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7YY3
Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 7
Structural Characterization of Mycobacterium abscessus Phosphopantetheine Adenylyl Transferase Ligand Interactions: Implications for Fragment-Based Drug Design Sherine E. Thomas 1*†, William J. McCarthy 2†, Jamal El Bakali 2†, Karen P. Brown 3, So Yeon Kim 1, Michal Blaszczyk 1†, Vítor Mendes 1,3, Chris Abell 2, R. And...
7YY4
Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 8
Structural Characterization of Mycobacterium abscessus Phosphopantetheine Adenylyl Transferase Ligand Interactions: Implications for Fragment-Based Drug Design Sherine E. Thomas 1*†, William J. McCarthy 2†, Jamal El Bakali 2†, Karen P. Brown 3, So Yeon Kim 1, Michal Blaszczyk 1†, Vítor Mendes 1,3, Chris Abell 2, R. And...
7YY5
Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 9
Structural Characterization of Mycobacterium abscessus Phosphopantetheine Adenylyl Transferase Ligand Interactions: Implications for Fragment-Based Drug Design Sherine E. Thomas 1*†, William J. McCarthy 2†, Jamal El Bakali 2†, Karen P. Brown 3, So Yeon Kim 1, Michal Blaszczyk 1†, Vítor Mendes 1,3, Chris Abell 2, R. And...
7YY6
Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 10
Structural Characterization of Mycobacterium abscessus Phosphopantetheine Adenylyl Transferase Ligand Interactions: Implications for Fragment-Based Drug Design Sherine E. Thomas 1*†, William J. McCarthy 2†, Jamal El Bakali 2†, Karen P. Brown 3, So Yeon Kim 1, Michal Blaszczyk 1†, Vítor Mendes 1,3, Chris Abell 2, R. And...
7YY7
Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 11
Structural Characterization of Mycobacterium abscessus Phosphopantetheine Adenylyl Transferase Ligand Interactions: Implications for Fragment-Based Drug Design Sherine E. Thomas 1*†, William J. McCarthy 2†, Jamal El Bakali 2†, Karen P. Brown 3, So Yeon Kim 1, Michal Blaszczyk 1†, Vítor Mendes 1,3, Chris Abell 2, R. And...
7YY8
Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 12
Structural Characterization of Mycobacterium abscessus Phosphopantetheine Adenylyl Transferase Ligand Interactions: Implications for Fragment-Based Drug Design Sherine E. Thomas 1*†, William J. McCarthy 2†, Jamal El Bakali 2†, Karen P. Brown 3, So Yeon Kim 1, Michal Blaszczyk 1†, Vítor Mendes 1,3, Chris Abell 2, R. And...
7YY9
Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 13
Structural Characterization of Mycobacterium abscessus Phosphopantetheine Adenylyl Transferase Ligand Interactions: Implications for Fragment-Based Drug Design Sherine E. Thomas 1*†, William J. McCarthy 2†, Jamal El Bakali 2†, Karen P. Brown 3, So Yeon Kim 1, Michal Blaszczyk 1†, Vítor Mendes 1,3, Chris Abell 2, R. And...
7YYA
Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 14
Structural Characterization of Mycobacterium abscessus Phosphopantetheine Adenylyl Transferase Ligand Interactions: Implications for Fragment-Based Drug Design Sherine E. Thomas 1*†, William J. McCarthy 2†, Jamal El Bakali 2†, Karen P. Brown 3, So Yeon Kim 1, Michal Blaszczyk 1†, Vítor Mendes 1,3, Chris Abell 2, R. And...
7YYB
Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 15
Structural Characterization of Mycobacterium abscessus Phosphopantetheine Adenylyl Transferase Ligand Interactions: Implications for Fragment-Based Drug Design Sherine E. Thomas 1*†, William J. McCarthy 2†, Jamal El Bakali 2†, Karen P. Brown 3, So Yeon Kim 1, Michal Blaszczyk 1†, Vítor Mendes 1,3, Chris Abell 2, R. And...
7YYC
Crystal structure of Mycobacterium abscessus Phosphopantetheine adenylyltransferase in complex with Fragment 16
Structural Characterization of Mycobacterium abscessus Phosphopantetheine Adenylyl Transferase Ligand Interactions: Implications for Fragment-Based Drug Design Sherine E. Thomas 1*†, William J. McCarthy 2†, Jamal El Bakali 2†, Karen P. Brown 3, So Yeon Kim 1, Michal Blaszczyk 1†, Vítor Mendes 1,3, Chris Abell 2, R. And...
7YYG
Crystal structure of gatekeeper of type III secretion system in Bordetella BopN
BopN is a Gatekeeper of the Bordetella Type III Secretion System Kevin Munoz Navarrete,a Ladislav Bumba,b Tatyana Prudnikova,c Ivana Malcova,a Tania Romero Allsop,a Peter Sebo,b Jana Kamanovaa aLaboratory of Infection Biology, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic bLaborator...
7YYH
Structure of the human CCANdeltaT CENP-A alpha-satellite complex
Structure of the human inner kinetochore bound to a centromeric CENP-A nucleosome Stanislau Yatskevich#1, Kyle W. Muir#1, Dom Bellini1, Ziguo Zhang1, Jing Yang1, Thomas Tischer1, Masa Predin1, Tom Dendooven1, Stephen H. McLaughlin1, David Barford1,* 1MRC Laboratory of Molecular Biology; Francis Crick Avenue, Cambridg...
7YYI
Solution NMR structure of N-acetylglucosaminyltransferase V (GnTV) TMD
1 Vol.:(0123456789) Scientific Reports | (2022) 12:20987 | https://doi.org/10.1038/s41598-022-24772-8 www.nature.com/scientificreports Helical stability of the GnTV transmembrane domain impacts on SPPL3 dependent cleavage Alkmini A. Papadopoulou 1, Walter Stelzer 2, Mara Silber 3,8, Christine Schlosser 1, C...
7YYK
Crystal structure of the O-fucosylated form of TSRs1-3 from the human thrombospondin 1
O-fucosylation stabilizes the TSR3 motif in thrombospondin-1 by interacting with nearby amino acids and protecting a disulfide bond Received for publication, April 7, 2022, and in revised form, May 14, 2022 Published, Papers in Press, May 18, 2022, https://doi.org/10.1016/j.jbc.2022.102047 Steven J. Berardinelli1 , Alex...
