TEXT stringlengths 0 3.96M | YEAR stringclasses 6
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|---|---|---|---|---|---|
1
Multiple PLCβ signaling pathways in taste receptor cells contribute to
the detection of bitter, sweet and umami stimuli
Debarghya Dutta Banik1, Eric D. Benfey1, Laura E. Martin2, Kristen E. Kay2, Gregory C.
Loney2, Amy R. Nelson1, Zachary C. Ahart1, Barrett T. Kemp1, Bailey R. Kemp1, Aurelie
Vandenbeuch3, An... | 2019 | Multiple PLCβ signaling pathways in taste receptor cells contribute to the detection of bitter, sweet and umami stimuli | 10.1101/660589 | [
"Banik Debarghya Dutta",
"Benfey Eric D.",
"Martin Laura E.",
"Kay Kristen E.",
"Loney Gregory C.",
"Nelson Amy R.",
"Ahart Zachary C.",
"Kemp Barrett T.",
"Kemp Bailey R.",
"Vandenbeuch Aurelie",
"Torregrossa Ann-Marie",
"Medler Kathryn F."
] | creative-commons |
Classification of clear cell renal cell carcinoma based on PKM alternative
splicing
Xiangyu Li1, Beste Turanli2, Kajetan Juszczak1, Woonghee Kim1, Muhammad Arif1, Yusuke
Sato3,4, Seishi Ogawa3,5, Hasan Turkez6, Jens Nielsen7, Jan Boren8, Mathias Uhlen1, Cheng
Zhang1,9,*, Adil Mardinoglu1,10,*
1Science for Life Lab... | 2019 | Classification of clear cell renal cell carcinoma based on alternative splicing | 10.1101/823336 | [
"Li Xiangyu",
"Turanli Beste",
"Juszczak Kajetan",
"Kim Woonghee",
"Arif Muhammad",
"Sato Yusuke",
"Ogawa Seishi",
"Turkez Hasan",
"Nielsen Jens",
"Boren Jan",
"Uhlen Mathias",
"Zhang Cheng",
"Mardinoglu Adil"
] | creative-commons |
1
Title: Mitf links neuronal activity and long-term homeostatic intrinsic plasticity
Abbreviated title: Mitf regulates intrinsic plasticity
Diahann A. M. Atacho1,3, Hallur Reynisson2, Anna Þóra Pétursdóttir1,3, Thor Eysteinsson2,
Eiríkur Steingrímsson3, Pétur Henry Petersen1,4*
1Department of Anatomy; 2Departme... | 2019 | Mitf links neuronal activity and long-term homeostatic intrinsic plasticity | 10.1101/507640 | [
"Atacho Diahann A. M.",
"Reynisson Hallur",
"Pétursdóttir Anna Þóra",
"Eysteinsson Thor",
"Steingrímsson Eiríkur",
"Henry Petersen Pétur"
] | null |
1
Rfx6 promotes the differentiation of peptide-secreting enteroendocrine cells while
repressing genetic programs controlling serotonin production
Julie Piccand1,2,3,4#, Constance Vagne1,2,3,4#, Florence Blot1,2,3,4#, Aline Meunier1,2,3,4, Anthony
Beucher1,2,3,4, Perrine Strasser1,2,3,4, Mari L. Lund5, S... | 2019 | Rfx6 promotes the differentiation of peptide-secreting enteroendocrine cells while repressing genetic programs controlling serotonin production | 10.1101/704924 | [
"Piccand Julie",
"Vagne Constance",
"Blot Florence",
"Meunier Aline",
"Beucher Anthony",
"Strasser Perrine",
"Lund Mari L.",
"Ghimire Sabitri",
"Nivlet Laure",
"Lapp Céline",
"Petersen Natalia",
"Engelstoft Maja S.",
"Thibault-Carpentier Christelle",
"Keime Céline",
"Correa Sara Jimenez"... | null |
The role of ppGpp in modulating the evolution of fluoroquinolone-sensitive
Shigella sonnei to develop antibiotic resistance
Wong Bao Chi1†, Soffi Kei Kei Law1†, Muhammad Zarul Hanifah Md Zoqratt1, 2, Qasim Ayub1, 2, Tan
Hock Siew1, 3*
1 School of Science, Monash University Malaysia, 47500 Bandar Sunway, Selangor Darul ... | 2022 | The role of ppGpp in modulating the evolution of fluoroquinolone-sensitive to develop antibiotic resistance | 10.1101/2020.12.08.416974 | [
"Chi Wong Bao",
"Law Soffi Kei Kei",
"Md Zoqratt Muhammad Zarul Hanifah",
"Ayub Qasim",
"Siew Tan Hock"
] | null |
1
Celik et al.
