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3MY2
Crystal structure of LptC
Structure and Functional Analysis of LptC, a Conserved Membrane Protein Involved in the Lipopolysaccharide Export Pathway in Escherichia coli*□ S Received for publication,May 13, 2010, and in revised form, July 13, 2010 Published, JBC Papers in Press,August 18, 2010, DOI 10.1074/jbc.M110.144709 An X. Tran‡1, Changjiang...
3MYA
Crystal Structure of HP67 H41F - P61
On Unsatisfied Hydrogen Bonds in the N-Terminal Subdomain of Villin Headpiece Jeffrey W. Brown1, Jeremiah D. Farelli1,2, and C. James McKnight1 1Department of Physiology and Biophysics, Boston University School of Medicine, 700 Albany Street, W302, Boston, MA 02118 Abstract Villin headpiece is a small, autonomously fol...
3MYB
Crystal structure of enoyl-coa hydratase mycobacterium smegmatis
Increasing the Structural Coverage of Tuberculosis Drug Targets Loren Baugha,b, Isabelle Phana,b, Darren W. Begleya,c, Matthew C. Cliftona,c, Brianna Armoura,c, David M. Dranowa,c, Brandy M. Taylora,c, Marvin M. Muruthia,c, Jan Abendrotha,c, James W. Fairmanc, David Fox IIIc, Shellie H. Dieterichc, Bart L. Stakera,b,...
3MYC
Crystal Structure of HP67 H41F - P212121
On Unsatisfied Hydrogen Bonds in the N-Terminal Subdomain of Villin Headpiece Jeffrey W. Brown1, Jeremiah D. Farelli1,2, and C. James McKnight1 1Department of Physiology and Biophysics, Boston University School of Medicine, 700 Albany Street, W302, Boston, MA 02118 Abstract Villin headpiece is a small, autonomously fol...
3MYD
Structure of the Cytoplasmic domain of FlhA from Helicobacter pylori
Structure of the Cytoplasmic Domain of the Flagellar Secretion Apparatus Component FlhA from Helicobacter pylori*□ S Received for publication,March 2, 2010, and in revised form, April 21, 2010 Published, JBC Papers in Press,May 4, 2010, DOI 10.1074/jbc.M110.119412 Stanley A. Moore1 and Yunhua Jia From the Department of...
3MYG
Aurora A Kinase complexed with SCH 1473759
Published on Web Date: June 07, 2010 r 2010 American Chemical Society 214 DOI: 10.1021/ml100063w |ACS Med. Chem. Lett. 2010, 1, 214–218 pubs.acs.org/acsmedchemlett Discovery of a Potent, Injectable Inhibitor of Aurora Kinases Based on the Imidazo-[1,2-a]-Pyrazine Core Tao Yu,† Jayaram R. Tagat,*,† Angela D. Kerekes,† R...
3MYH
Insights into the Importance of Hydrogen Bonding in the Gamma-Phosphate Binding Pocket of Myosin: Structural and Functional Studies of Ser236
pubs.acs.org/Biochemistry Published on Web 05/11/2010 r 2010 American Chemical Society Biochemistry 2010, 49, 4897–4907 4897 DOI: 10.1021/bi1001344 Insights into the Importance of Hydrogen Bonding in the γ-Phosphate Binding Pocket of Myosin: Structural and Functional Studies of Serine 236†,‡ Jeremiah J. Frye,§ Vadim A....
3MYI
Human metavinculin tail domain
A Helix Replacement Mechanism Directs Metavinculin Functions Erumbi S. Rangarajan, Jun Hyuck Lee, S. D. Yogesha, Tina Izard* Cell Adhesion Laboratory, Department of Cancer Biology, The Scripps Research Institute, Scripps Florida, Jupiter, Florida, United States of America Abstract Cells require distinct adhesion comple...
3MYJ
Human Class I MHC HLA-A2 in complex with the WT-1 (126-134) (R1Y) peptide variant.
Structures of native and affinity-enhanced WT1 epitopes bound to HLA-A*0201: implications for WT1-based cancer therapeutics Oleg Y. Borbulevych1, Priscilla Do1, and Brian M. Baker1,2,* 1 Department of Chemistry and Biochemistry, 251, Nieuwland Science Hall, University of Notre Dame, Notre Dame, IN 46556 2 Walther Cance...
3MYK
Insights into the Importance of Hydrogen Bonding in the Gamma-Phosphate Binding Pocket of Myosin: Structural and Functional Studies of Ser236
pubs.acs.org/Biochemistry Published on Web 05/11/2010 r 2010 American Chemical Society Biochemistry 2010, 49, 4897–4907 4897 DOI: 10.1021/bi1001344 Insights into the Importance of Hydrogen Bonding in the γ-Phosphate Binding Pocket of Myosin: Structural and Functional Studies of Serine 236†,‡ Jeremiah J. Frye,§ Vadim A....
3MYL
Insights into the Importance of Hydrogen Bonding in the Gamma-Phosphate Binding Pocket of Myosin: Structural and Functional Studies of Ser236
pubs.acs.org/Biochemistry Published on Web 05/11/2010 r 2010 American Chemical Society Biochemistry 2010, 49, 4897–4907 4897 DOI: 10.1021/bi1001344 Insights into the Importance of Hydrogen Bonding in the γ-Phosphate Binding Pocket of Myosin: Structural and Functional Studies of Serine 236†,‡ Jeremiah J. Frye,§ Vadim A....
3MYM
Mutation of Methionine-86 in Dehaloperoxidase-hemoglobin: Effects of the Asp-His-Fe Triad in a 3/3 Globin
The Functional Consequences of the Creation of an Asp-His-Fe Triad in a 3/3 Globin†,,‡ Edward L. D’Antonio, Jennifer D’Antonio, Vesna de Serrano, Hanna Gracz, Matthew K. Thompson, Reza A. Ghiladi, Edmond F. Bowden*, and Stefan Franzen* Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204 Abs...