7YYL
nucleotide-free DCCP:DCCP-R complex
Structural basis for coupled ATP-driven electron transfer in the double-cubane cluster protein Jae-Hun Jeounga , Sabine Nicklischa , and Holger Dobbeka,1 Edited by Douglas Rees, HHMI, California Institute of Technology, Pasadena, CA; received February 28, 2022; accepted June 22, 2022 Electron transfers coupled to the h...
7YYO
Cryo-EM structure of an a-carboxysome RuBisCO enzyme at 2.9 A resolution
Article Single-particle cryo-EM analysis of the shell architecture and internal organization of an intact a-carboxysome Graphical abstract Highlights d Carboxysomes are prokaryotic microcompartments that sequester photosynthetic enzymes d We used single-particle cryo-EM analysis to characterize intact carboxysome compl...
7YYP
Structure of aIF5B from Pyrococcus abyssi complexed with GDP
6532–6548 Nucleic Acids Research, 2022, Vol. 50, No. 11 Published online 13 June 2022 https://doi.org/10.1093/nar/gkac490 Role of aIF5B in archaeal translation initiation Ramy Kazan1, Gabrielle Bourgeois1, Christine Lazennec-Schurdevin1, Eric Larquet2, Yves Mechulam1,*, Pierre-Damien Coureux1,* and Emmanuelle Schmitt 1...
7YYY
Molecular snapshots of drug release from tubulin: 1 microsecond after photoactivation
Article https://doi.org/10.1038/s41467-023-36481-5 Watching the release of a photo- pharmacological drug from tubulin using time-resolved serial crystallography Maximilian Wranik1, Tobias Weinert 1, Chavdar Slavov 2, Tiziana Masini3, Antonia Furrer 1, Natacha Gaillard1, Dario Gioia3, Marco Ferrarotti3, Daniel James1, H...
7YYZ
Molecular snapshots of drug release from tubulin: 10 microseconds after photoactivation.
Article https://doi.org/10.1038/s41467-023-36481-5 Watching the release of a photo- pharmacological drug from tubulin using time-resolved serial crystallography Maximilian Wranik1, Tobias Weinert 1, Chavdar Slavov 2, Tiziana Masini3, Antonia Furrer 1, Natacha Gaillard1, Dario Gioia3, Marco Ferrarotti3, Daniel James1, H...
7YZ0
Molecular snapshots of drug release from tubulin: 100 microseconds after photoactivation.
Article https://doi.org/10.1038/s41467-023-36481-5 Watching the release of a photo- pharmacological drug from tubulin using time-resolved serial crystallography Maximilian Wranik1, Tobias Weinert 1, Chavdar Slavov 2, Tiziana Masini3, Antonia Furrer 1, Natacha Gaillard1, Dario Gioia3, Marco Ferrarotti3, Daniel James1, H...
7YZ1
Molecular snapshots of drug release from tubulin: 1 millisecond after photoactivation.
Article https://doi.org/10.1038/s41467-023-36481-5 Watching the release of a photo- pharmacological drug from tubulin using time-resolved serial crystallography Maximilian Wranik1, Tobias Weinert 1, Chavdar Slavov 2, Tiziana Masini3, Antonia Furrer 1, Natacha Gaillard1, Dario Gioia3, Marco Ferrarotti3, Daniel James1, H...
7YZ2
Molecular snapshots of drug release from tubulin: 10 milliseconds after photoactivation.
Article https://doi.org/10.1038/s41467-023-36481-5 Watching the release of a photo- pharmacological drug from tubulin using time-resolved serial crystallography Maximilian Wranik1, Tobias Weinert 1, Chavdar Slavov 2, Tiziana Masini3, Antonia Furrer 1, Natacha Gaillard1, Dario Gioia3, Marco Ferrarotti3, Daniel James1, H...
7YZ3
Molecular snapshots of drug release from tubulin: Apo state
Article https://doi.org/10.1038/s41467-023-36481-5 Watching the release of a photo- pharmacological drug from tubulin using time-resolved serial crystallography Maximilian Wranik1, Tobias Weinert 1, Chavdar Slavov 2, Tiziana Masini3, Antonia Furrer 1, Natacha Gaillard1, Dario Gioia3, Marco Ferrarotti3, Daniel James1, H...
7YZ5
Molecular snapshots of drug release from tubulin: 100 milliseconds (steady state)
Article https://doi.org/10.1038/s41467-023-36481-5 Watching the release of a photo- pharmacological drug from tubulin using time-resolved serial crystallography Maximilian Wranik1, Tobias Weinert 1, Chavdar Slavov 2, Tiziana Masini3, Antonia Furrer 1, Natacha Gaillard1, Dario Gioia3, Marco Ferrarotti3, Daniel James1, H...
7YZ6
Molecular snapshots of drug release from tubulin: Dark (steady state)
Article https://doi.org/10.1038/s41467-023-36481-5 Watching the release of a photo- pharmacological drug from tubulin using time-resolved serial crystallography Maximilian Wranik1, Tobias Weinert 1, Chavdar Slavov 2, Tiziana Masini3, Antonia Furrer 1, Natacha Gaillard1, Dario Gioia3, Marco Ferrarotti3, Daniel James1, H...
7YZ7
Crystal structure of the zebrafish FoxH1 bound to the TGTGGATT site
Article https://doi.org/10.1038/s41467-022-34925-y Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1 Radoslaw Pluta 1,8, Eric Aragón1,8, Nicholas A. Prescott 2,3, Lidia Ruiz1, Rebeca A. Mees 1, Blazej Baginski 1, Julia R. Flood3, Pau Martin-Malpartida 1, Joan Massagué 4, Yael David ...
7YZ9
Structure of catalytic domain of Rv1625c bound to nanobody NB4
Mehta, Khanppnavar et al. eLife 2022;11:e77032. DOI: https://doi.org/10.7554/eLife.77032  1 of 21 Structure of Mycobacterium tuberculosis Cya, an evolutionary ancestor of the mammalian membrane adenylyl cyclases Ved Mehta1†, Basavraj Khanppnavar1,2†, Dina Schuster1,2,3, Ilayda Kantarci1, Irene Vercellino1, Angela K...