A Humanized Animal Model Predicts Clonal Evolution and
Therapeutic Vulnerabilities in Myeloproliferative Neoplasms
Hamza Celik1, Ethan Krug1, Christine RC Zhang1, Wentao Han1, Nancy Issa1, Won Kyun Koh1,
Hassan Bjeije1, Ostap Kukhar1, Maggie Allen2, Tindao Li3, Daniel AC Fisher2, Jared Fowles2,... | 2020 | A Humanized Animal Model Predicts Clonal Evolution and Therapeutic Vulnerabilities in Myeloproliferative Neoplasms | 10.1101/2020.11.12.378810 | [
"Celik Hamza",
"Krug Ethan",
"Zhang Christine RC",
"Han Wentao",
"Issa Nancy",
"Koh Won Kyun",
"Bjeije Hassan",
"Kukhar Ostap",
"Allen Maggie",
"Li Tindao",
"Fisher Daniel AC",
"Fowles Jared",
"Wong Terrence N.",
"Stubbs Matthew C.",
"Koblish Holly K.",
"Oh Stephen T.",
"Challen Gran... | creative-commons |
Effect of TSS on anti-CVB3 through TLR3 pathway
Xiao-han Zheng1,Ming-ming Yuan2,Yuan Wang3, Jing Zhou2* and Lei Zhang1,2,3*1
ABSTRACT Toll-like receptors (TLRs) can recognize molecular patterns associated with
microorganisms and induce immune responses. TLR3 is responsible for recognizing viruses
and making hos... | 2022 | Effect of TSS on anti-CVB3 through TLR3 pathway | 10.1101/2022.03.28.486160 | [
"Zheng Xiao-han",
"Yuan Ming-ming",
"Wang Yuan",
"Zhou Jing",
"Zhang Lei"
] | creative-commons |
Title: Hemispheric Asymmetries of Individual Differences in Functional Connectivity
Authors: Diana C. Perez1, Ally Dworetsky1, Rodrigo M. Braga2,3, Mark Beeman1,3, Caterina
Gratton*1,2,3
Affiliations: Departments of Psychology1, Neurology2, Interdepartmental Neuroscience
Program3 – Northwestern University
*Cor... | 2022 | Hemispheric Asymmetries of Individual Differences in Functional Connectivity | 10.1101/2022.04.08.487658 | [
"Perez Diana C.",
"Dworetsky Ally",
"Braga Rodrigo M.",
"Beeman Mark",
"Gratton Caterina"
] | creative-commons |
1
A Single-Molecule Long-Read Survey of Human
Transcriptomes using LoopSeq Synthetic Long
Read Sequencing
1Indira Wu, 1Hee Shin Kim, 1Tuval Ben-Yehezkel*
*Corresponding author: Tuval Ben-Yehezkel, tuval@loopgenomics.com
1Loop Genomics, San Jose, CA, 95138
Abstract
State-of-the-art short-read transcriptome... | 2019 | A Single-Molecule Long-Read Survey of Human Transcriptomes using LoopSeq Synthetic Long Read Sequencing | 10.1101/532135 | [
"Wu Indira",
"Kim Hee Shin",
"Ben-Yehezkel Tuval"
] | creative-commons |
Optogenetic control of beta-carotene bioproduction in yeast across
multiple lab-scales
Sylvain Pouzet1, Jessica Cruz-Ramon1, Matthias Le Bec1, Céline Cordier1, Alvaro Banderas1,
1
Simon Barral1, Benoit Sorre1, Sara Castano-Cerezo2, Thomas Lautier2, Gilles Truan2 and
2
Pascal Hersen1*
3
1 Institut Curie, U... | 2022 | Optogenetic control of beta-carotene bioproduction in yeast across multiple lab-scales | 10.1101/2022.10.31.514479 | [
"Pouzet Sylvain",
"Cruz-Ramon Jessica",
"Bec Matthias Le",
"Cordier Céline",
"Banderas Alvaro",
"Barral Simon",
"Sorre Benoit",
"Castano-Cerezo Sara",
"Lautier Thomas",
"Truan Gilles",
"Hersen Pascal"
] | creative-commons |
COMMUNICATION
Please do not adjust margins
Please do not adjust margins
Received 00th January 20xx,
Accepted 00th January 20xx
DOI: 10.1039/x0xx00000x
Probing protein-protein and protein-substrate interactions in the
dynamic membrane-associated ternary complex of Cytochromes
P450, b5, and Reductase
K... | 2019 | Probing protein-protein and protein-substrate interactions in the dynamic membrane-associated ternary complex of Cytochromes P450, b5, and Reductase | 10.1101/707729 | [
"Gentry Katherine A.",
"Anantharamaiah G. M.",
"Ramamoorthy Ayyalusamy"
] | creative-commons |
Underlying Genomic Mechanism for Cell-Fate Change from Embryo to
Cancer Development
Masa Tsuchiya1*, Alessandro Giuliani2 and Kenichi Yoshikawa3
1 SEIKO Life Science Laboratory, SRI, Osaka 540-659, Japan
2 Environment and Health Department, Istituto Superiore di Sanitá, 00161 Rome, Italy;
alessandro.giulia... | 2019 | Underlying Genomic Mechanism for Cell-Fate Change from Embryo to Cancer Development | 10.1101/637033 | [
"Tsuchiya Masa",
"Giuliani Alessandro",
"Yoshikawa Kenichi"
] | creative-commons |
Chromosomal-scale De novo Genome Assemblies of
Cynomolgus Macaque and Common Marmoset
Vasanthan Jayakumar1, Osamu Nishimura2, Mitsutaka Kadota2, Naoki Hirose3,4, Hiromi
Sano3,5, Yasuhiro Murakawa5,6,7,8,9, Yumiko Yamamoto10, Masataka Nakaya11,12,
Tomoyuki Tsukiyama11,12, Yasunari Seita11, Shinichiro Nakamura11,12... | 2020 | Chromosomal-scale Genome Assemblies of Cynomolgus Macaque and Common Marmoset | 10.1101/2020.12.04.411207 | [
"Jayakumar Vasanthan",
"Nishimura Osamu",
"Kadota Mitsutaka",
"Hirose Naoki",
"Sano Hiromi",
"Murakawa Yasuhiro",
"Yamamoto Yumiko",
"Nakaya Masataka",
"Tsukiyama Tomoyuki",
"Seita Yasunari",
"Nakamura Shinichiro",
"Kawai Jun",
"Sasaki Erika",
"Ema Masatsugu",
"Kuraku Shigehiro",
"Kawa... | creative-commons |
