemistry, Yale University, New Haven, Connecticut, USA 2Department of Molecular Biophysics and Biochemistry...
3MUU
Crystal structure of the Sindbis virus E2-E1 heterodimer at low pH
Structural Changes of Envelope Proteins During Alphavirus Fusion Long Li, Joyce Jose, Ye Xiang, Richard J. Kuhn, and Michael G. Rossmann Department of Biological Sciences, Purdue University, 915 W. State Street, West Lafayette, IN 47907-2054, USA Abstract Alphaviruses are enveloped RNA viruses that have a diameter of...
3MUV
Crystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-AMP
Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch†,,‡ Kathryn D. Smith1, Sarah V. Lipchock1, Alison L. Livingston2, Carly A. Shanahan1, and Scott A. Strobel1,2,* 1Department of Chemistry, Yale University, New Haven, Connecticut, USA 2Department of Molecular Biophysics and Biochemistry...
3MUW
Pseudo-atomic structure of the E2-E1 protein shell in Sindbis virus
Structural Changes of Envelope Proteins During Alphavirus Fusion Long Li, Joyce Jose, Ye Xiang, Richard J. Kuhn, and Michael G. Rossmann Department of Biological Sciences, Purdue University, 915 W. State Street, West Lafayette, IN 47907-2054, USA Abstract Alphaviruses are enveloped RNA viruses that have a diameter of...
3MV2
Crystal Structure of a-COP in Complex with e-COP
Crystal structure of α-COP in complex with ϵ-COP provides insight into the architecture of the COPI vesicular coat Kuo-Chiang Hsia and André Hoelz1 Laboratory of Cell Biology, The Rockefeller University, 1230 York Avenue, New York, NY 10065 Communicated by Günter Blobel, The Rockefeller University, New York, NY, May 10...
3MV3
Crystal Structure of a-COP in Complex with e-COP
Crystal structure of α-COP in complex with ϵ-COP provides insight into the architecture of the COPI vesicular coat Kuo-Chiang Hsia and André Hoelz1 Laboratory of Cell Biology, The Rockefeller University, 1230 York Avenue, New York, NY 10065 Communicated by Günter Blobel, The Rockefeller University, New York, NY, May 10...
3MV7
Crystal Structure of the TK3 TCR in complex with HLA-B*3501/HPVG
Article The Rockefeller University Press  $30.00 J. Exp. Med. Vol. 207 No. 7  1555-1567 www.jem.org/cgi/doi/10.1084/jem.20100603 1555 MHC molecules play a critical role in protec- tive immunity by presenting antigenic peptide fragments for T cell recognition (Davis and Bjorkman, 1988). MHC polymorphism enhances immu...
3MV8
Crystal Structure of the TK3-Gln55His TCR in complex with HLA-B*3501/HPVG
Article The Rockefeller University Press  $30.00 J. Exp. Med. Vol. 207 No. 7  1555-1567 www.jem.org/cgi/doi/10.1084/jem.20100603 1555 MHC molecules play a critical role in protec- tive immunity by presenting antigenic peptide fragments for T cell recognition (Davis and Bjorkman, 1988). MHC polymorphism enhances immu...
3MV9
Crystal Structure of the TK3-Gln55Ala TCR in complex with HLA-B*3501/HPVG
Article The Rockefeller University Press  $30.00 J. Exp. Med. Vol. 207 No. 7  1555-1567 www.jem.org/cgi/doi/10.1084/jem.20100603 1555 MHC molecules play a critical role in protec- tive immunity by presenting antigenic peptide fragments for T cell recognition (Davis and Bjorkman, 1988). MHC polymorphism enhances immu...
3MVA
Crystal structure of human MTERF1 bound to the termination sequence
Helix unwinding and base flipping enable human MTERF1 to terminate mitochondrial transcription Elena Yakubovskaya*, Edison Mejia*, James Byrnes, Elena Hambardjieva, and Miguel Garcia-Diaz1 Department of Pharmacological Sciences. Stony Brook University. BST 7-169. Stony Brook, New York, 11794-8651 Summary Defects in mit...