7YZA
Crystal structure of the zebrafish FoxH1 bound to the TGTGTATT site
Article https://doi.org/10.1038/s41467-022-34925-y Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1 Radoslaw Pluta 1,8, Eric Aragón1,8, Nicholas A. Prescott 2,3, Lidia Ruiz1, Rebeca A. Mees 1, Blazej Baginski 1, Julia R. Flood3, Pau Martin-Malpartida 1, Joan Massagué 4, Yael David ...
7YZB
Crystal structure of the human FoxH1 bound to the TGTGGATT site
Article https://doi.org/10.1038/s41467-022-34925-y Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1 Radoslaw Pluta 1,8, Eric Aragón1,8, Nicholas A. Prescott 2,3, Lidia Ruiz1, Rebeca A. Mees 1, Blazej Baginski 1, Julia R. Flood3, Pau Martin-Malpartida 1, Joan Massagué 4, Yael David ...
7YZC
Crystal structure of the zebrafish FoxH1 bound to the TGTTTATT site
Article https://doi.org/10.1038/s41467-022-34925-y Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1 Radoslaw Pluta 1,8, Eric Aragón1,8, Nicholas A. Prescott 2,3, Lidia Ruiz1, Rebeca A. Mees 1, Blazej Baginski 1, Julia R. Flood3, Pau Martin-Malpartida 1, Joan Massagué 4, Yael David ...
7YZD
Crystal structure of the zebrafish FoxH1 bound to the TGTTTACT site (fkh motif GTAAACA)
Article https://doi.org/10.1038/s41467-022-34925-y Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1 Radoslaw Pluta 1,8, Eric Aragón1,8, Nicholas A. Prescott 2,3, Lidia Ruiz1, Rebeca A. Mees 1, Blazej Baginski 1, Julia R. Flood3, Pau Martin-Malpartida 1, Joan Massagué 4, Yael David ...
7YZE
Crystal structure of the human FoxA2 bound to the TGTTTACT site (forkhead motif GTAAACA)
Article https://doi.org/10.1038/s41467-022-34925-y Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1 Radoslaw Pluta 1,8, Eric Aragón1,8, Nicholas A. Prescott 2,3, Lidia Ruiz1, Rebeca A. Mees 1, Blazej Baginski 1, Julia R. Flood3, Pau Martin-Malpartida 1, Joan Massagué 4, Yael David ...
7YZF
Crystal structure of the human FoxA2 bound to the TGTTTATT site (forkhead motif ATAAACA)
Article https://doi.org/10.1038/s41467-022-34925-y Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1 Radoslaw Pluta 1,8, Eric Aragón1,8, Nicholas A. Prescott 2,3, Lidia Ruiz1, Rebeca A. Mees 1, Blazej Baginski 1, Julia R. Flood3, Pau Martin-Malpartida 1, Joan Massagué 4, Yael David ...
7YZG
Crystal structure of the Xenopus FoxH1 bound to the TGTGGATT site
Article https://doi.org/10.1038/s41467-022-34925-y Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1 Radoslaw Pluta 1,8, Eric Aragón1,8, Nicholas A. Prescott 2,3, Lidia Ruiz1, Rebeca A. Mees 1, Blazej Baginski 1, Julia R. Flood3, Pau Martin-Malpartida 1, Joan Massagué 4, Yael David ...
7YZH
Schistosoma Mansoni Carbonic Anhydrase in complex with 4-oxo-N-(4-sulfamoylphenethyl)-1,3,4,6,7,11b-hexahydro-2H-pyrazino[2,1-a]isoquinoline-2-carbothioamide
RESEARCH PAPER Development of Praziquantel sulphonamide derivatives as antischistosomal drugs Andrea Angelia,b , Marta Ferraronic, Fabrizio Cartaa, Cecile H€aberlid,e , Jennifer Keiserd,e , Gabriele Costantinob and Claudiu T. Supurana aNEUROFARBA Department, Sezione di Scienze Farmaceutiche, University of Florence, Fl...
7YZI
Structure of Mycobacterium tuberculosis adenylyl cyclase Rv1625c / Cya
Mehta, Khanppnavar et al. eLife 2022;11:e77032. DOI: https://doi.org/10.7554/eLife.77032  1 of 21 Structure of Mycobacterium tuberculosis Cya, an evolutionary ancestor of the mammalian membrane adenylyl cyclases Ved Mehta1†, Basavraj Khanppnavar1,2†, Dina Schuster1,2,3, Ilayda Kantarci1, Irene Vercellino1, Angela K...
7YZK
Structure of Mycobacterium tuberculosis adenylyl cyclase Rv1625c / Cya
Mehta, Khanppnavar et al. eLife 2022;11:e77032. DOI: https://doi.org/10.7554/eLife.77032  1 of 21 Structure of Mycobacterium tuberculosis Cya, an evolutionary ancestor of the mammalian membrane adenylyl cyclases Ved Mehta1†, Basavraj Khanppnavar1,2†, Dina Schuster1,2,3, Ilayda Kantarci1, Irene Vercellino1, Angela K...
7YZM
MgADPNP-bound DCCP:DCCP-R complex
Structural basis for coupled ATP-driven electron transfer in the double-cubane cluster protein Jae-Hun Jeounga , Sabine Nicklischa , and Holger Dobbeka,1 Edited by Douglas Rees, HHMI, California Institute of Technology, Pasadena, CA; received February 28, 2022; accepted June 22, 2022 Electron transfers coupled to the h...
7YZN
Structure of C-terminally truncated aIF5B from Pyrococcus abyssi complexed with GTP
6532–6548 Nucleic Acids Research, 2022, Vol. 50, No. 11 Published online 13 June 2022 https://doi.org/10.1093/nar/gkac490 Role of aIF5B in archaeal translation initiation Ramy Kazan1, Gabrielle Bourgeois1, Christine Lazennec-Schurdevin1, Eric Larquet2, Yves Mechulam1,*, Pierre-Damien Coureux1,* and Emmanuelle Schmitt 1...