3MYN
Mutation of Methionine-86 in Dehaloperoxidase-hemoglobin: Effects of the Asp-His-Fe Triad in a 3/3 Globin
The Functional Consequences of the Creation of an Asp-His-Fe Triad in a 3/3 Globin†,,‡ Edward L. D’Antonio, Jennifer D’Antonio, Vesna de Serrano, Hanna Gracz, Matthew K. Thompson, Reza A. Ghiladi, Edmond F. Bowden*, and Stefan Franzen* Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204 Abs...
3MYU
Mycoplasma genitalium MG289
Insights into Mycoplasma genitalium Metabolism Revealed by the Structure of MG289, an Extracytoplasmic Thiamine Binding Lipoprotein Katherine H. Sippel1, Balasubramanian Venkatakrishnan1, Susan K. Boehlein2, Banumathi Sankaran3, Jeanne G. Quirit1, Lakshamanan Govindasamy1, Mavis Agbandje-McKenna1, Steve Goodison4,§, Ch...
3MYY
Structure of E. Coli CheY mutant A113P bound to Beryllium fluoride
The role of position K+4 in phosphorylation and dephosphorylation reaction kinetics of the CheY response regulator Clay A. Foster†,1, Ruth E. Silversmith, Robert M. Immormino†,2, Luke R. Vass†,3, Emily N. Kennedy, Yael Pazy†,4, Edward J. Collins†,5, Robert B. Bourret* Department of Microbiology and Immunology, Unive...
3MYZ
Protein induced photophysical changes to the amyloid indicator dye, thioflavin T
Protein-induced photophysical changes to the amyloid indicator dye thioflavin T Leslie S. Wolfe1, Matthew F. Calabrese1, Abhinav Nath1, Dorottya V. Blaho, Andrew D. Miranker2, and Yong Xiong2 Department of Molecular Biophysics and Biochemistry, Yale University, 260 Whitney Avenue, New Haven, CT 06520-8114 Edited by Jos...
3MZ3
Crystal structure of Co2+ HDAC8 complexed with M344
Structures of Metal-Substituted Human Histone Deacetylase 8 Provide Mechanistic Inferences on Biological Function,†,‡ Daniel P. Dowling§, Samuel G. Gattis£, Carol A. Fierke£, and David W. Christianson§,* § Roy and Diana Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, Philadelphia, PA 19104-63...
3MZ4
Crystal structure of D101L Mn2+ HDAC8 complexed with M344
Structures of Metal-Substituted Human Histone Deacetylase 8 Provide Mechanistic Inferences on Biological Function,†,‡ Daniel P. Dowling§, Samuel G. Gattis£, Carol A. Fierke£, and David W. Christianson§,* § Roy and Diana Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, Philadelphia, PA 19104-63...
3MZ5
Crystal structure of Staphylococcal nuclease variant Delta+PHS L103A at cryogenic temperature
Cavities determine the pressure unfolding of proteins Julien Rochea,1, Jose A. Carob,1, Douglas R. Norbertoa,c, Philippe Barthea, Christian Roumestanda, Jamie L. Schlessmand, Angel E. Garciae, Bertrand García-Moreno E.b, and Catherine A. Royera,2 aCentre de Biochimie Structurale, Institut National pour la Santé et la R...
3MZ6
Crystal structure of D101L Fe2+ HDAC8 complexed with M344
Structures of Metal-Substituted Human Histone Deacetylase 8 Provide Mechanistic Inferences on Biological Function,†,‡ Daniel P. Dowling§, Samuel G. Gattis£, Carol A. Fierke£, and David W. Christianson§,* § Roy and Diana Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, Philadelphia, PA 19104-63...
3MZ7
Crystal structure of D101L Co2+ HDAC8 complexed with M344
Structures of Metal-Substituted Human Histone Deacetylase 8 Provide Mechanistic Inferences on Biological Function,†,‡ Daniel P. Dowling§, Samuel G. Gattis£, Carol A. Fierke£, and David W. Christianson§,* § Roy and Diana Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, Philadelphia, PA 19104-63...
3MZ8
Crystal Structure of Zinc-Bound Natrin From Naja atra
Cobra CRISP Functions as an Inflammatory Modulator via a Novel Zn2- and Heparan Sulfate-dependent Transcriptional Regulation of Endothelial Cell Adhesion Molecules* Received for publication,May 20, 2010, and in revised form, September 11, 2010 Published, JBC Papers in Press,October 2, 2010, DOI 10.1074/jbc.M110.146290...
3MZD
Structure of penicillin-binding protein 5 from E. coli: cloxacillin acyl-enzyme complex
Crystal structures of covalent complexes of β-lactam antibiotics with E. coli penicillin-binding protein 5: toward an understanding of antibiotic specificity† George Nicola1,§, Joshua Tomberg2, R. F. Pratt3, Robert A. Nicholas2, and Christopher Davies1,* 1Department of Biochemistry, Medical University of South Carolina...
3MZE
Structure of penicillin-binding protein 5 from E.coli: cefoxitin acyl-enzyme complex
Crystal structures of covalent complexes of β-lactam antibiotics with E. coli penicillin-binding protein 5: toward an understanding of antibiotic specificity† George Nicola1,§, Joshua Tomberg2, R. F. Pratt3, Robert A. Nicholas2, and Christopher Davies1,* 1Department of Biochemistry, Medical University of South Carolina...
3MZF
Structure of penicillin-binding protein 5 from E. coli: imipenem acyl-enzyme complex
Crystal structures of covalent complexes of β-lactam antibiotics with E. coli penicillin-binding protein 5: toward an understanding of antibiotic specificity† George Nicola1,§, Joshua Tomberg2, R. F. Pratt3, Robert A. Nicholas2, and Christopher Davies1,* 1Department of Biochemistry, Medical University of South Carolina...
3MZG
Crystal structure of a human prolactin receptor antagonist in complex with the extracellular domain of the human prolactin receptor
Two Independent Histidines, One in Human Prolactin and One in Its Receptor, Are Critical for pH-dependent Receptor Recognition and Activation*□ S Received for publication,August 4, 2010, and in revised form, September 8, 2010 Published, JBC Papers in Press,September 30, 2010, DOI 10.1074/jbc.M110.172072 Mandar V. Kulka...