3MVB
Crystal structure of a triple RFY mutant of human MTERF1 bound to the termination sequence
Helix unwinding and base flipping enable human MTERF1 to terminate mitochondrial transcription Elena Yakubovskaya*, Edison Mejia*, James Byrnes, Elena Hambardjieva, and Miguel Garcia-Diaz1 Department of Pharmacological Sciences. Stony Brook University. BST 7-169. Stony Brook, New York, 11794-8651 Summary Defects in mit...
3MVC
High resolution crystal structure of the heme domain of GLB-6 from C. elegans
Structure and Properties of a Bis-Histidyl Ligated Globin from Caenorhabditis elegans† Jungjoo Yoon‡, Mark A. Herzik Jr.‡,§, Michael B. Winter‡,∥, Rosalie Tran‡,∥, Charles Olea Jr.‡,§, and Michael A. Marletta*,‡,§,∥,⊥ ‡California Institute for Quantitative Biosciences, University of California, Berkeley, California 947...
3MVD
Crystal structure of the chromatin factor RCC1 in complex with the nucleosome core particle
Structure of RCC1 chromatin factor bound to the nucleosome core particle Ravindra D. Makde1, Joseph R. England2, Hemant P. Yennawar, and Song Tan Center for Eukaryotic Gene Regulation, Department of Biochemistry & Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA Abstract The small ...
3MVI
Crystal structure of holo mADA at 1.6 A resolution
The Role of Zn2+ on the Structure and Stability of Murine Adenosine Deaminase Weiling Niu†,#, Qin Shu*,#, Zhiwei Chen†, Scott Mathews*, Enrico Di Cera†, and Carl Frieden* *Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110 †Edward A. Doisy Department of Bi...
3MVR
Crystal Structure of cytochrome P450 2B4-H226Y in a closed conformation
Plasticity of Cytochrome P450 2B4 as Investigated by Hydrogen-Deuterium Exchange Mass Spectrometry and X-ray Crystallography*□ S Received for publication,August 31, 2010, and in revised form, September 27, 2010 Published, JBC Papers in Press,September 28, 2010, DOI 10.1074/jbc.M110.180646 P. Ross Wilderman‡1,2, Manish ...
3MVS
Structure of the N-terminus of Cadherin 23
Structure of the N terminus of cadherin 23 reveals a new adhesion mechanism for a subset of cadherin superfamily members Heather M. Elledgea,b,1, Piotr Kazmierczaka,b,1, Peter Clarka,1, Jeremiah S. Josepha, Anand Kolatkara, Peter Kuhna,2, and Ulrich Müllera,b,2 aDepartment of Cell Biology and bDorris Neuroscience Cente...
3MVT
Crystal structure of apo mADA at 2.2A resolution
The Role of Zn2+ on the Structure and Stability of Murine Adenosine Deaminase Weiling Niu†,#, Qin Shu*,#, Zhiwei Chen†, Scott Mathews*, Enrico Di Cera†, and Carl Frieden* *Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110 †Edward A. Doisy Department of Bi...
3MVV
Crystal structure of Staphylococcal nuclease variant Delta+PHS F34A at cryogenic temperature
Cavities determine the pressure unfolding of proteins Julien Rochea,1, Jose A. Carob,1, Douglas R. Norbertoa,c, Philippe Barthea, Christian Roumestanda, Jamie L. Schlessmand, Angel E. Garciae, Bertrand García-Moreno E.b, and Catherine A. Royera,2 aCentre de Biochimie Structurale, Institut National pour la Santé et la R...
3MW2
Crystal structure of beta-neurexin 1 with the splice insert 4
Splice form-dependence of β-neurexin/neuroligin binding interactions Jesko Koehnke1,†, Phinikoula S. Katsamba1,2,†, Goran Ahlsen1, Fabiana Bahna1,2, Jeremie Vendome1,2, Barry Honig1,2,*, Lawrence Shapiro1,3,*, and Xiangshu Jin1,2,† 1 Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY...
3MW3
Crystal structure of beta-neurexin 2 with the splice insert 4
Splice form-dependence of β-neurexin/neuroligin binding interactions Jesko Koehnke1,†, Phinikoula S. Katsamba1,2,†, Goran Ahlsen1, Fabiana Bahna1,2, Jeremie Vendome1,2, Barry Honig1,2,*, Lawrence Shapiro1,3,*, and Xiangshu Jin1,2,† 1 Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY...