FIST-nD: A tool for n-dimensional spatial
transcriptomics data imputation via graph-regularized
tensor completion
Thomas Karl Atkins1, Tianci Song1, Rui Kuang∗1
1Department of Computer Science and Engineering, University of
Minnesota Twin Cities
Abstract
Functional interpretation of spatial transcriptomics data usually... | 2022 | FIST-D: A tool for -dimensional spatial transcriptomics data imputation via graph-regularized tensor completion | 10.1101/2022.10.12.511928 | [
"Atkins Thomas Karl",
"Song Tianci",
"Kuang Rui"
] | null |
Age-associated reduction of nuclear shape dynamics in excitatory neurons
1
of the visual cortex
2
3
Tanita Frey1,2, Tomonari Murakami3,4, Koichiro Maki5, Takumi Kawaue6, Ayaka
4
Sugai1,7, Naotaka, Nakazawa6,8, Taiji Adachi5, Mineko Kengaku6, Kenichi
5
Ohki3,4,9, Yukiko Gotoh1,9, and Yusuke Kishi1,7*
6
7 ... | 2022 | Age-associated reduction of nuclear shape dynamics in excitatory neurons of the visual cortex | 10.1101/2022.08.22.504704 | [
"Frey Tanita",
"Murakami Tomonari",
"Maki Koichiro",
"Kawaue Takumi",
"Sugai Ayaka",
"Nakazawa Naotaka",
"Adachi Taiji",
"Kengaku Mineko",
"Ohki Kenichi",
"Gotoh Yukiko",
"Kishi Yusuke"
] | null |
1
1
Validation of tWO novel primers for THE promising amplification of the mitogenomic
Cytochrome c Oxidase subunit I (COI) barcoding region in Artemia aff. sinica
(Branchiopoda, Anostraca)
BY
Alireza Asem1,2,3), Chun-Zheng Fu4,7), Ning Yang2,3), Amin Eimanifar5), Ying Cao2,3), Pei-
Zheng Wang6) and Chun-Yang S... | 2022 | Validation of tWO novel primers for THE promising amplification of the mitogenomic Cytochrome c Oxidase subunit I () barcoding region in aff. (Branchiopoda, Anostraca) | 10.1101/2022.05.07.491003 | [
"Asem Alireza",
"Fu Chun-Zheng",
"Yang Ning",
"Eimanifar Amin",
"Cao Ying",
"Wang Pei-Zheng",
"Shen Chun-Yang"
] | null |
1
Hormonal regulation of the BRC1-dependent strigolactone transcriptome involved in shoot
branching responses
Stephanie C. Kerr1,3, Alexandre de Saint Germain2, Indeewari M. Dissanayanke1, Michael G.
Mason1, Elizabeth A. Dun1, Christine A. Beveridge1*†, Milos Tanurdzic1*†
1 The University of Queensland, School ... | 2020 | Hormonal regulation of the BRC1-dependent strigolactone transcriptome involved in shoot branching responses | 10.1101/2020.03.19.999581 | [
"Kerr Stephanie C.",
"de Saint Germain Alexandre",
"Dissanayanke Indeewari M.",
"Mason Michael G.",
"Dun Elizabeth A.",
"Beveridge Christine A.",
"Tanurdzic Milos"
] | null |
An Interplay of Phytoplankton Donor Species and Transformation of Released
1
Compounds over Time Defines Bacterial Communities Following Phytoplankton
2
DOMp Pulses
3
4
Running title: short-term determination of bacteria by phytoplankton
5
Falk Eigemanna,b#, Eyal Rahavc, Hans-Peter Grossartd,e, Dikla Aharon... | 2022 | An Interplay of Phytoplankton Donor Species and Transformation of Released Compounds over Time Defines Bacterial Communities Following Phytoplankton DOMp Pulses | 10.1101/2022.12.23.521850 | [
"Eigemann Falk",
"Rahav Eyal",
"Grossart Hans-Peter",
"Aharonovich Dikla",
"Voss Maren",
"Sher Daniel"
] | creative-commons |
Prostaglandin analog effects on cerebrospinal fluid reabsorption via nasal mucosa
Short title: Prostaglandins and CSF absorption
Michelle G. Pedler1, J. Mark Petrash1, and Prem S. Subramanian1,2,3,4
Departments of 1Ophthalmology, 2Neurology, and 3Neurosurgery, University of Colorado School
of Medicine, Aurora, CO, USA... | 2021 | Prostaglandin analog effects on cerebrospinal fluid reabsorption via nasal mucosa | 10.1101/2021.03.02.433537 | [
"Pedler Michelle G.",
"Petrash J. Mark",
"Subramanian Prem S."
] | creative-commons |
Genetic engineering of Acidithiobacillus ferridurans with
CRISPR-Cas9/dCas9 systems
Jinjin Chena,*, Yilan Liua,*, Radhakrishnan Mahadevana,b,✉
a. Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, Canada
b. Institute of Biomedical Engineering, University of Toronto, Toront... | 2022 | Genetic engineering of with CRISPR-Cas9/dCas9 systems | 10.1101/2022.03.14.484339 | [
"Chen Jinjin",
"Liu Yilan",
"Mahadevan Radhakrishnan"
] | null |
1
Spinal cord precursors utilize neural crest cell mechanisms to generate hybrid
1
peripheral myelinating glia
2
3
Authors: Laura Fontenas and Sarah Kucenas1
4
5
Affiliation: Department of Biology, University of Virginia, Charlottesville, VA 22904,
6
USA
7
1Corresponding author: sk4ub@virginia.edu
8... | 2020 | Spinal cord precursors utilize neural crest cell mechanisms to generate hybrid peripheral myelinating glia | 10.1101/2020.10.22.351171 | [
"Fontenas Laura",
"Kucenas Sarah"
] | null |
1
Structural basis for DNA targeting by the Tn7 transposon
Yao Shen1,2, Josue Gomez-Blanco1,2, Michael T. Petassi3, Joseph E. Peters3, Joaquin Ortega2,4,
Alba Guarné1,2,5,*
1Department of Biochemistry, McGill University, Montreal (QC), Canada.