7YZQ
MgADP-AlF4-bound DCCP:DCCP-R complex
Structural basis for coupled ATP-driven electron transfer in the double-cubane cluster protein Jae-Hun Jeounga , Sabine Nicklischa , and Holger Dobbeka,1 Edited by Douglas Rees, HHMI, California Institute of Technology, Pasadena, CA; received February 28, 2022; accepted June 22, 2022 Electron transfers coupled to the h...
7YZR
50 mM Rb+ soak of beryllium fluoride inhibited Na+,K+-ATPase, E2-BeFx (rigid body model)
The Na+,K+-ATPase in complex with beryllium fluoride mimics an ATPase phosphorylated state Received for publication, April 16, 2022, and in revised form, July 23, 2022 Published, Papers in Press, August 2, 2022, https://doi.org/10.1016/j.jbc.2022.102317 Marlene U. Fruergaard1, Ingrid Dach1, Jacob L. Andersen1,2, Mette O...
7YZS
Crystal structure of the sulfoquinovosyl binding protein SmoF complexed with sulfoquinovose
The sulfoquinovosyl glycerol binding protein SmoF binds and accommodates plant sulfolipids Alexander J.D. Snow a, Mahima Sharma a, James P. Lingford b,c, Yunyang Zhang d, Janice W.-Y. Mui d, Ruwan Epa d, Ethan D. Goddard-Borger b,c, Spencer J. Williams d, Gideon J. Davies a,* a York Structural Biology Laboratory, Depar...
7YZU
Crystal structure of the sulfoquinovosyl binding protein SmoF complexed with SQMe
The sulfoquinovosyl glycerol binding protein SmoF binds and accommodates plant sulfolipids Alexander J.D. Snow a, Mahima Sharma a, James P. Lingford b,c, Yunyang Zhang d, Janice W.-Y. Mui d, Ruwan Epa d, Ethan D. Goddard-Borger b,c, Spencer J. Williams d, Gideon J. Davies a,* a York Structural Biology Laboratory, Depar...
7YZV
Ryegrass mottle virus serine protease domain S159A mutant
Citation: Kalnins, G.; Ludviga, R.; Kalnciema, I.; Resevica, G.; Zeltina, V.; Bogans, J.; Tars, K.; Zeltins, A.; Balke, I. VPg Impact on Ryegrass Mottle Virus Serine-like 3C Protease Proteolysis and Structure. Int. J. Mol. Sci. 2023, 24, 5347. https://doi.org/ 10.3390/ijms24065347 Academic Editor: Irmgard Tegeder Recei...
7YZX
ScpA from Streptococcus pyogenes, D783A mutant.
Data in Brief 46 (2023) 108778 Contents lists available at ScienceDirect Data in Brief journal homepage: www.elsevier.com/locate/dib Data Article X-ray diffraction data for the C5a-peptidase mutant with modified activity and specificity Todd F. Kagawa a , c , ∗, Monica Jain a , Jakki C. Cooney a , b , c , ∗ a Depa...
7YZY
pMMO structure from native membranes by cryoET and STA
nature communications Article https://doi.org/10.1038/s41467-022-32752-9 Structure and activity of particulate methane monooxygenase arrays in methanotrophs Yanan Zhu 1,8, Christopher W. Koo2,8, C. Keith Cassidy 3, Matthew C. Spink4, Tao Ni1, Laura C. Zanetti-Domingues 5, Benji Bateman 5, Marisa L. Martin-Fernandez 5, ...
7Z01
Z-SBTubA4 photoswitch bound to tubulin-DARPin D1 complex
In Vivo Photocontrol of Microtubule Dynamics and Integrity, Migration and Mitosis, by the Potent GFP-Imaging-Compatible Photoswitchable Reagents SBTubA4P and SBTub2M Li Gao, Joyce C. M. Meiring, Adam Varady, Iris E. Ruider, Constanze Heise, Maximilian Wranik, Cecilia D. Velasco, Jennifer A. Taylor, Beatrice Terni, Tobi...
7Z02
Z-SBTub2M photoswitch bound to tubulin-DARPin D1 complex
In Vivo Photocontrol of Microtubule Dynamics and Integrity, Migration and Mitosis, by the Potent GFP-Imaging-Compatible Photoswitchable Reagents SBTubA4P and SBTub2M Li Gao, Joyce C. M. Meiring, Adam Varady, Iris E. Ruider, Constanze Heise, Maximilian Wranik, Cecilia D. Velasco, Jennifer A. Taylor, Beatrice Terni, Tobi...
7Z04
10 mM Rb+ soak of beryllium fluoride inhibited Na+,K+-ATPase, E2-BeFx (rigid body model)
The Na+,K+-ATPase in complex with beryllium fluoride mimics an ATPase phosphorylated state Received for publication, April 16, 2022, and in revised form, July 23, 2022 Published, Papers in Press, August 2, 2022, https://doi.org/10.1016/j.jbc.2022.102317 Marlene U. Fruergaard1, Ingrid Dach1, Jacob L. Andersen1,2, Mette O...
7Z05
White Bream virus N7-Methyltransferase
11186–11198 Nucleic Acids Research, 2022, Vol. 50, No. 19 Published online 21 October 2022 https://doi.org/10.1093/nar/gkac876 A second type of N7-guanine RNA cap methyltransferase in an unusual locus of a large RNA virus genome Ashleigh Shannon 1,†, Bhawna Sama 1,†, Pierre Gauffre 1, Th´eo Guez2, Franc¸oise Debart 2, ...
7Z06
Structure of YwlG (Q2FF14) from Staphylococcus aureus
Bidirectional sequestration between a bacterial hibernation factor and a glutamate metabolizing protein David Ranavaa , Christopher M. Scheidlerb, Martin Pfanzeltc, Michaela Fiedlerc , Stephan A. Sieberc,1, Sabine Schneiderb,1 , and Mee-Ngan F. Yapa,1 Edited by Susan Gottesman, NIH, Bethesda, MD; received April 27, 202...