3MZI
Crystallographic structure of the pseudo-Signaling State of the BLUF Photoreceptor PixD (slr1694) Y8F mutant
Mutational And Structural Studies Of The PixD BLUF Output Signal That Affects Light-Regulated Interactions With PixE Hua Yuan, Vladimira Dragnea, Qiong Wu, Kevin H. Gardner, and Carl E. Bauer* Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN 47405, Department of Biochemistry, Unive...
3MZK
Sec13/Sec16 complex, S.cerevisiae
JCB: Article The Rockefeller University Press   $30.00 J. Cell Biol. Vol. 190 No. 3  347–361 www.jcb.org/cgi/doi/10.1083/jcb.201003092 JCB 347 Correspondence to Thomas U. Schwartz: tus@mit.edu Abbreviations used in this paper: CCD, central conserved domain; NE, nuclear envelope; NPC, nuclear pore complex; PEG, polyeth...
3MZL
Sec13/Sec31 edge element, loop deletion mutant
JCB: Article The Rockefeller University Press   $30.00 J. Cell Biol. Vol. 190 No. 3  347–361 www.jcb.org/cgi/doi/10.1083/jcb.201003092 JCB 347 Correspondence to Thomas U. Schwartz: tus@mit.edu Abbreviations used in this paper: CCD, central conserved domain; NE, nuclear envelope; NPC, nuclear pore complex; PEG, polyeth...
3MZQ
RNase crystals grown by the hanging drop method
short communications J. Appl. Cryst. (2010). 43, 1513–1518 doi:10.1107/S0021889810040409 1513 Journal of Applied Crystallography ISSN 0021-8898 Received 5 June 2010 Accepted 8 October 2010 # 2010 International Union of Crystallography Printed in Singapore – all rights reserved Diffraction study of protein crystals grow...
3MZR
RNase crystals grown in loops/micromounts
short communications J. Appl. Cryst. (2010). 43, 1513–1518 doi:10.1107/S0021889810040409 1513 Journal of Applied Crystallography ISSN 0021-8898 Received 5 June 2010 Accepted 8 October 2010 # 2010 International Union of Crystallography Printed in Singapore – all rights reserved Diffraction study of protein crystals grow...
3MZS
Crystal Structure of Cytochrome P450 CYP11A1 in complex with 22-hydroxy-cholesterol
Structural Basis for Three-step Sequential Catalysis by the Cholesterol Side Chain Cleavage Enzyme CYP11A1*□ S Received for publication,September24,2010,andinrevisedform,November24,2010 Published, JBC Papers in Press,December15,2010,DOI10.1074/jbc.M110.188433 Natalia Mast‡, Andrew J. Annalora§, David T. Lodowski¶, Krzy...
3MZT
Protein-induced photophysical changes to the amyloid indicator dye, thioflavin T
Protein-induced photophysical changes to the amyloid indicator dye thioflavin T Leslie S. Wolfe1, Matthew F. Calabrese1, Abhinav Nath1, Dorottya V. Blaho, Andrew D. Miranker2, and Yong Xiong2 Department of Molecular Biophysics and Biochemistry, Yale University, 260 Whitney Avenue, New Haven, CT 06520-8114 Edited by Jos...
3MZV
Crystal structure of a decaprenyl diphosphate synthase from Rhodobacter capsulatus
Prediction of function for the polyprenyl transferase subgroup in the isoprenoid synthase superfamily Frank H. Wallrappa,b, Jian-Jung Panc, Gurusankar Ramamoorthyc, Daniel E. Almonacidb,d, Brandan S. Hilleriche, Ronald Seidele, Yury Patskovskye, Patricia C. Babbittb,d, Steven C. Almoe, Matthew P. Jacobsona,b,1, and C. ...
3MZW
HER2 extracelluar region with affinity matured 3-helix affibody ZHER2:342
Structural basis for high-affinity HER2 receptor binding by an engineered protein Charles Eigenbrota,b,1, Mark Ultscha, Anatoly Dubnovitskyc, Lars Abrahmsénd,1, and Torleif Härdc,1 aDepartment of Structural Biology and bDepartment of Antibody Engineering, Genentech Inc., 1 DNA Way, South San Francisco, CA 94080; cDepar...
3N00
Crystal Structure of a deletion mutant of human Reverba ligand binding domain bound with an NCoR ID1 peptide determined to 2.60A
Structural Analysis of Rev-erbα Bound to NCoR Reveals a Unique Mechanism of Nuclear Receptor-Corepressor Interaction Caroline A. Phelan1,*, Robert T. Gampe Jr.2,*, Millard H. Lambert2, Derek J. Parks3, Valerie Montana2, Jane Bynum3, Timothy M. Broderick3, Xiao Hu1, Shawn P. Williams2, Robert T. Nolte2,#, and Mitchell A...
3N02
Thaumatic crystals grown in loops/micromounts
short communications J. Appl. Cryst. (2010). 43, 1513–1518 doi:10.1107/S0021889810040409 1513 Journal of Applied Crystallography ISSN 0021-8898 Received 5 June 2010 Accepted 8 October 2010 # 2010 International Union of Crystallography Printed in Singapore – all rights reserved Diffraction study of protein crystals grow...
3N03
Thaumatin crystals grown from drops
short communications J. Appl. Cryst. (2010). 43, 1513–1518 doi:10.1107/S0021889810040409 1513 Journal of Applied Crystallography ISSN 0021-8898 Received 5 June 2010 Accepted 8 October 2010 # 2010 International Union of Crystallography Printed in Singapore – all rights reserved Diffraction study of protein crystals grow...
3N06
A mutant human Prolactin receptor antagonist H27A in complex with the extracellular domain of the human prolactin receptor
Two Independent Histidines, One in Human Prolactin and One in Its Receptor, Are Critical for pH-dependent Receptor Recognition and Activation*□ S Received for publication,August 4, 2010, and in revised form, September 8, 2010 Published, JBC Papers in Press,September 30, 2010, DOI 10.1074/jbc.M110.172072 Mandar V. Kulka...