2Centre de Recherche and Biologie Structurale, McGill University,... | 2021 | Structural basis for DNA targeting by the Tn7 transposon | 10.1101/2021.05.24.445525 | [
"Shen Yao",
"Gomez-Blanco Josue",
"Petassi Michael T.",
"Peters Joseph E.",
"Ortega Joaquin",
"Guarné Alba"
] | null |
POGZ controls embryonic stem cell self-renewal and pluripotency by
association with esBAF and HP1
Xiaoyun Sun1#
Linxi Cheng1,2#
Yuhua Sun1,2,3*
1, Institute of Hydrobiology, Chinese Academy of Sciences
2, University of Chinese Academy of Sciences
3, innovation of seed
#: these authors contribute equally;
*: correspondi... | 2021 | POGZ controls embryonic stem cell self-renewal and pluripotency by association with esBAF and HP1 | 10.1101/2021.02.07.430173 | [
"Sun Xiaoyun",
"Cheng Linxi",
"Sun Yuhua"
] | null |
Customized genomes for human and mouse ribosomal DNA mapping
Subin S. George 1 , Maxim Pimkin 2 , Vikram R. Paralkar 3,4,5
1. Institute for Biomedical Informatics, University of Pennsylvania Perelman School of Medicine,
Philadelphia, PA 19104, USA
2. Cancer and Blood Disorders Center, Dan... | 2022 | Customized genomes for human and mouse ribosomal DNA mapping | 10.1101/2022.11.10.514243 | [
"George Subin S.",
"Pimkin Maxim",
"Paralkar Vikram R."
] | creative-commons |
Donker et al., 2021 BioRxiv
1
A mechanical G2 checkpoint controls epithelial cell
division through E-cadherin-mediated regulation of
Wee1-Cdk1
Lisa Donker¹, Marjolein J. Vliem¹, Helena Canever², Manuel Gómez-González³, Miquel Bosch-Padrós³,
Willem-Jan Pannekoek¹, Xavier Trepat³,⁴,⁵,⁶, Nicolas Borghi², Martijn Gloe... | 2021 | A mechanical G2 checkpoint controls epithelial cell division through E-cadherin-mediated regulation of Wee1-Cdk1 | 10.1101/2021.11.29.470352 | [
"Donker Lisa",
"Vliem Marjolein J.",
"Canever Helena",
"Gómez-González Manuel",
"Bosch-Padrós Miquel",
"Pannekoek Willem-Jan",
"Trepat Xavier",
"Borghi Nicolas",
"Gloerich Martijn"
] | null |
Davis and Grossman
1
1
Specificity and selective advantage of an exclusion system in the
2
integrative and conjugative element ICEBs1 of Bacillus subtilis
3
4
Kathleen P. Davis! and Alan D. Grossman*
5
Department of Biology
6
Massachusetts Institute of Technology
7
Cambridge, MA 02139
8
9
Runn... | 2021 | Specificity and selective advantage of an exclusion system in the integrative and conjugative element ICE of | 10.1101/2021.01.25.428195 | [
"Davis Kathleen P.",
"Grossman Alan D."
] | creative-commons |
1
Optimized production and fluorescent labelling of SARS-CoV-2 Virus-Like-
1
Particles to study virus assembly and entry
2
3
Manon Gourdelier1, Jitendriya Swain1, Coline Arone1, Anita Mouttou1, David Bracquemond1,
4
Peggy Merida1, Saveez Saffarian2, Sébastien Lyonnais 3, Cyril Favard1 and Delphine
5
Muriaux1... | 2022 | Optimized production and fluorescent labelling of SARS-CoV-2 Virus-Like-Particles to study virus assembly and entry | 10.1101/2022.03.23.485575 | [
"Gourdelier Manon",
"Swain Jitendriya",
"Arone Coline",
"Mouttou Anita",
"Bracquemond David",
"Merida Peggy",
"Saffarian Saveez",
"Lyonnais Sébastien",
"Favard Cyril",
"Muriaux Delphine"
] | null |
1
Functional Microswitches of Mammalian G Protein-Coupled
Bitter-Taste Receptors
Jérémie Topin‡,1,*, Cédric Bouysset‡,1, Yiseul Kim2, MeeRa Rhyu2, Sébastien Fiorucci1,*, Jérôme
Golebiowski1,3
[‡]
Co-first authors
[1]
Dr. J. Topin, C. Bouysset, Dr. S. Fiorucci, Prof. J. Golebiowski
Institut de Chimie de N... | 2020 | Functional Microswitches of Mammalian G Protein-Coupled Bitter-Taste Receptors | 10.1101/2020.10.23.348706 | [
"Topin Jérémie",
"Bouysset Cédric",
"Kim Yiseul",
"Rhyu MeeRa",
"Fiorucci Sébastien",
"Golebiowski Jérôme"
] | creative-commons |
Risk assessment of Ebola virus disease spreading
in Uganda using a multilayer temporal network
Mahbubul H Riad1,*, Musa Sekamatte2, Felix Ocom3, Issa Makumbi4, and Caterina M
Scoglio1
1Department of Electrical Engineering, Kansas State University, 1701D Platt St. Manhattan, KS 66506, USA
2Zoonotic Disease Coordination ... | 2019 | Risk assessment of Ebola virus disease spreading in Uganda using a multilayer temporal network | 10.1101/645598 | [
"Riad Mahbubul H",
"Sekamatte Musa",
"Ocom Felix",
"Makumbi Issa",
"Scoglio Caterina M"
] | creative-commons |
1
A simple thermodynamic description of phase separation of Nup98 FG
domains
Sheung Chun Ng1 and Dirk Görlich1*
1Department of Cellular Logistics, Max Planck Institute for Multidisciplinary Sciences,
Göttingen, Germany
* To whom correspondence should be addressed. E-mail: goerlich@mpinat.mpg.de... | 2022 | A simple thermodynamic description of phase separation of Nup98 FG domains | 10.1101/2022.07.26.501556 | [
"Ng Sheung Chun",
"Görlich Dirk"
] | creative-commons |
1
RAD51AP1 compensates for the loss of RAD54 in homology-directed
DNA repair
Platon Selemenakis1,2, Neelam Sharma1, Youngho Kwon3, Mollie Uhrig1,
Patrick Sung3 and Claudia Wiese1*
1 Environmental and Radiological Health Sciences, Colorado State University, Fort
Collins, Colorado, 80523, USA
2 Cell and... | 2021 | RAD51AP1 compensates for the loss of RAD54 in homology-directed DNA repair | 10.1101/2021.07.15.452469 | [
"Selemenakis Platon",
"Sharma Neelam",
"Kwon Youngho",
"Uhrig Mollie",
"Sung Patrick",
"Wiese Claudia"
] | creative-commons |
The Role of Orexin-1 Receptor Signaling in Demand for the Opioid Fentanyl
Jennifer E. Fragale PhD1, Caroline B. Pantazis BS1, Morgan H. James PhD1,2 and Gary Aston-
Jones PhD1
1. Brain Health Institute, Rutgers University and Rutgers Biomedical and Health Sciences, Piscataway,
New Jersey.