3MW4
Crystal structure of beta-neurexin 3 without the splice insert 4
Splice form-dependence of β-neurexin/neuroligin binding interactions Jesko Koehnke1,†, Phinikoula S. Katsamba1,2,†, Goran Ahlsen1, Fabiana Bahna1,2, Jeremie Vendome1,2, Barry Honig1,2,*, Lawrence Shapiro1,3,*, and Xiangshu Jin1,2,† 1 Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY...
3MW6
Crystal structure of NMB1681 from Neisseria meningitidis MC58, a FinO-like RNA chaperone
RNA Biology 7:6, 812-819; November/December 2010; © 2010 Landes Bioscience Research paper 812 RNA Biology Volume 7 Issue 6 *Correspondence to: J.N. Mark Glover; Email: mark.glover@ualberta.ca Submitted: 09/03/10; Revised: 09/16/10; Accepted: 09/18/10 Previously published online: www.landesbioscience.com/journals/rna...
3MWD
Truncated Human ATP-Citrate Lyase with Citrate Bound
Identification of the Citrate-binding Site of Human ATP-Citrate Lyase Using X-ray Crystallography*□ S Received for publication,October 22, 2009, and in revised form, May 10, 2010 Published, JBC Papers in Press,June 17, 2010, DOI 10.1074/jbc.M109.078667 Tianjun Sun, Koto Hayakawa, Katherine S. Bateman1, and Marie E. Fra...
3MWE
Truncated Human ATP-Citrate Lyase with Tartrate Bound
Identification of the Citrate-binding Site of Human ATP-Citrate Lyase Using X-ray Crystallography*□ S Received for publication,October 22, 2009, and in revised form, May 10, 2010 Published, JBC Papers in Press,June 17, 2010, DOI 10.1074/jbc.M109.078667 Tianjun Sun, Koto Hayakawa, Katherine S. Bateman1, and Marie E. Fra...
3MWH
The 1.4 Ang crystal structure of the ArsD arsenic metallochaperone provides insights into its interactions with the ArsA ATPase
The 1.4 Å crystal structure of the ArsD arsenic metallochaperone provides insights into its interaction with the ArsA ATPase† Jun Ye‡,#, A. Abdul Ajees§,#, Jianbo Yang‡, and Barry P. Rosen*,§ ‡Department of Biochemistry and Molecular Biology, Wayne State University, School of Medicine, Detroit, MI 48201 §Department of ...
3MWM
Graded expression of zinc-responsive genes through two regulatory zinc-binding sites in Zur
Graded expression of zinc-responsive genes through two regulatory zinc-binding sites in Zur Jung-Ho Shina,1, Hoi Jong Jungb,1, Young Jun Anb, Yoo-Bok Choa, Sun-Shin Chab,c,2, and Jung-Hye Roea,2 aLaboratory of Molecular Microbiology, School of Biological Sciences, and Institute of Microbiology, Seoul National Universit...
3MWO
Human carbonic anhydrase II in a doubled monoclinic cell: a re-determination
short communications 950 doi:10.1107/S0907444910023723 Acta Cryst. (2010). D66, 950–952 Acta Crystallographica Section D Biological Crystallography ISSN 0907-4449 Emerging from pseudo-symmetry: the redetermination of human carbonic anhydrase II in monoclinic P21 with a doubled a axis Arthur H. Robbins, John F. Domsic, ...
3MWP
Nucleoprotein structure of lassa fever virus
Cap binding and immune evasion revealed by Lassa nucleoprotein structure Xiaoxuan Qi1, Shuiyun Lan2, Wenjian Wang3, Lisa McLay Schelde2, Haohao Dong1, Gregor D. Wallat1, Hinh Ly2,*, Yuying Liang2,*, and Changjiang Dong1,* 1Biomedical Sciences Research Complex, School of Chemistry, University of St. Andrews, North Ha...
3MWS
Crystal Structure of Group N HIV-1 Protease
Autocatalytic maturation, physical/ chemical properties, and crystal structure of Group N HIV-1 protease: Relevance to drug resistance Jane M. Sayer,1 Johnson Agniswamy,2 Irene T. Weber,2 and John M. Louis1* 1Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Inst...