7Z07
Solution NMR structure of N-acetylglucosaminyltransferase V (GnTV) G26P mutant TMD
1 Vol.:(0123456789) Scientific Reports | (2022) 12:20987 | https://doi.org/10.1038/s41598-022-24772-8 www.nature.com/scientificreports Helical stability of the GnTV transmembrane domain impacts on SPPL3 dependent cleavage Alkmini A. Papadopoulou 1, Walter Stelzer 2, Mara Silber 3,8, Christine Schlosser 1, C...
7Z08
Solution NMR structure of N-acetylglucosaminyltransferase V (GnTV) G22L mutant TMD
1 Vol.:(0123456789) Scientific Reports | (2022) 12:20987 | https://doi.org/10.1038/s41598-022-24772-8 www.nature.com/scientificreports Helical stability of the GnTV transmembrane domain impacts on SPPL3 dependent cleavage Alkmini A. Papadopoulou 1, Walter Stelzer 2, Mara Silber 3,8, Christine Schlosser 1, C...
7Z0B
Solution NMR structure of N-acetylglucosaminyltransferase V (GnTV) G22L and G26L double mutant TMD
1 Vol.:(0123456789) Scientific Reports | (2022) 12:20987 | https://doi.org/10.1038/s41598-022-24772-8 www.nature.com/scientificreports Helical stability of the GnTV transmembrane domain impacts on SPPL3 dependent cleavage Alkmini A. Papadopoulou 1, Walter Stelzer 2, Mara Silber 3,8, Christine Schlosser 1, C...
7Z0F
CPAP:S-TUBULIN:IIH5 ALPHAREP COMPLEX
Structural convergence for tubulin binding of CPAP and vinca domain microtubule inhibitors Valerie Campanaccia , Agathe Urvoasa , Liza Ammar Khodjaa , Magali Aumont-Nicaisea , Magali Noiraya , Sylvie Lachkarb , Patrick A. Curmic, Philippe Minarda, and Benoît Giganta,1 Edited by Eva Nogales, University of California, B...
7Z0G
CPAP:TUBULIN:IE5 ALPHAREP COMPLEX P1 SPACE GROUP
Structural convergence for tubulin binding of CPAP and vinca domain microtubule inhibitors Valerie Campanaccia , Agathe Urvoasa , Liza Ammar Khodjaa , Magali Aumont-Nicaisea , Magali Noiraya , Sylvie Lachkarb , Patrick A. Curmic, Philippe Minarda, and Benoît Giganta,1 Edited by Eva Nogales, University of California, B...
7Z0H
Structure of yeast RNA Polymerase III-Ty1 integrase complex at 2.6 A (focus subunit AC40).
Article https://doi.org/10.1038/s41467-023-37109-4 Structural basis of Ty1 integrase tethering to RNA polymerase III for targeted retrotransposon integration Phong Quoc Nguyen 1,2,6, Sonia Huecas1,6, Amna Asif-Laidin 3,6, Adrián Plaza-Pegueroles 1, Beatrice Capuzzi3, Noé Palmic3, Christine Conesa4, Joël Acker 4, Juan R...
7Z0I
human PEX13 SH3 domain
Article https://doi.org/10.1038/s41467-024-47605-w Modulation of peroxisomal import by the PEX13 SH3 domain and a proximal FxxxF binding motif Stefan Gaussmann 1,2,5, Rebecca Peschel 3,5, Julia Ott3, Krzysztof M. Zak2, Judit Sastre4, Florent Delhommel 1,2, Grzegorz M. Popowicz 1,2, Job Boekhoven 4, Wolfgang Schliebs3, ...
7Z0J
human PEX13 SH3 domain in complex with internal FxxxF motif
Article https://doi.org/10.1038/s41467-024-47605-w Modulation of peroxisomal import by the PEX13 SH3 domain and a proximal FxxxF binding motif Stefan Gaussmann 1,2,5, Rebecca Peschel 3,5, Julia Ott3, Krzysztof M. Zak2, Judit Sastre4, Florent Delhommel 1,2, Grzegorz M. Popowicz 1,2, Job Boekhoven 4, Wolfgang Schliebs3, ...
7Z0K
human PEX13 SH3 in complex with PEX5 W4 (WxxxF/Y) motif
Article https://doi.org/10.1038/s41467-024-47605-w Modulation of peroxisomal import by the PEX13 SH3 domain and a proximal FxxxF binding motif Stefan Gaussmann 1,2,5, Rebecca Peschel 3,5, Julia Ott3, Krzysztof M. Zak2, Judit Sastre4, Florent Delhommel 1,2, Grzegorz M. Popowicz 1,2, Job Boekhoven 4, Wolfgang Schliebs3, ...
7Z0L
IL-27 signalling complex
Article Structural insights into the assembly and activation of the IL-27 signaling complex Yibo Jin1,† , Paul K Fyfe2,† , Scott Gardner1 , Stephan Wilmes2 , Doryen Bubeck1,*,‡ & Ignacio Moraga2,**,‡ Abstract Interleukin 27 (IL-27) is a heterodimeric cytokine that elicits potent immunosuppressive responses. Comprised o...
7Z0N
Structure-Based Design of a Novel Class of Autotaxin Inhibitors Based on Endogenous Allosteric Modulators
Structure-Based Design of a Novel Class of Autotaxin Inhibitors Based on Endogenous Allosteric Modulators Jennifer M. Clark,∥Fernando Salgado-Polo,∥Simon J. F. Macdonald, Tim N. Barrett, Anastassis Perrakis,* and Craig Jamieson* Cite This: J. Med. Chem. 2022, 65, 6338−6351 Read Online ACCESS Metrics & More Article Reco...
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Structure of transcription factor UAF in complex with TBP and 35S rRNA promoter DNA
Baudin et al., Sci. Adv. 8, eabn5725 (2022) 20 April 2022 SCIE N C E A D V A NCES | RESEA R CH A RT ICL E 1 of 9 BI O PH YSICS Mechanism of RNA polymerase I selection by transcription factor UAF Florence Baudin1†, Brice Murciano1†, Herman K. H. Fung1†, Simon A. Fromm1,2†, Simone Mattei1,2, Julia Mahamid1, Christ...