2. Florey Institute o... | 2019 | The Role of Orexin-1 Receptor Signaling in Demand for the Opioid Fentanyl | 10.1101/533059 | [
"Fragale Jennifer E.",
"Pantazis Caroline B.",
"James Morgan H.",
"Aston-Jones Gary"
] | null |
Antibiotic-induced dysbiosis does not potentiate the effect of lipopolysaccharide insult in
male Wistar rats
Hana Tejkalová 1, Lea Jakob1,2*, Simona Kvasnová3, Jan Klaschka4, Hana Sechovcová3,
5, Jakub Mrázek3, Tomáš Páleníček1, 2 and Kateřina Olša Fliegerová3
1 National Institute of Mental Health; Klecany, Czech... | 2022 | Antibiotic-induced dysbiosis does not potentiate the effect of lipopolysaccharide insult in male Wistar rats | 10.1101/2022.12.29.522253 | [
"Tejkalová Hana",
"Jakob Lea",
"Kvasnová Simona",
"Klaschka Jan",
"Sechovcová Hana",
"Mrázek Jakub",
"Páleníček Tomáš",
"Fliegerová Kateřina Olša"
] | creative-commons |
1
REPLICATE SUB-DAILY MINIRHIZOTRON
1
SAMPLING, DATA AND INTERPRETATION FOR
2
ROOT DYNAMICS STUDIES
3
Richard Nair1* / Martin Strube2 / Martin Hertel2 / Olaf Kolle2 / Victor Rolo3 / Mirco
4
Migliavacca1,4
5
1 Department for Biogeochemical Integration, Max-Planck-Institute for Biogeochemistry,
6
07745 J... | 2022 | Replicate Sub-Daily Minirhizotron Sampling, Data and Interpretation for Root Dynamics Studies | 10.1101/2022.01.06.475082 | [
"Nair Richard",
"Strube Martin",
"Hertel Martin",
"Kolle Olaf",
"Rolo Victor",
"Migliavacca Mirco"
] | creative-commons |
Title: Ultrasensitive Molecular Imaging of Mucosal Inflammation Using
Leucocyte-Mimicking Particles Targeted to MAdCAM-1.
Authors: Antoine P. Fournier1, Sara Martinez de Lizarrondo1, Adrien Rateau2, Axel Gerard-
Brisou2, Maximilian J. Waldner3, Markus F. Neurath3, Denis Vivien1,4, Fabian Docagne1,
Maxime Gaubert... | 2019 | Ultrasensitive Molecular Imaging of Mucosal Inflammation Using Leucocyte-Mimicking Particles Targeted to MAdCAM-1 | 10.1101/771659 | [
"Fournier Antoine P.",
"de Lizarrondo Sara Martinez",
"Rateau Adrien",
"Gerard-Brisou Axel",
"Waldner Maximilian J.",
"Neurath Markus F.",
"Vivien Denis",
"Docagne Fabian",
"Gauberti Maxime"
] | creative-commons |
1
Optimizing genomic prediction of host resistance to koi herpesvirus disease
1
in carp
2
Christos Palaiokostas1,2, Tomas Vesely4, Martin Kocour3, Martin Prchal3, Dagmar Pokorova4, Veronika
3
Piackova3, Lubomir Pojezdal4, Ross D. Houston1*
4
1 The Roslin Institute, Royal (Dick) School of Veterinary Studi... | 2019 | Optimizing genomic prediction of host resistance to koi herpesvirus disease in carp | 10.1101/609784 | [
"Palaiokostas Christos",
"Vesely Tomas",
"Kocour Martin",
"Prchal Martin",
"Pokorova Dagmar",
"Piackova Veronika",
"Pojezdal Lubomir",
"Houston Ross D."
] | creative-commons |
1
2
Variation in Leishmania chemokine suppression driven by diversification of
3
the GP63 virulence factor
4
5
6
7
8
Authors: Alejandro L. Antonia1, Amelia T. Martin1, Liuyang Wang1, Dennis C. Ko1,2,3
9
10
11
Affiliations
12
1Department of Molecular Genetics and Microbiology, School of M... | 2021 | Variation in chemokine suppression driven by diversification of the GP63 virulence factor | 10.1101/2021.02.01.429140 | [
"Antonia Alejandro L.",
"Martin Amelia T.",
"Wang Liuyang",
"Ko Dennis C."
] | creative-commons |
Robust hierarchically organized whole-brain patterns of
dysconnectivity in schizophrenia spectrum disorders observed after
Personalized Intrinsic Network Topography.
Erin W Dickie1,2, Saba Shahab3, Colin Hawco1,2, Dayton Miranda1, Gabrielle Herman1, Miklos
Argyelan4,5,6, Jie Lisa Ji7, Jerrold Jeyachandra1, Alan Anticev... | 2022 | Robust hierarchically organized whole-brain patterns of dysconnectivity in schizophrenia spectrum disorders observed after Personalized Intrinsic Network Topography | 10.1101/2022.12.13.520333 | [
"Dickie Erin W",
"Shahab Saba",
"Hawco Colin",
"Miranda Dayton",
"Herman Gabrielle",
"Argyelan Miklos",
"Ji Jie Lisa",
"Jeyachandra Jerrold",
"Anticevic Alan",
"Malhotra Anil K.",
"Voineskos Aristotle N"
] | creative-commons |
Evolution of bone cortical compactness in slow arboreal mammals
1
2
Alfieri F.1,2, Nyakatura J.A.1, Amson E.2
3
1. Institut für Biologie, Humboldt Universität zu Berlin, Berlin, Germany.
4
5
2. Museum für Naturkunde, Leibniz-Institut für Evolutions- und Biodiversitätsforschung, Berlin,
6
Germany.