3MWT
Crystal structure of Lassa fever virus nucleoprotein in complex with Mn2+
Cap binding and immune evasion revealed by Lassa nucleoprotein structure Xiaoxuan Qi1, Shuiyun Lan2, Wenjian Wang3, Lisa McLay Schelde2, Haohao Dong1, Gregor D. Wallat1, Hinh Ly2,*, Yuying Liang2,*, and Changjiang Dong1,* 1Biomedical Sciences Research Complex, School of Chemistry, University of St. Andrews, North Ha...
3MWU
Activated Calcium-Dependent Protein Kinase 1 from Cryptosporidium parvum (CpCDPK1) in complex with bumped kinase inhibitor RM-1-95
Published on Web Date: July 07, 2010 r 2010 American Chemical Society 331 DOI: 10.1021/ml100096t |ACS Med. Chem. Lett. 2010, 1, 331–335 pubs.acs.org/acsmedchemlett Discovery of Potent and Selective Inhibitors of CDPK1 from C. parvum and T. gondii Ryan C. Murphy,†,O Kayode K. Ojo,‡,O Eric T. Larson,§, ) Alejandro Castel...
3MWY
Crystal structure of the chromodomain-ATPase portion of the yeast Chd1 chromatin remodeler
The Chromodomains of the Chd1 Chromatin Remodeler Regulate DNA Access to the ATPase Motor Glenn Hauk*, Jeffrey N. McKnight*, Ilana M. Nodelman, and Gregory D. Bowman1 T.C. Jenkins Department of Biophysics, Johns Hopkins University Baltimore, Maryland 21218-2685, USA Summary Chromatin remodelers are ATP-driven machines ...
3MWZ
Crystal structure of the selenomethionine derivative of the L 22,47,100 M mutant of sialostatin L2
The crystal structures of two salivary cystatins from the tick Ixodes scapularis and the effect of these inhibitors on the establishment of Borrelia burgdorferi infection in a murine model Michalis Kotsyfakis1,2, Helena Horka1,3, Jiri Salat3,4, and John F. Andersen2 1 Laboratory of Genomics and Proteomics of Disease Ve...
3MX0
Crystal Structure of EphA2 ectodomain in complex with ephrin-A5
Architecture of Eph receptor clusters Juha P. Himanena,1, Laila Yermekbayevab,1, Peter W. Janesc,1, John R. Walkerb,1, Kai Xua, Lakmali Atapattuc, Kanagalaghatta R. Rajashankard, Anneloes Mensingac, Martin Lackmannc,2, Dimitar B. Nikolova,2, and Sirano Dhe-Paganonb,e,2 aStructural Biology Program, Memorial Sloan-Ketter...
3MX1
The structure of GIY-YIG endonuclease R.Eco29kI
Folding, DNA recognition and function of GIY-YIG endonucleases: crystal structures of R.Eco29kI Amanda Nga-Sze Mak1, Abigail R. Lambert1,2, and Barry L. Stoddard1,3 1 Division of Basic Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Ave. N. A3-025 Seattle, WA 98109 Abstract The GIY-YIG endonuclease fami...
3MX2
Lassa fever virus Nucleoprotein complexed with dTTP
Cap binding and immune evasion revealed by Lassa nucleoprotein structure Xiaoxuan Qi1, Shuiyun Lan2, Wenjian Wang3, Lisa McLay Schelde2, Haohao Dong1, Gregor D. Wallat1, Hinh Ly2,*, Yuying Liang2,*, and Changjiang Dong1,* 1Biomedical Sciences Research Complex, School of Chemistry, University of St. Andrews, North Ha...
3MX4
DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29KI inactive variant E142Q
Folding, DNA recognition and function of GIY-YIG endonucleases: crystal structures of R.Eco29kI Amanda Nga-Sze Mak1, Abigail R. Lambert1,2, and Barry L. Stoddard1,3 1 Division of Basic Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Ave. N. A3-025 Seattle, WA 98109 Abstract The GIY-YIG endonuclease fami...
3MX5
Lassa fever virus nucleoprotein complexed with UTP
Cap binding and immune evasion revealed by Lassa nucleoprotein structure Xiaoxuan Qi1, Shuiyun Lan2, Wenjian Wang3, Lisa McLay Schelde2, Haohao Dong1, Gregor D. Wallat1, Hinh Ly2,*, Yuying Liang2,*, and Changjiang Dong1,* 1Biomedical Sciences Research Complex, School of Chemistry, University of St. Andrews, North Ha...