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SARS-COV2 Main Protease in complex with inhibitor MG-131
Citation: Göhl, M.; Zhang, L.; El Kilani, H.; Sun, X.; Zhang, K.; Brönstrup, M.; Hilgenfeld, R. From Repurposing to Redesign: Optimization of Boceprevir to Highly Potent Inhibitors of the SARS-CoV-2 Main Protease. Molecules 2022, 27, 4292. https://doi.org/10.3390/ molecules27134292 Academic Editor: Joel D. A. Tyndall R...
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MHC-II dynamics are maintained in HLA-DR allotypes to ensure catalyzed peptide exchange
Nature Chemical Biology | Volume 19 | October 2023 | 1196–1204 1196 nature chemical biology Article https://doi.org/10.1038/s41589-023-01316-3 MHC-II dynamics are maintained in HLA-DR allotypes to ensure catalyzed peptide exchange Esam T. Abualrous    1,2,3,10, Sebastian Stolzenberg2,10, Jana Sticht    1,4,10, Marek...
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Structure of the Escherichia coli formate hydrogenlyase complex (anaerobic preparation, without formate dehydrogenase H)
nature communications Article https://doi.org/10.1038/s41467-022-32831-x Structure of the membrane-bound formate hydrogenlyase complex from Escherichia coli Ralf Steinhilper 1, Gabriele Höff2, Johann Heider2,3 & Bonnie J. Murphy 1 The prototypical hydrogen-producing enzyme, the membrane-bound for- mate hydrogenlyase (F...
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Structure of the Escherichia coli formate hydrogenlyase complex (aerobic preparation, composite structure)
nature communications Article https://doi.org/10.1038/s41467-022-32831-x Structure of the membrane-bound formate hydrogenlyase complex from Escherichia coli Ralf Steinhilper 1, Gabriele Höff2, Johann Heider2,3 & Bonnie J. Murphy 1 The prototypical hydrogen-producing enzyme, the membrane-bound for- mate hydrogenlyase (F...
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A mutant of the nitrile hydratase from Geobacillus pallidus having enhanced thermostability
Engineering enhanced thermostability into the Geobacillus pallidus nitrile hydratase Jennifer C. Van Wyk a,b,e,*, B. Trevor Sewell c,f, Michael J. Danson d, Tsepo L. Tsekoa a,b,g, Muhammed F. Sayed a,b, Don A. Cowan a,b,h a Institute for Microbial Biotechnology and Metagenomics, University of the Western Cape, Bellvill...
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E. coli NfsA bound to NADP+
RESEARCH ARTICLE The 3D-structure, kinetics and dynamics of the E. coli nitroreductase NfsA with NADP+ provide glimpses of its catalytic mechanism Scott A. White1 , Andrew J. Christofferson2 , Alastair I. Grainger1,*, Martin A. Day1,3,†, David Jarrom1,‡ , Antonio E. Graziano1,¶, Peter F. Searle3 and Eva I. Hyde1 1 Scho...
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THSC20.HVTR26 Fab bound to SARS-CoV-2 Receptor Binding Domain
RESEARCH ARTICLE A combination of potently neutralizing monoclonal antibodies isolated from an Indian convalescent donor protects against the SARS-CoV-2 Delta variant Nitin Hingankar1☯, Suprit Deshpande1☯, Payel Das1, Zaigham Abbas Rizvi2,3, Constantinos Kurt Wibmer4, Poppy Mashilo4, Mohammed Yousuf Ansari1, Alison Bur...
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THSC20.HVTR04 Fab bound to SARS-CoV-2 Receptor Binding Domain
RESEARCH ARTICLE A combination of potently neutralizing monoclonal antibodies isolated from an Indian convalescent donor protects against the SARS-CoV-2 Delta variant Nitin Hingankar1☯, Suprit Deshpande1☯, Payel Das1, Zaigham Abbas Rizvi2,3, Constantinos Kurt Wibmer4, Poppy Mashilo4, Mohammed Yousuf Ansari1, Alison Bur...
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Abortive infection DNA polymerase AbiK from Lactococcus lactis, Y44F variant
10026–10040 Nucleic Acids Research, 2022, Vol. 50, No. 17 Published online 15 September 2022 https://doi.org/10.1093/nar/gkac772 Mechanism of protein-primed template-independent DNA synthesis by Abi polymerases Małgorzata Figiel1,*,†, Marta Gapi´nska1,†, Mariusz Czarnocki-Cieciura1, Weronika Zajko1, Małgorzata Sroka1, ...
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Structure of substrate bound DRG1 (AFG2)
Articles https://doi.org/10.1038/s41594-022-00832-5 1Institute of Molecular Biosciences, University of Graz, Graz, Austria. 2BioTechMed-Graz, Graz, Austria. 3Research Institute of Molecular Pathology (IMP), Vienna BioCenter, Vienna, Austria. 4Institute of Science and Technology Austria, Klosterneuburg, Austria. 5Depar...
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VAR2 complex with PAM1.4
RESEARCH ARTICLE Cryo-EM reveals the conformational epitope of human monoclonal antibody PAM1.4 broadly reacting with polymorphic malarial protein VAR2CSA Sai Sundar Rajan Raghavan1, Robert Dagil1, Mary Lopez-Perez1, Julian Conrad2, Maria Rosaria Bassi1, Maria del Pilar Quintana1, Swati Choudhary1, Tobias Gustavsson1, ...
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S. cerevisiae CMGE dimer nucleating origin DNA melting
Nature  |  Vol 606  |  30 June 2022  |  1007 Article Mechanism of replication origin melting nucleated by CMG helicase assembly Jacob S. Lewis1, Marta H. Gross2,5, Joana Sousa1,4,5, Sarah S. Henrikus1, Julia F. Greiwe1, Andrea Nans3, John F. X. Diffley2 & Alessandro Costa1 ✉ The activation of eukaryotic origins of re...
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Cryo-EM structure of Torpedo nicotinic acetylcholine receptor in complex with a short-chain neurotoxin.
nature communications Article https://doi.org/10.1038/s41467-022-32174-7 The molecular mechanism of snake short- chain α-neurotoxin binding to muscle-type nicotinic acetylcholine receptors Mieke Nys 1,8 , Eleftherios Zarkadas 2,3,8, Marijke Brams 1, Aujan Mehregan 1, Kumiko Kambara 4, Jeroen Kool 5, Nicholas R. Casewel...