7
8... | 2020 | Evolution of bone cortical compactness in slow arboreal mammals | 10.1101/2020.09.02.279836 | [
"Alfieri F.",
"Nyakatura J.A.",
"Amson E."
] | creative-commons |
1
TITLE PAGE:
Long-term Behavioural Rewriting of Maladaptive Drinking Memories via Reconsolidation-
Update Mechanisms.
Authors: Gale, Grace., 1 Hennessy, Vanessa E., 1 Walsh, Katie., 1 Kamboj, Sunjeev K. 1 &
Das, Ravi. K.1*
*Corresponding author. All correspondence to Dr. Ravi Das, Clinical, Educational an... | 2020 | Long-term Behavioural Rewriting of Maladaptive Drinking Memories via Reconsolidation-Update Mechanisms | 10.1101/2020.02.06.937698 | [
"Gale Grace.",
"Hennessy Vanessa E.",
"Walsh Katie.",
"Kamboj Sunjeev K.",
"Das Ravi. K."
] | null |
1
Glycine receptor α3K governs mobility and conductance of
1
L/K splice variant heteropentamers
2
3
Running title: Glycine receptor α3L/K heteropentamerization
4
5
Veerle Lemmens1,2,*, Bart Thevelein1,*, Svenja Kankowski3,4, Hideaki Mizuno5,
6
Jochen C. Meier4, Susana Rocha2, Bert Brône6, Jelle Hen... | 2021 | Glycine receptor α3K governs mobility and conductance of L/K splice variant heteropentamers | 10.1101/2021.02.18.431627 | [
"Lemmens Veerle",
"Thevelein Bart",
"Kankowski Svenja",
"Mizuno Hideaki",
"Meier Jochen C.",
"Rocha Susana",
"Brône Bert",
"Hendrix Jelle"
] | creative-commons |
Ensete glaucum chromosome-scale genome assembly. Wang et al. Page 1 of 57.
A chromosome-level reference genome of Ensete
1
glaucum gives insight into diversity, chromosomal
2
and repetitive sequence evolution in the Musaceae
3
Ziwei Wang1,2,3, Mathieu Rouard4,5, Manosh Kumar Biswas6, Gaetan Droc5,7,8, Dongli ... | 2021 | A chromosome-level reference genome of gives insight into diversity, chromosomal and repetitive sequence evolution in the Musaceae | 10.1101/2021.11.23.469474 | [
"Wang Ziwei",
"Rouard Mathieu",
"Biswas Manosh Kumar",
"Droc Gaetan",
"Cui Dongli",
"Roux Nicolas",
"Baurens Franc-Christophe",
"Ge Xue-Jun",
"Schwarzacher Trude",
"Heslop-Harrison Pat (J.S.)",
"Liu Qing"
] | null |
1
Dynamics of bacterial cell division: Z ring condensation is
essential for cytokinesis
Georgia R. Squyres1†, Matthew J. Holmes1†, Sarah R. Barger2,3,8, Betheney R. Pennycook2,4,5,
Joel Ryan2,6, Victoria T. Yan2,7, Ethan C. Garner1*
1Molecular and Cellular Biology, Harvard University, Cambridge, Massachusett... | 2020 | Dynamics of bacterial cell division: Z ring condensation is essential for cytokinesis | 10.1101/2020.06.30.180737 | [
"Squyres Georgia R.",
"Holmes Matthew J.",
"Barger Sarah R.",
"Pennycook Betheney R.",
"Ryan Joel",
"Yan Victoria T.",
"Garner Ethan C."
] | creative-commons |
1
The Histoplasma capsulatum DDR48 Gene Is Required For Survival Within
1
Macrophages, Response To Oxidative Stress, And Resistance to Antifungal
2
Drugs
3
4
Logan T. Blancett,a#* Kauri A. Runge,a* Gabriella M. Reyes,a Lauren A. Kennedy,a*
5
Sydney C. Jackson,a Sarah E. Scheuermann,ab* Mallory B. Harmon,ac... | 2020 | The Gene Is Required For Survival Within Macrophages, Response To Oxidative Stress, And Resistance to Antifungal Drugs | 10.1101/2020.10.25.354308 | [
"Blancett Logan T.",
"Runge Kauri A.",
"Reyes Gabriella M.",
"Kennedy Lauren A.",
"Jackson Sydney C.",
"Scheuermann Sarah E.",
"Harmon Mallory B.",
"Williams Jamease C.",
"Shearer Glenmore"
] | creative-commons |
1
Extracellular Thimet Oligopeptidase is Released with Extracellular Vesicles from Human
Prostate Cancer Cells
Yu Liu1,2; Lisa Bruce1,3; Adele J. Wolfson1
Author Affiliations:
1. Department of Chemistry, Wellesley College, Wellesley, MA (Liu, Bruce, Wolfson)
2. Saint Louis University School of Medicine, Sai... | 2020 | Extracellular Thimet Oligopeptidase is Released with Extracellular Vesicles from Human Prostate Cancer Cells | 10.1101/2020.05.10.087304 | [
"Liu Yu",
"Bruce Lisa",
"Wolfson Adele J."
] | null |
How collectively integrated are ecological communities?