3N07
Structure of putative 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase from Vibrio cholerae
The Structural Basis for Divergence of Substrate Specificity and Biological Function within HAD Phosphatases in Lipopolysaccharide and Sialic Acid Biosynthesis Kelly D. Daughtry†, Hua Huang§, Vladimir Malashkevich‡, Yury Patskovsky‡, Weifeng Liu‡, Udupi Ramagopal‡, J. Michael Sauder‖, Stephen K. Burley‖,ˆ, Steven C. Al...
3N0A
Crystal structure of auxilin (40-400)
Structure of the PTEN-like region of auxilin, a detector of clathrin-coated vesicle budding Rong Guan1, Dai Han3, Stephen C. Harrison3,4, and Tomas Kirchhausen1,2 1 Department of Cell Biology, Harvard Medical School, Boston, MA 02115 2 Immune Disease Institute and Program in Cellular and Molecular Medicine at Children'...
3N0B
TM0449 mutant crystals grown in loops/micromounts
short communications J. Appl. Cryst. (2010). 43, 1513–1518 doi:10.1107/S0021889810040409 1513 Journal of Applied Crystallography ISSN 0021-8898 Received 5 June 2010 Accepted 8 October 2010 # 2010 International Union of Crystallography Printed in Singapore – all rights reserved Diffraction study of protein crystals grow...
3N0C
TM0449 mutant crystal grown by hanging drop method
short communications J. Appl. Cryst. (2010). 43, 1513–1518 doi:10.1107/S0021889810040409 1513 Journal of Applied Crystallography ISSN 0021-8898 Received 5 June 2010 Accepted 8 October 2010 # 2010 International Union of Crystallography Printed in Singapore – all rights reserved Diffraction study of protein crystals grow...
3N0F
Crystal Structure of Isoprene Synthase from Grey Poplar Leaves (Populus x canescens)
Structure of isoprene synthase illuminates the chemical mechanism of teragram atmospheric carbon emission Mustafa Köksal§, Ina Zimmer#, Jörg-Peter Schnitzler#, and David W. Christianson§,* § Roy and Diana Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, 231 South 34th Street, Philadelphia, PA ...
3N0G
Crystal Structure of Isoprene Synthase from Grey Poplar Leaves (Populus x canescens) in complex with three Mg2+ ions and dimethylallyl-S-thiolodiphosphate
Structure of isoprene synthase illuminates the chemical mechanism of teragram atmospheric carbon emission Mustafa Köksal§, Ina Zimmer#, Jörg-Peter Schnitzler#, and David W. Christianson§,* § Roy and Diana Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, 231 South 34th Street, Philadelphia, PA ...
3N0H
hDHFR double mutant Q35S/N64F Trimethoprim Binary Complex
Crystallographic Analysis Reveals a Novel Second Binding Site for Trimethoprim in Active Site Double Mutants of Human Dihydrofolate Reductase†,,‡ Vivian Cody*,§,∥, Jim Pace§, Jennifer Piraino§, and Sherry F. Queener⊥ §Structural Biology Department, Hauptman Woodward Medical Research Institute, 700 Ellicott St. Buffalo,...
3N0K
Proteinase inhibitor from Coprinopsis cinerea
Structural Basis of Trypsin Inhibition and Entomotoxicity of Cospin, Serine Protease Inhibitor Involved in Defense of Coprinopsis cinerea Fruiting Bodies*□ S Received for publication,July 25, 2011, and in revised form, November 26, 2011 Published, JBC Papers in Press,December 14, 2011, DOI 10.1074/jbc.M111.285304 Jeric...
3N0M
Crystal structure of BA2930 mutant (H183G) in complex with AcCoA
Structural analysis of a putative aminoglycoside N- acetyltransferase from Bacillus anthracis Maria M. Klimecka1,6, Maksymilian Chruszcz1,6, Jose Font1,6, Tatiana Skarina2,6, Igor Shumilin1,6, Olena Onopryienko2,6, Przemyslaw J. Porebski1,6,7, Marcin Cymborowski1,6, Matthew D. Zimmerman1,6, Jeremy Hasseman4,6, Ian J. G...
3N0P
A mutant human Prolactin receptor antagonist H30A in complex with the extracellular domain of the human prolactin receptor
Two Independent Histidines, One in Human Prolactin and One in Its Receptor, Are Critical for pH-dependent Receptor Recognition and Activation*□ S Received for publication,August 4, 2010, and in revised form, September 8, 2010 Published, JBC Papers in Press,September 30, 2010, DOI 10.1074/jbc.M110.172072 Mandar V. Kulka...
3N0R
Structure of the PhyR stress response regulator at 1.25 Angstrom resolution
A structural model of anti-anti-σ inhibition by a two-component receiver domain: the PhyR stress response regulator Julien Herrou1, Robert Foreman2, Aretha Fiebig1, and Sean Crosson1,2,* 1 Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL, USA 2 The Committee on Microbiology, The ...
3N0S
Crystal structure of BA2930 mutant (H183A) in complex with AcCoA
Structural analysis of a putative aminoglycoside N- acetyltransferase from Bacillus anthracis Maria M. Klimecka1,6, Maksymilian Chruszcz1,6, Jose Font1,6, Tatiana Skarina2,6, Igor Shumilin1,6, Olena Onopryienko2,6, Przemyslaw J. Porebski1,6,7, Marcin Cymborowski1,6, Matthew D. Zimmerman1,6, Jeremy Hasseman4,6, Ian J. G...
3N11
Crystal stricture of wild-type chitinase from Bacillus cereus NCTU2
Crystal Structures of Bacillus cereus NCTU2 Chitinase Complexes with Chitooligomers Reveal Novel Substrate Binding for Catalysis A CHITINASE WITHOUT CHITIN BINDING AND INSERTION DOMAINS*□ S Received for publication,June 3, 2010, and in revised form, July 27, 2010 Published, JBC Papers in Press,August 4, 2010, DOI 10.10...