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E. coli C-P lyase bound to a PhnK/PhnL dual ABC dimer and ADP + Pi
Article https://doi.org/10.1038/s41467-023-36604-y Structural remodelling of the carbon–phosphorus lyase machinery by a dual ABC ATPase Søren K. Amstrup1,3, Sui Ching Ong1, Nicholas Sofos1,3, Jesper L. Karlsen1, Ragnhild B. Skjerning1, Thomas Boesen 2, Jan J. Enghild 1, Bjarne Hove-Jensen1 & Ditlev E. Brodersen 1 In Es...
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E. coli C-P lyase bound to PhnK/PhnL dual ABC dimer with AMPPNP and PhnK E171Q mutation
Article https://doi.org/10.1038/s41467-023-36604-y Structural remodelling of the carbon–phosphorus lyase machinery by a dual ABC ATPase Søren K. Amstrup1,3, Sui Ching Ong1, Nicholas Sofos1,3, Jesper L. Karlsen1, Ragnhild B. Skjerning1, Thomas Boesen 2, Jan J. Enghild 1, Bjarne Hove-Jensen1 & Ditlev E. Brodersen 1 In Es...
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E. coli C-P lyase bound to a PhnK ABC dimer in an open conformation
Article https://doi.org/10.1038/s41467-023-36604-y Structural remodelling of the carbon–phosphorus lyase machinery by a dual ABC ATPase Søren K. Amstrup1,3, Sui Ching Ong1, Nicholas Sofos1,3, Jesper L. Karlsen1, Ragnhild B. Skjerning1, Thomas Boesen 2, Jan J. Enghild 1, Bjarne Hove-Jensen1 & Ditlev E. Brodersen 1 In Es...
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E. coli C-P lyase bound to a PhnK ABC dimer and ATP
Article https://doi.org/10.1038/s41467-023-36604-y Structural remodelling of the carbon–phosphorus lyase machinery by a dual ABC ATPase Søren K. Amstrup1,3, Sui Ching Ong1, Nicholas Sofos1,3, Jesper L. Karlsen1, Ragnhild B. Skjerning1, Thomas Boesen 2, Jan J. Enghild 1, Bjarne Hove-Jensen1 & Ditlev E. Brodersen 1 In Es...
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E. coli C-P lyase bound to a single PhnK ABC domain
Article https://doi.org/10.1038/s41467-023-36604-y Structural remodelling of the carbon–phosphorus lyase machinery by a dual ABC ATPase Søren K. Amstrup1,3, Sui Ching Ong1, Nicholas Sofos1,3, Jesper L. Karlsen1, Ragnhild B. Skjerning1, Thomas Boesen 2, Jan J. Enghild 1, Bjarne Hove-Jensen1 & Ditlev E. Brodersen 1 In Es...
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Nanobody H11 and F2 bound to RBD
Correlation between the binding affinity and the conformational entropy of nanobody SARS-CoV-2 spike protein complexes Halina Mikolajeka,b,1 , Miriam Weckenerc,1 , Z. Faidon Brotzakisd,1, Jiandong Huob,c,e,1, Evmorfia V. Dalietouc,1, Audrey Le Basb,c,1, Pietro Sormannid , Peter J. Harrisona,b, Philip N. Wardb,c , Steven...
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Nanobody H11-A10 and F2 bound to RBD
Correlation between the binding affinity and the conformational entropy of nanobody SARS-CoV-2 spike protein complexes Halina Mikolajeka,b,1 , Miriam Weckenerc,1 , Z. Faidon Brotzakisd,1, Jiandong Huob,c,e,1, Evmorfia V. Dalietouc,1, Audrey Le Basb,c,1, Pietro Sormannid , Peter J. Harrisona,b, Philip N. Wardb,c , Steven...
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Nanobody H11-B5 and H11-F2 bound to RBD
Correlation between the binding affinity and the conformational entropy of nanobody SARS-CoV-2 spike protein complexes Halina Mikolajeka,b,1 , Miriam Weckenerc,1 , Z. Faidon Brotzakisd,1, Jiandong Huob,c,e,1, Evmorfia V. Dalietouc,1, Audrey Le Basb,c,1, Pietro Sormannid , Peter J. Harrisona,b, Philip N. Wardb,c , Steven...
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Nanobody H11-H6 bound to RBD
Correlation between the binding affinity and the conformational entropy of nanobody SARS-CoV-2 spike protein complexes Halina Mikolajeka,b,1 , Miriam Weckenerc,1 , Z. Faidon Brotzakisd,1, Jiandong Huob,c,e,1, Evmorfia V. Dalietouc,1, Audrey Le Basb,c,1, Pietro Sormannid , Peter J. Harrisona,b, Philip N. Wardb,c , Steven...
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Nanobody H11-H4 Q98R H100E bound to RBD
Correlation between the binding affinity and the conformational entropy of nanobody SARS-CoV-2 spike protein complexes Halina Mikolajeka,b,1 , Miriam Weckenerc,1 , Z. Faidon Brotzakisd,1, Jiandong Huob,c,e,1, Evmorfia V. Dalietouc,1, Audrey Le Basb,c,1, Pietro Sormannid , Peter J. Harrisona,b, Philip N. Wardb,c , Steven...
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VAR2CSA APO
RESEARCH ARTICLE Cryo-EM reveals the conformational epitope of human monoclonal antibody PAM1.4 broadly reacting with polymorphic malarial protein VAR2CSA Sai Sundar Rajan Raghavan1, Robert Dagil1, Mary Lopez-Perez1, Julian Conrad2, Maria Rosaria Bassi1, Maria del Pilar Quintana1, Swati Choudhary1, Tobias Gustavsson1, ...
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Escherichia coli periplasmic phytase AppA, complex with phosphate
Citation: Acquistapace, I.M.; Thompson, E.J.; Kühn, I.; Bedford, M.R.; Brearley, C.A.; Hemmings, A.M. Insights to the Structural Basis for the Stereospecificity of the Escherichia coli Phytase, AppA. Int. J. Mol. Sci. 2022, 23, 6346. https://doi.org/10.3390/ ijms23116346 Academic Editors: Antonio Zuorro, Yung-Chuan Liu ...