Yuval R. Zelnik∗1, Nuria Galiana∗2, Matthieu Barbier3, Michel Loreau4, Eric
Galbraith5,6, and Jean-Fran¸cois Arnoldi†4
1Department of Crop Production Ecology, Swedish University of Agricultural
Sciences (SLU), Uppsala, Sweden
2Department of Biogeography and Global... | 2022 | How collectively integrated are ecological communities? | 10.1101/2022.12.29.522189 | [
"Zelnik Yuval R.",
"Galiana Nuria",
"Barbier Matthieu",
"Loreau Michel",
"Galbraith Eric",
"Arnoldi Jean-François"
] | creative-commons |
A geometric and structural approach to the analysis and design of
biological circuit dynamics: a theory tailored for synthetic biology
John P. Marken1*, Fangzhou Xiao1*, and Richard M. Murray1,2
1Department of Bioengineering, California Institute of Technology
2Department of Control and Dynamical Systems, California In... | 2020 | A geometric and structural approach to the analysis and design of biological circuit dynamics: a theory tailored for synthetic biology | 10.1101/2020.02.18.953620 | [
"Marken John P.",
"Xiao Fangzhou",
"Murray Richard M."
] | creative-commons |
1
Taxon cycles in Neotropical mangroves
Valentí Rull
Botanic Institute of Barcelona, Consejo Superior de Investigaciones Científicas (CSIC), Pg. del
Migdia s/n, 08038 Barcelona, Spain. Email vrull@csic.es
Abstract
The concept of taxon cycle involves successive range expansions and contractions over time
... | 2022 | Taxon cycles in Neotropical mangroves | 10.1101/2022.09.25.509361 | null | null |
1
Starvation sensing by mycobacterial RelA/SpoT homologue through constitutive
2
surveillance of translation
3
4
Yunlong Li1#, Soneya Majumdar2#, Ryan Treen1,3#, Manjuli R. Sharma2, Jamie Corro1,3,
5
Howard B. Gamper4, Swati R. Manjari2, Jerome Prusa5, Nilesh K. Banavali2, Christina L.
6
Stallings5, Ya-M... | 2022 | Starvation sensing by mycobacterial RelA/SpoT homologue through constitutive surveillance of translation | 10.1101/2022.12.29.522164 | [
"Li Yunlong",
"Majumdar Soneya",
"Treen Ryan",
"Sharma Manjuli R.",
"Corro Jamie",
"Gamper Howard B.",
"Manjari Swati R.",
"Prusa Jerome",
"Banavali Nilesh K.",
"Stallings Christina L.",
"Hou Ya-Ming",
"Agrawal Rajendra K.",
"Ojha Anil K."
] | creative-commons |
Ylla et al. Page 1 of 39
Insights into the genomic evolution of insects from cricket
1
genomes
2
Guillem Ylla1*, Taro Nakamura1,2, Takehiko Itoh3, Rei Kajitani3, Atsushi Toyoda4,5, Sayuri
3
Tomonari6, Tetsuya Bando7, Yoshiyasu Ishimaru6, Takahito Watanabe6, Masao Fuketa8, Yuji
4
Matsuoka6,9, Austen A. Barnett1... | 2021 | Insights into the genomic evolution of insects from cricket genomes | 10.1101/2020.07.07.191841 | [
"Ylla Guillem",
"Nakamura Taro",
"Itoh Takehiko",
"Kajitani Rei",
"Toyoda Atsushi",
"Tomonari Sayuri",
"Bando Tetsuya",
"Ishimaru Yoshiyasu",
"Watanabe Takahito",
"Fuketa Masao",
"Matsuoka Yuji",
"Barnett Austen A.",
"Noji Sumihare",
"Mito Taro",
"Extavour Cassandra G."
] | creative-commons |
Molecular crowding in single eukaryotic cells: using cell environment biosensing
and single-molecule optical microscopy to probe dependence on extracellular
ionic strength, local glucose conditions, and sensor copy number
Jack W Shepherd1,a,b, Sarah Lecinski1,a, Jasmine Wraggc, Sviatlana Shashkovaa,d, Chris MacD... | 2020 | Molecular crowding in single eukaryotic cells: using cell environment biosensing and single-molecule optical microscopy to probe dependence on extracellular ionic strength, local glucose conditions, and sensor copy number | 10.1101/2020.08.14.251363 | [
"Shepherd Jack W",
"Lecinski Sarah",
"Wragg Jasmine",
"Shashkova Sviatlana",
"MacDonald Chris",
"Leake Mark C"
] | null |
1
No impact of biocontrol predator on development time or size of
1
surviving Aedes albopictus under optimal nutritional availability
2
Marie C. Russell1* and Lauren J. Cator1
3
4
1Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, UK
5
*Correspondence: marie.clare.russell@g... | 2021 | No impact of biocontrol predator on development time or size of surviving under optimal nutritional availability | 10.1101/2021.09.16.460697 | [
"Russell Marie C.",
"Cator Lauren J."
] | creative-commons |
Determinants of Real-Time fMRI Neurofeedback Performance and
Improvement – a Machine Learning Mega-Analysis
Amelie Haugg1,2, Fabian M. Renz2, Andrew A. Nicholson2, Cindy Lor2, Sebastian J.