3MX6
Crystal structure of methionine aminopeptidase from Rickettsia prowazekii bound to methionine
Rickettsia prowazekii Methionine Aminopeptidase as a Promising Target for the Development of Antibacterial Agents Travis R. Helgren†, Congling Chen†, Phumvadee Wangtrakuldee†, Thomas E. Edwards‡, Bart L. Staker₴,Δ, Jan Abendroth‡, Banumathi SankaranⱵ, Nicole A. Housleyǁ, Peter J. Myler $,Δ,₸, Jonathon P. Audiaǁ, Jame...
3MX9
Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus
Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus Ine´ s G. Mun˜ oz1, Jesu´ s Prieto1, Sunita Subramanian1, Javier Coloma1, Pilar Redondo1, Maider Villate2, Nekane Merino2, Marco Marenchino3, Marco D’Abramo4, Francesco L. Gervasio4, Sylvestre Grizot5, Fayza Daboussi5, Julianne Smit...
3MXA
Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus
Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus Ine´ s G. Mun˜ oz1, Jesu´ s Prieto1, Sunita Subramanian1, Javier Coloma1, Pilar Redondo1, Maider Villate2, Nekane Merino2, Marco Marenchino3, Marco D’Abramo4, Francesco L. Gervasio4, Sylvestre Grizot5, Fayza Daboussi5, Julianne Smit...
3MXB
Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus
Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus Ine´ s G. Mun˜ oz1, Jesu´ s Prieto1, Sunita Subramanian1, Javier Coloma1, Pilar Redondo1, Maider Villate2, Nekane Merino2, Marco Marenchino3, Marco D’Abramo4, Francesco L. Gervasio4, Sylvestre Grizot5, Fayza Daboussi5, Julianne Smit...
3MXD
Crystal structure of HIV-1 protease inhibitor KC53 in complex with wild-type protease
Structure-Based Design, Synthesis and Structure-Activity Relationship Studies of HIV-1 Protease Inhibitors Incorporating Phenyloxazolidinones Akbar Ali†,‡,§, G. S. Kiran Kumar Reddy†,‡,§, Madhavi N. L. Nalam‡, Saima Ghafoor Anjum†,‡, Hong Cao†,‡, Celia A. Schiffer‡,*, and Tariq M. Rana†,‡,*,¶ Celia A. Schiffer: Celia.S...
3MXE
Crystal structure of HIV-1 protease inhibitor, KC32 complexed with wild-type protease
Structure-Based Design, Synthesis and Structure-Activity Relationship Studies of HIV-1 Protease Inhibitors Incorporating Phenyloxazolidinones Akbar Ali†,‡,§, G. S. Kiran Kumar Reddy†,‡,§, Madhavi N. L. Nalam‡, Saima Ghafoor Anjum†,‡, Hong Cao†,‡, Celia A. Schiffer‡,*, and Tariq M. Rana†,‡,*,¶ Celia A. Schiffer: Celia.S...
3MXF
Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor JQ1
Selective inhibition of BET bromodomains Panagis Filippakopoulos1,*, Jun Qi2,*, Sarah Picaud1,*, Yao Shen3, William B. Smith2, Oleg Fedorov1, Elizabeth M. Morse2, Tracey Keates1, Tyler T. Hickman4, Ildiko Felletar1, Martin Philpott1, Shonagh Munro5, Michael R. McKeown2,9, Yuchuan Wang6, Amanda L. Christie7, Nathan W...
3MXG
Structure of Shiga Toxin type 2 (Stx2) B Pentamer Mutant Q40L
Molecular Basis of Differential B-Pentamer Stability of Shiga Toxins 1 and 2 Deborah G. Conrady., Michael J. Flagler.¤a, David R. Friedmann.¤b, Bradley D. Vander Wielen, Rhett A. Kovall*, Alison A. Weiss*, Andrew B. Herr* Department of Molecular Genetics, Biochemistry and Microbiology, University of Cincinnati College ...
3MXH
Native structure of a c-di-GMP riboswitch from V. cholerae
Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch†,,‡ Kathryn D. Smith1, Sarah V. Lipchock1, Alison L. Livingston2, Carly A. Shanahan1, and Scott A. Strobel1,2,* 1Department of Chemistry, Yale University, New Haven, Connecticut, USA 2Department of Molecular Biophysics and Biochemistry...