3N12
Crystal stricture of chitinase in complex with zinc atoms from Bacillus cereus NCTU2
Crystal Structures of Bacillus cereus NCTU2 Chitinase Complexes with Chitooligomers Reveal Novel Substrate Binding for Catalysis A CHITINASE WITHOUT CHITIN BINDING AND INSERTION DOMAINS*□ S Received for publication,June 3, 2010, and in revised form, July 27, 2010 Published, JBC Papers in Press,August 4, 2010, DOI 10.10...
3N13
Crystal stricture of D143A chitinase in complex with NAG from Bacillus cereus NCTU2
Crystal Structures of Bacillus cereus NCTU2 Chitinase Complexes with Chitooligomers Reveal Novel Substrate Binding for Catalysis A CHITINASE WITHOUT CHITIN BINDING AND INSERTION DOMAINS*□ S Received for publication,June 3, 2010, and in revised form, July 27, 2010 Published, JBC Papers in Press,August 4, 2010, DOI 10.10...
3N15
Crystal stricture of E145Q chitinase in complex with NAG from Bacillus cereus NCTU2
Crystal Structures of Bacillus cereus NCTU2 Chitinase Complexes with Chitooligomers Reveal Novel Substrate Binding for Catalysis A CHITINASE WITHOUT CHITIN BINDING AND INSERTION DOMAINS*□ S Received for publication,June 3, 2010, and in revised form, July 27, 2010 Published, JBC Papers in Press,August 4, 2010, DOI 10.10...
3N17
Crystal stricture of E145Q/Y227F chitinase in complex with NAG from Bacillus cereus NCTU2
Crystal Structures of Bacillus cereus NCTU2 Chitinase Complexes with Chitooligomers Reveal Novel Substrate Binding for Catalysis A CHITINASE WITHOUT CHITIN BINDING AND INSERTION DOMAINS*□ S Received for publication,June 3, 2010, and in revised form, July 27, 2010 Published, JBC Papers in Press,August 4, 2010, DOI 10.10...
3N18
Crystal stricture of E145G/Y227F chitinase in complex with NAG from Bacillus cereus NCTU2
Crystal Structures of Bacillus cereus NCTU2 Chitinase Complexes with Chitooligomers Reveal Novel Substrate Binding for Catalysis A CHITINASE WITHOUT CHITIN BINDING AND INSERTION DOMAINS*□ S Received for publication,June 3, 2010, and in revised form, July 27, 2010 Published, JBC Papers in Press,August 4, 2010, DOI 10.10...
3N1A
Crystal stricture of E145G/Y227F chitinase in complex with cyclo-(L-His-L-Pro) from Bacillus cereus NCTU2
Crystal Structures of Bacillus cereus NCTU2 Chitinase Complexes with Chitooligomers Reveal Novel Substrate Binding for Catalysis A CHITINASE WITHOUT CHITIN BINDING AND INSERTION DOMAINS*□ S Received for publication,June 3, 2010, and in revised form, July 27, 2010 Published, JBC Papers in Press,August 4, 2010, DOI 10.10...
3N1B
C-terminal domain of Vps54 subunit of the GARP complex
Structural basis for the wobbler mouse neurodegenerative disorder caused by mutation in the Vps54 subunit of the GARP complex F. Javier Pérez-Victoriaa,1, Guillermo Abascal-Palaciosb,1, Igor Tascónb, Andrey Kajavac, Javier G. Magadána, Erik P. Piorod, Juan S. Bonifacinoa,2, and Aitor Hierrob,2 aCell Biology and Metabol...
3N1C
Crystal structure of the phosphofructokinase-2 from Escherichia coli in complex with fructose-6-phosphate
The Crystal Complex of Phosphofructokinase-2 of Escherichia coli with Fructose-6-phosphate KINETIC AND STRUCTURAL ANALYSIS OF THE ALLOSTERIC ATP INHIBITION*□ S Received for publication,July 12, 2010, and in revised form, October 15, 2010 Published, JBC Papers in Press,December 8, 2010, DOI 10.1074/jbc.M110.163162 Ricar...
3N1E
Vps54 C-terminal domain
Structural basis for the wobbler mouse neurodegenerative disorder caused by mutation in the Vps54 subunit of the GARP complex F. Javier Pérez-Victoriaa,1, Guillermo Abascal-Palaciosb,1, Igor Tascónb, Andrey Kajavac, Javier G. Magadána, Erik P. Piorod, Juan S. Bonifacinoa,2, and Aitor Hierrob,2 aCell Biology and Metabol...
3N1F
Crystal Structure of IhhN bound to CDOFn3
All Mammalian Hedgehog Proteins Interact with Cell Adhesion Molecule, Down-regulated by Oncogenes (CDO) and Brother of CDO (BOC) in a Conserved Manner*□ S Received for publication,April 7, 2010, and in revised form, May 24, 2010 Published, JBC Papers in Press,June 1, 2010, DOI 10.1074/jbc.M110.131680 Jennifer M. Kavran...
3N1G
Crystal structure of DhhN bound to BOCFn3
All Mammalian Hedgehog Proteins Interact with Cell Adhesion Molecule, Down-regulated by Oncogenes (CDO) and Brother of CDO (BOC) in a Conserved Manner*□ S Received for publication,April 7, 2010, and in revised form, May 24, 2010 Published, JBC Papers in Press,June 1, 2010, DOI 10.1074/jbc.M110.131680 Jennifer M. Kavran...
3N1M
Crystal Structure of IhhN bound to BOCFn3
All Mammalian Hedgehog Proteins Interact with Cell Adhesion Molecule, Down-regulated by Oncogenes (CDO) and Brother of CDO (BOC) in a Conserved Manner*□ S Received for publication,April 7, 2010, and in revised form, May 24, 2010 Published, JBC Papers in Press,June 1, 2010, DOI 10.1074/jbc.M110.131680 Jennifer M. Kavran...