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Crystal structure of the SPOC domain of human SHARP (SPEN) in complex with RNA polymerase II CTD heptapeptide phosphorylated on Ser5
Article https://doi.org/10.1038/s41467-023-35853-1 The SPOC domain is a phosphoserine binding module that bridges transcription machinery with co- and post-transcriptional regulators Lisa-Marie Appel 1,2,3, Vedran Franke 4, Johannes Benedum 1,2,3,5, Irina Grishkovskaya 6, Xué Strobl3,5, Anton Polyansky 6, Gregor Ammann...
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X-ray crystal structure of SLPYL1-E151D mutant
ORIGINAL RESEARCH published: 06 June 2022 doi: 10.3389/fpls.2022.884029 Edited by: Raul Antonio Sperotto, Universidade do Vale do Taquari - Univates, Brazil Reviewed by: Guangfu Yang, Central China Normal University, China Anil Kumar Singh, Academy of Scientific and Innovative Research (AcSIR), India *Correspondence: Ar...
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X-ray crystal structure of SLPYL1-E151D mutant with NIO molecules
ORIGINAL RESEARCH published: 06 June 2022 doi: 10.3389/fpls.2022.884029 Edited by: Raul Antonio Sperotto, Universidade do Vale do Taquari - Univates, Brazil Reviewed by: Guangfu Yang, Central China Normal University, China Anil Kumar Singh, Academy of Scientific and Innovative Research (AcSIR), India *Correspondence: Ar...
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X-ray crystal structure of SLPYL1-E151D mutant ABA complex
ORIGINAL RESEARCH published: 06 June 2022 doi: 10.3389/fpls.2022.884029 Edited by: Raul Antonio Sperotto, Universidade do Vale do Taquari - Univates, Brazil Reviewed by: Guangfu Yang, Central China Normal University, China Anil Kumar Singh, Academy of Scientific and Innovative Research (AcSIR), India *Correspondence: Ar...
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X-ray crystal structure of SLPYL1-NIO complex
ORIGINAL RESEARCH published: 06 June 2022 doi: 10.3389/fpls.2022.884029 Edited by: Raul Antonio Sperotto, Universidade do Vale do Taquari - Univates, Brazil Reviewed by: Guangfu Yang, Central China Normal University, China Anil Kumar Singh, Academy of Scientific and Innovative Research (AcSIR), India *Correspondence: Ar...
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Connexin43 gap junction channel structure in digitonin
Qi, Acosta Gutierrez et al. eLife 2023;12:RP87616. DOI: https://doi.org/10.7554/eLife.87616  1 of 27 Structure of the connexin-­43 gap junction channel in a putative closed state Chao Qi1,2†, Silvia Acosta Gutierrez3,4†, Pia Lavriha1,2, Alaa Othman5, Diego Lopez-­Pigozzi6,7, Erva Bayraktar7, Dina Schuster1,2,5, Paol...
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Biochemical implications of the substitution of a unique cysteine residue in sugar beet phytoglobin BvPgb 1.2
Citation: Christensen, S.; Groth, L.; Leiva-Eriksson, N.; Nyblom, M.; Bülow, L. Oxidative Implications of Substituting a Conserved Cysteine Residue in Sugar Beet Phytoglobin BvPgb 1.2. Antioxidants 2022, 11, 1615. https://doi.org/10.3390/ antiox11081615 Academic Editor: Giorgio Ricci Received: 29 June 2022 Accepted: 17...
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PARP15 catalytic domain in complex with OUL208
[1,2,4]Triazolo[3,4‑b]benzothiazole Scaffold as Versatile Nicotinamide Mimic Allowing Nanomolar Inhibition of Different PARP Enzymes Sudarshan Murthy,⊥Maria Giulia Nizi,⊥Mirko M. Maksimainen,⊥Serena Massari, Juho Alaviuhkola, Barbara E. Lippok, Chiara Vagaggini, Sven T. Sowa, Albert Galera-Prat, Yashwanth Ashok, Harika...
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PARP15 catalytic domain in complex with OUL246
[1,2,4]Triazolo[3,4‑b]benzothiazole Scaffold as Versatile Nicotinamide Mimic Allowing Nanomolar Inhibition of Different PARP Enzymes Sudarshan Murthy,⊥Maria Giulia Nizi,⊥Mirko M. Maksimainen,⊥Serena Massari, Juho Alaviuhkola, Barbara E. Lippok, Chiara Vagaggini, Sven T. Sowa, Albert Galera-Prat, Yashwanth Ashok, Harika...
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Crystal structure of human Gasdermin D complexed with nanobodies VHH-2 and VHH-6
Article https://doi.org/10.1038/s41467-023-43707-z Pyroptosis inhibiting nanobodies block Gasdermin D pore formation Anja Kopp 1,2, Gregor Hagelueken 1, Isabell Jamitzky 1, Jonas Moecking 1, Lisa D. J. Schiffelers 3, Florian I. Schmidt 3 & Matthias Geyer 1 Human Gasdermin D (GSDMD) is a key mediator of pyroptosis, a pr...
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PARP15 catalytic domain in complex with OUL245
[1,2,4]Triazolo[3,4‑b]benzothiazole Scaffold as Versatile Nicotinamide Mimic Allowing Nanomolar Inhibition of Different PARP Enzymes Sudarshan Murthy,⊥Maria Giulia Nizi,⊥Mirko M. Maksimainen,⊥Serena Massari, Juho Alaviuhkola, Barbara E. Lippok, Chiara Vagaggini, Sven T. Sowa, Albert Galera-Prat, Yashwanth Ashok, Harika...
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70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain
ARTICLE Modulating co-translational protein folding by rational design and ribosome engineering Minkoo Ahn 1,6, Tomasz Włodarski1,6, Alkistis Mitropoulou1,6, Sammy H. S. Chan 1, Haneesh Sidhu1, Elena Plessa 1, Thomas A. Becker 2, Nediljko Budisa3,4, Christopher A. Waudby 1, Roland Beckmann 2, Anaïs M. E. Cassaignau 1, ...