3MXL
Crystal structure of nitrososynthase from Micromonospora carbonacea var. africana
Structure and mechanism of ORF36, an Aminosugar Oxidizing Enzyme in Everninomicin Biosynthesis† Jessica L. Vey1, Ahmad Al-Mestarihi2, Yunfeng Hu2,&, Michael A. Funk1,@, Brian O. Bachmann2,3,*, and T. M. Iverson1,3,* 1Department of Pharmacology, Vanderbilt University Medical Center, Nashville, TN 37232, USA 2Department ...
3MXN
Crystal structure of the RMI core complex
Structure and cellular roles of the RMI core complex from the Bloom syndrome dissolvasome Kelly A. Hoadley1, Dongyi Xu2, Yutong Xue2, Kenneth A. Satyshur1, Weidong Wang2,‡, and James L. Keck1,‡ 1 Department of Biomolecular Chemistry, 550 Medical Science Center, 1300 University Avenue, University of Wisconsin School of ...
3MXO
Crystal structure oh human phosphoglycerate mutase family member 5 (PGAM5)
Article Structures of PGAM5 Provide Insight into Active Site Plasticity and Multimeric Assembly Graphical Abstract Highlights d PGAM5 catalytic domain shares phosphoglycerate mutase fold and forms stable dimer d WDPNWD motif allosterically activates the fully active dodecameric form d Crystal structures reveal conforma...
3MXP
Crystal structure of Staphylococcal nuclease variant Delta+PHS T62A at cryogenic temperature
Cavities determine the pressure unfolding of proteins Julien Rochea,1, Jose A. Carob,1, Douglas R. Norbertoa,c, Philippe Barthea, Christian Roumestanda, Jamie L. Schlessmand, Angel E. Garciae, Bertrand García-Moreno E.b, and Catherine A. Royera,2 aCentre de Biochimie Structurale, Institut National pour la Santé et la R...
3MXR
SHV-1 beta-lactamase complex with compound 1
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, Jan. 2011, p. 174–183 Vol. 55, No. 1 0066-4804/11/$12.00 doi:10.1128/AAC.00930-10 Copyright © 2011, American Society for Microbiology. All Rights Reserved. Novel Insights into the Mode of Inhibition of Class A SHV-1 -Lactamases Revealed by Boronic Acid Transition State Inhibitors...
3MXS
SHV-1 beta-lactamase complex with compound 2
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, Jan. 2011, p. 174–183 Vol. 55, No. 1 0066-4804/11/$12.00 doi:10.1128/AAC.00930-10 Copyright © 2011, American Society for Microbiology. All Rights Reserved. Novel Insights into the Mode of Inhibition of Class A SHV-1 -Lactamases Revealed by Boronic Acid Transition State Inhibitors...
3MXV
Crystal structure of fab fragment of anti-Shh 5E1 chimera
Hedgehog Pathway Antagonist 5E1 Binds Hedgehog at the Pseudo-active Site Received for publication,February 8, 2010, and in revised form, May 14, 2010 Published, JBC Papers in Press,May 26, 2010, DOI 10.1074/jbc.M110.112284 Henry R. Maun‡, Xiaohui Wen§, Andreas Lingel‡, Frederic J. de Sauvage§, Robert A. Lazarus‡, Suzie...
3MXW
Crystal structure Sonic hedgehog bound to the 5E1 fab fragment
Hedgehog Pathway Antagonist 5E1 Binds Hedgehog at the Pseudo-active Site Received for publication,February 8, 2010, and in revised form, May 14, 2010 Published, JBC Papers in Press,May 26, 2010, DOI 10.1074/jbc.M110.112284 Henry R. Maun‡, Xiaohui Wen§, Andreas Lingel‡, Frederic J. de Sauvage§, Robert A. Lazarus‡, Suzie...
3MY0
Crystal structure of the ACVRL1 (ALK1) kinase domain bound to LDN-193189
BRIEF COMMUNICATION A small molecule targeting ALK1 prevents Notch cooperativity and inhibits functional angiogenesis Georgina Kerr • Helen Sheldon • Apirat Chaikuad • Ivan Alfano • Frank von Delft • Alex N. Bullock • Adrian L. Harris Received: 20 August 2014 / Accepted: 22 December 2014 / Published online: 4 January 2...