3N1O
Crystal structure of IhhN
All Mammalian Hedgehog Proteins Interact with Cell Adhesion Molecule, Down-regulated by Oncogenes (CDO) and Brother of CDO (BOC) in a Conserved Manner*□ S Received for publication,April 7, 2010, and in revised form, May 24, 2010 Published, JBC Papers in Press,June 1, 2010, DOI 10.1074/jbc.M110.131680 Jennifer M. Kavran...
3N1P
Crystal Structure of IhhN bound to BOCFn3
All Mammalian Hedgehog Proteins Interact with Cell Adhesion Molecule, Down-regulated by Oncogenes (CDO) and Brother of CDO (BOC) in a Conserved Manner*□ S Received for publication,April 7, 2010, and in revised form, May 24, 2010 Published, JBC Papers in Press,June 1, 2010, DOI 10.1074/jbc.M110.131680 Jennifer M. Kavran...
3N1Q
Crystal Structure of DhhN bound to CDOFn3
All Mammalian Hedgehog Proteins Interact with Cell Adhesion Molecule, Down-regulated by Oncogenes (CDO) and Brother of CDO (BOC) in a Conserved Manner*□ S Received for publication,April 7, 2010, and in revised form, May 24, 2010 Published, JBC Papers in Press,June 1, 2010, DOI 10.1074/jbc.M110.131680 Jennifer M. Kavran...
3N1X
X-ray Crystal Structure of Toluene/o-Xylene Monooxygenase Hydroxylase T201C Mutant
Active Site Threonine Facilitates Proton Transfer During Dioxygen Activation at the Diiron Center of Toluene/o-Xylene Monooxygenase Hydroxylase Woon Ju Song†, Michael S. McCormick†, Rachel K. Behan†, Matthew H. Sazinsky§, Wei Jiang‡, Jeffery Lin§, Carsten Krebs‡, and Stephen J. Lippard†,* † Department of Chemistry, Mas...
3N1Y
X-ray Crystal Structure of Toluene/o-Xylene Monooxygenase Hydroxylase T201G Mutant
Active Site Threonine Facilitates Proton Transfer During Dioxygen Activation at the Diiron Center of Toluene/o-Xylene Monooxygenase Hydroxylase Woon Ju Song†, Michael S. McCormick†, Rachel K. Behan†, Matthew H. Sazinsky§, Wei Jiang‡, Jeffery Lin§, Carsten Krebs‡, and Stephen J. Lippard†,* † Department of Chemistry, Mas...
3N1Z
X-ray Crystal Structure of Toluene/o-Xylene Monooxygenase Hydroxylase T201S Mutant
Active Site Threonine Facilitates Proton Transfer During Dioxygen Activation at the Diiron Center of Toluene/o-Xylene Monooxygenase Hydroxylase Woon Ju Song†, Michael S. McCormick†, Rachel K. Behan†, Matthew H. Sazinsky§, Wei Jiang‡, Jeffery Lin§, Carsten Krebs‡, and Stephen J. Lippard†,* † Department of Chemistry, Mas...
3N20
X-ray Crystal Structure of Toluene/o-Xylene Monooxygenase Hydroxylase T201V Mutant
Active Site Threonine Facilitates Proton Transfer During Dioxygen Activation at the Diiron Center of Toluene/o-Xylene Monooxygenase Hydroxylase Woon Ju Song†, Michael S. McCormick†, Rachel K. Behan†, Matthew H. Sazinsky§, Wei Jiang‡, Jeffery Lin§, Carsten Krebs‡, and Stephen J. Lippard†,* † Department of Chemistry, Mas...
3N25
The structure of muscle pyruvate kinase in complex with proline, pyruvate, and Mn2+
PROTEIN STRUCTURE REPORT The pyruvate kinase model system, a cautionary tale for the use of osmolyte perturbations to support conformational equilibria in allostery Aron W. Fenton,* Troy A. Johnson, and Todd Holyoak Department of Biochemistry and Molecular Biology, The University of Kansas Medical Center, Kansas City, ...
3N26
Cpn0482 : the arginine binding protein from the periplasm of chlamydia Pneumoniae
Exploiting Antigenic Diversity for Vaccine Design THE CHLAMYDIA ArtJ PARADIGM*□ S Received for publication,February 26, 2010, and in revised form, May 18, 2010 Published, JBC Papers in Press,June 30, 2010, DOI 10.1074/jbc.M110.118513 Marco Soriani‡, Pierre Petit§, Renata Grifantini‡1, Roberto Petracca‡, Giovanni Gancit...
3N29
Crystal structure of carboxynorspermidine decarboxylase complexed with Norspermidine from Campylobacter jejuni
Evolution of Substrate Specificity within a Diverse Family of /-Barrel-fold Basic Amino Acid Decarboxylases X-RAY STRUCTURE DETERMINATION OF ENZYMES WITH SPECIFICITY FOR L-ARGININE AND CARBOXYNORSPERMIDINE*□ S Received for publication,March 8, 2010, and in revised form, April 14, 2010 Published, JBC Papers in Press,J...
3N2C
Crystal structure of prolidase eah89906 complexed with n-methylphosphonate-l-proline
Functional Identification and Structure Determination of Two Novel Prolidases from cog1228 in the Amidohydrolase Superfamily Dao Feng Xiang‡, Yury PatskovskyΨ, Chengfu Xu‡, Alexander A. FedorovΨ, Elena V. FedorovΨ, Abby A. Sisco‡, J. Michael Sauder§, Stephen K. Burley§, Steven C. AlmoΨ,*, and Frank M. Raushel‡,* ‡Depar...
3N2E
Crystal structure of Helicobactor pylori shikimate kinase in complex with NSC162535
Structures of Helicobacter pylori Shikimate Kinase Reveal a Selective Inhibitor-Induced-Fit Mechanism Wen-Chi Cheng1,2., Yen-Fu Chen3., Hung-Jung Wang1,2, Kai-Cheng Hsu3, Shuang-Chih Lin1, Tzu-Jung Chen1, Jinn-Moon Yang3,4*, Wen-Ching Wang1,2* 1 Institute of Molecular and Cellular Biology and Department of Life Science...
3N2G
TUBULIN-NSC 613863: RB3 Stathmin-like domain complex
Stathmin and Interfacial Microtubule Inhibitors Recognize a Naturally Curved Conformation of Tubulin Dimers*□ S Received for publication,May 19, 2010, and in revised form, July 15, 2010 Published, JBC Papers in Press,July 30, 2010, DOI 10.1074/jbc.M110.141929 Pascale Barbier‡1, Audrey Dorle´ans§2, Francois Devred‡, Lau...
3N2K
TUBULIN-NSC 613862: RB3 Stathmin-like domain complex
Stathmin and Interfacial Microtubule Inhibitors Recognize a Naturally Curved Conformation of Tubulin Dimers*□ S Received for publication,May 19, 2010, and in revised form, July 15, 2010 Published, JBC Papers in Press,July 30, 2010, DOI 10.1074/jbc.M110.141929 Pascale Barbier‡1, Audrey Dorle´ans§2, Francois Devred‡, Lau...
3N2N
The Crystal Structure of Tumor Endothelial Marker 8 (TEM8) extracellular domain
The Structure of Tumor Endothelial Marker 8 (TEM8) Extracellular Domain and Implications for Its Receptor Function for Recognizing Anthrax Toxin Sheng Fu1,2., Xiaohang Tong1,2., Chenguang Cai3, Ying Zhao2, Yang Wu1,2, Yuanyuan Li1,2, Junjie Xu3, Xuejun C. Zhang1, Long Xu4, Wei Chen3*, Zihe Rao1,2,5* 1 National Laborato...
3N2O
X-ray crystal structure of arginine decarboxylase complexed with Arginine from Vibrio vulnificus
Evolution of Substrate Specificity within a Diverse Family of /-Barrel-fold Basic Amino Acid Decarboxylases X-RAY STRUCTURE DETERMINATION OF ENZYMES WITH SPECIFICITY FOR L-ARGININE AND CARBOXYNORSPERMIDINE*□ S Received for publication,March 8, 2010, and in revised form, April 14, 2010 Published, JBC Papers in Press,J...
3N2R
Structure of neuronal nitric oxide synthase heme domain in complex with 6-(((3R,4R/3S,4S)-4-(3-Phenoxyphenoxy)pyrrolidin-3-yl)methyl)pyridin-2-amine
Structure-based design, synthesis, and biological evaluation of lipophilic-tailed monocationic inhibitors of neuronal nitric oxide synthase Fengtian Xue1,5,6, Jinwen Huang1,5, Haitao Ji1, Jianguo Fang1, Huiying Li2, Pavel Martásek3,4, Linda J. Roman3, Thomas L. Poulos2,*, and Richard B. Silverman1,* 1 Department of Che...
3N2Y
Crystal structure of tyrosyl-tRNA synthetase complexed with p-(2-tetrazolyl)-phenylalanine
A Biosynthetic Route to Photoclick Chemistry on Protein Jiangyun Wang1,*, Wei Zhang1, Wenjiao Song2, Yizhong Wang2, Zhipeng Yu2, Jiasong Li3, Minhao Wu3, Lin Wang3, Jianye Zang3, and Qing Lin2,* 1 National Key Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China 2...
3N2Z
The Structure of Human Prolylcarboxypeptidase at 2.80 Angstroms Resolution
Soisson et al. BMC Structural Biology 2010, 10:16 http://www.biomedcentral.com/1472-6807/10/16 Open Access RESEARCH ARTICLE © 2010 Soisson et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2....
3N37
Ribonucleotide Reductase Dimanganese(II)-NrdF from Escherichia coli
Structural Basis for Activation of Class Ib Ribonucleotide Reductase Amie K. Boal1, Joseph A. Cotruvo Jr.2, JoAnne Stubbe2,3,*, and Amy C. Rosenzweig1,* 1Departments of Biochemistry, Molecular Biology and Cell Biology, and Chemistry, Northwestern University, Evanston, IL 60208, USA 2Department of Chemistry, Massachuset...
3N38
Ribonucleotide Reductase NrdF from Escherichia coli Soaked with Ferrous Ions
Structural Basis for Activation of Class Ib Ribonucleotide Reductase Amie K. Boal1, Joseph A. Cotruvo Jr.2, JoAnne Stubbe2,3,*, and Amy C. Rosenzweig1,* 1Departments of Biochemistry, Molecular Biology and Cell Biology, and Chemistry, Northwestern University, Evanston, IL 60208, USA 2Department of Chemistry, Massachuset...
3N39
Ribonucleotide Reductase Dimanganese(II)-NrdF from Escherichia coli in Complex with NrdI
Structural Basis for Activation of Class Ib Ribonucleotide Reductase Amie K. Boal1, Joseph A. Cotruvo Jr.2, JoAnne Stubbe2,3,*, and Amy C. Rosenzweig1,* 1Departments of Biochemistry, Molecular Biology and Cell Biology, and Chemistry, Northwestern University, Evanston, IL 60208, USA 2Department of Chemistry, Massachuset...
3N3A
Ribonucleotide Reductase Dimanganese(II)-NrdF from Escherichia coli in Complex with Reduced NrdI
Structural Basis for Activation of Class Ib Ribonucleotide Reductase Amie K. Boal1, Joseph A. Cotruvo Jr.2, JoAnne Stubbe2,3,*, and Amy C. Rosenzweig1,* 1Departments of Biochemistry, Molecular Biology and Cell Biology, and Chemistry, Northwestern University, Evanston, IL 60208, USA 2Department of Chemistry, Massachuset...
3N3B
Ribonucleotide Reductase Dimanganese(II)-NrdF from Escherichia coli in Complex with Reduced NrdI with a Trapped Peroxide
Structural Basis for Activation of Class Ib Ribonucleotide Reductase Amie K. Boal1, Joseph A. Cotruvo Jr.2, JoAnne Stubbe2,3,*, and Amy C. Rosenzweig1,* 1Departments of Biochemistry, Molecular Biology and Cell Biology, and Chemistry, Northwestern University, Evanston, IL 60208, USA 2Department of Chemistry, Massachuset...
3N3E
Zebrafish AlphaA crystallin
PROTEIN STRUCTURE REPORT Non-3D domain swapped crystal structure of truncated zebrafish alphaA crystallin A. Laganowsky1,2,3 and D. Eisenberg1,2,3* 1UCLA-DOE, Institute for Genomics and Proteomics, Los Angeles, California 2Department of Chemistry and Biochemistry, University of California Los Angeles, Los Angeles, Cali...
3N3F
Crystal Structure of the Human Collagen XV Trimerization Domain: A Potent Trimerizing Unit Common to Multiplexin Collagens
Crystal Structure of the Human Collagen XV Trimerization Domain: A Potent Trimerizing Unit Common to Multiplexin Collagens Jacqueline A. Wirza,b, Sergei P. Boudkoa,b, Thomas F. Lerchb, Michael S. Chapmanb, and Hans Peter Bächingera,b,* a Research Department of Shriners Hospital for Children, 3101 SW Sam Jackson Pk. Rd....
3N3K
The catalytic domain of USP8 in complex with a USP8 specific inhibitor
A Strategy for Modulation of Enzymes in the Ubiquitin System Andreas Ernst1, George Avvakumov2, Jiefei Tong3, Yihui Fan4, Yanling Zhao4, Philipp Alberts3, Avinash Persaud3,5, John R Walker2, Ana-Mirela Neculai1, Dante Neculai2, Andrew Vorobyov1, Pankaj Garg1, Linda Beatty1, Pak-Kei Chan6, Yu-Chi Juang7, Marie- Claude L...
3N3T
Crystal structure of putative diguanylate cyclase/phosphodiesterase complex with cyclic di-gmp
Structural insight into the mechanism of cyclic di-GMP hydrolysis by EAL domain phosphodiesterases Anatoli Tchigvintsev1,5, Xiaohui Xu1,5, Alexander Singer1, Changsoo Chang2, Greg Brown1, Michael Proudfoot1, Hong Cui1, Robert Flick1, Wayne F. Anderson3, Andrzej Joachimiak2, Michael Y. Galperin4, Alexei Savchenko1, and ...
3N3U
Crystal Structure of IbpAFic2
Structural basis of Fic mediated adenylylation Junyu Xiao1, Carolyn A. Worby1,2,3, Seema Mattoo4, Banumathi Sankaran5, and Jack E. Dixon1,2,3,4 1Department of Pharmacology, University of California, San Diego, La Jolla, CA 92093, USA 2Department of Cellular and Molecular Medicine, University of California, San Diego, ...
3N4I
Crystal structure of the SHV-1 D104E beta-lactamase/beta-lactamase inhibitor protein (BLIP) complex
Specificity and Cooperativity at β-lactamase Position 104 in TEM-1/BLIP and SHV-1/BLIP interactions Melinda S. Hanes1,2, Kimberly A. Reynolds1,2,7, Case McNamara3, Partho Ghosh3, Robert A. Bonomo4,5, Jack F. Kirsch6, and Tracy M. Handel2 1Biophysics Graduate Group, University of California, Berkeley, Berkeley, CA 94729...
3N4M
E. coli RNA polymerase alpha subunit C-terminal domain in complex with CAP and DNA
RNA polymerase alpha subunit recognizes the DNA shape of the Upstream Promoter element Samuel Lara-Gonzalez1,§, Ana Carolina Dantas Machado2,§, Satyanarayan Rao2,§, Andrew A. Napoli1, Jens Birktoft1, Rosa Di Felice2,3,4, Remo Rohs2,3,5,6,*, Catherine L. Lawson1,7,* 1Department of Chemistry and Chemical Biology, Rutge...
3N4N
Insights into the stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido[2,3-d]pyrimidin-2-one
Insights into the DNA stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido [2,3-d]pyrimidin-2-one Ella Czarina Magat Juan1, Satoru Shimizu1, Xiao Ma1, Taizo Kurose1, Tsuyoshi Haraguchi1, Fang Zhang2, Masaru Tsunoda2, Akihiro Ohkubo1, Mitsuo Sekine1, ...
3N4O
Insights into the stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido[2,3-d]pyrimidin-2-one
Insights into the DNA stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido [2,3-d]pyrimidin-2-one Ella Czarina Magat Juan1, Satoru Shimizu1, Xiao Ma1, Taizo Kurose1, Tsuyoshi Haraguchi1, Fang Zhang2, Masaru Tsunoda2, Akihiro Ohkubo1, Mitsuo Sekine1, ...
3N4P
Human cytomegalovirus terminase nuclease domain
Structure and inhibition of herpesvirus DNA packaging terminase nuclease domain Marta Nadala,b, Philippe J. Masc, Alexandre G. Blancoa,b, Carme Arnana,b, Maria Solàb, Darren J. Hartc, and Miquel Colla,b,1 aInstitute for Research in Biomedicine, Barcelona Science Park, Baldiri Reixac 10, 08028 Barcelona, Spain; bInstitu...
3N4Q
Human cytomegalovirus terminase nuclease domain, Mn soaked
Structure and inhibition of herpesvirus DNA packaging terminase nuclease domain Marta Nadala,b, Philippe J. Masc, Alexandre G. Blancoa,b, Carme Arnana,b, Maria Solàb, Darren J. Hartc, and Miquel Colla,b,1 aInstitute for Research in Biomedicine, Barcelona Science Park, Baldiri Reixac 10, 08028 Barcelona, Spain; bInstitu...
3N4R
Structure of Csm1 C-terminal domain, R3 form
The monopolin complex cross-links kinetochore components to regulate chromosome-microtubule attachments Kevin D. Corbett1, Calvin K. Yip2, Ly-Sha Ee3, Thomas Walz2,4, Angelika Amon3,4, and Stephen C. Harrison1,4,* 1 Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 250 Longwood Aven...