Götzendorfer2, Ronald Sladky2, Stavros Skouras3, Amalia McDonald4, Cameron Craddock5,
Lydia Hellrung6, Matthias Kirschner,1... | 2020 | Determinants of Real-Time fMRI Neurofeedback Performance and Improvement – a Machine Learning Mega-Analysis | 10.1101/2020.10.21.349118 | [
"Haugg Amelie",
"Renz Fabian M.",
"Nicholson Andrew A.",
"Lor Cindy",
"Götzendorfer Sebastian J.",
"Sladky Ronald",
"Skouras Stavros",
"McDonald Amalia",
"Craddock Cameron",
"Hellrung Lydia",
"Kirschner Matthias",
"Herdener Marcus",
"Koush Yury",
"Papoutsi Marina",
"Keynan Jackob",
"He... | creative-commons |
Network mechanisms underlying representational drift in area CA1 of
1
hippocampus
2
Federico Devalle and Alex Roxin
3
Centre de Recerca Matemàtica, Campus de Bellaterra, Edifici C, 08193 Bellaterra (Barcelona), Spain
4
Chronic imaging experiments in mice have revealed that the hippocampal code drifts over long
5
time s... | 2022 | Network mechanisms underlying representational drift in area CA1 of hippocampus | 10.1101/2022.11.10.515946 | [
"Devalle Federico",
"Roxin Alex"
] | creative-commons |
Page | 1
A new parallel high-pressure packing system enables rapid
multiplexed production of capillary columns
Johannes B. Müller-Reif‡,‖, Fynn M. Hansen‡, Lisa Schweizer‡, Peter V. Treit‡, Philipp E. Geyer‡,‖,¶,
Matthias Mann‡,¶,*
Affiliations
‡Department of Proteomics and Signal Transduction, Max Planck I... | 2021 | A new parallel high-pressure packing system enables rapid multiplexed production of capillary columns | 10.1101/2021.02.26.433033 | [
"Müller-Reif Johannes B.",
"Hansen Fynn M.",
"Schweizer Lisa",
"Treit Peter V.",
"Geyer Philipp E.",
"Mann Matthias"
] | null |
Smartphone deprivation alters cortical sensorimotor processing of the hand
Arko Ghosh
a.ghosh@fsw.leidenuniv.nl
Leiden University
Cognitive Psychology Unit
Institute of Psychology
Leiden, The Netherlands
Conflict of interest
Arko Ghosh is a co-founder of QuantActions Ltd, Lausanne, Switzerland. Thi... | 2021 | Smartphone deprivation alters cortical sensorimotor processing of the hand | 10.1101/2021.03.04.433898 | null | null |
Briefings in Bioinformatics, 2022, pp. 1–11
doi: DOI HERE
Advance Access Publication Date: Day Month Year
Paper
PAPER
Interpretable and Generalizable Attention-Based
Model for Predicting Drug-Target Interaction Using
3D Structure of Protein Binding Sites: SARS-CoV-2
Case Study and in-Lab Validation
Mehdi Yazdani-Jahrom... | 2022 | Interpretable and Generalizable Attention-Based Model for Predicting Drug-Target Interaction Using 3D Structure of Protein Binding Sites: SARS-CoV-2 Case Study and in-Lab Validation | 10.1101/2021.12.07.471693 | [
"Yazdani-Jahromi Mehdi",
"Yousefi Niloofar",
"Tayebi Aida",
"Garibay Ozlem Ozmen",
"Seal Sudipta",
"Kolanthai Elayaraja",
"Neal Craig J."
] | creative-commons |
1
Divergent resistance mechanisms to immunotherapy explains
response in different skin cancers
Emmanuel Dollinger1,2,3,4*, Daniel Bergman1*, Peijie Zhou1, Scott Atwood2,3,4,5†, Qing
Nie1,2,3,4†
1 Department of Mathematics, 2 Department of Developmental and Cell Biology, 3 NSF-Simons Center
for Multiscale Cell... | 2020 | Divergent resistance mechanisms to immunotherapy explains response in different skin cancers | 10.1101/2020.09.15.298182 | [
"Dollinger Emmanuel",
"Bergman Daniel",
"Zhou Peijie",
"Atwood Scott",
"Nie Qing"
] | null |
1
Plant-derived coumarins shape the composition of an
Arabidopsis synthetic root microbiome
Mathias J.E.E.E. Voges1,2, Yang Bai3,a,b,c, Paul Schulze-Lefert3,4, and Elizabeth S. Sattely1
1Department of Chemical Engineering, Stanford University, Stanford, CA 94305, USA
2Department of Bioengineering, Stanford Uni... | 2018 | Plant-derived coumarins shape the composition of an synthetic root microbiome | 10.1101/485581 | [
"Voges Mathias J.E.E.E.",
"Bai Yang",
"Schulze-Lefert Paul",
"Sattely Elizabeth S."
] | null |
1
CoSTA: Unsupervised Convolutional Neural Network
1
Learning for Spatial Transcriptomics Analysis
2
Yang Xu1 and Rachel Patton McCord2*
3
1 UT-ORNL Graduate School of Genome Science and Technology, University of Tennessee,
4
Knoxville, TN
5
2 Biochemistry & Cellular and Molecular Biology Department, Unive... | 2021 | CoSTA: Unsupervised Convolutional Neural Network Learning for Spatial Transcriptomics Analysis | 10.1101/2021.01.12.426400 | [
"Xu Yang",
"McCord Rachel Patton"
] | null |
1
A YoeB toxin from A. tumefaciens has metal-dependent DNA
1
cleaving activity
2
Julia McGillick1, Jessica R. Ames1, Tamiko Murphy, Eswar Reddem2, and Christina R. Bourne3
3
Department of Chemistry and Biochemistry, University of Oklahoma, Norman, OK, 73019, USA.
4
1: These authors contributed equally to thi... | 2019 | A YoeB toxin from has metal-dependent DNA cleaving activity | 10.1101/795211 | [
"McGillick Julia",
"Ames Jessica R.",
"Murphy Tamiko",
"Reddem Eswar",
"Bourne Christina R."
] | creative-commons |
Title: NMR as a readout to monitor and restore the integrity of complex
chemoenzymatic reactions.
Authors: Kenneth A. Marincina, Yousang Hwangb, Everett S. Kengmanac, David J.
Meyersb, Dominique P. Frueha
a Department of Biophysics and Biophysical Chemistry, Johns Hopkins School of
Medicine, Baltimore, MD 2120... | 2022 | NMR as a readout to monitor and restore the integrity of complex chemoenzymatic reactions | 10.1101/2022.05.14.491371 | [
"Marincin Kenneth A.",
"Hwang Yousang",
"Kengmana Everett S.",
"Meyers David J.",
"Frueh Dominique P."
] | creative-commons |
1
Harmonizing labeling and analytical strategies to obtain protein
1
turnover rates in intact adult animals.
2
3
4
Dean E Hammond1*†, Deborah M Simpson1, Catarina Franco1, Marina Wright Muelas2, John Waters3,
5
R W Ludwig4, Mark C Prescott1, Jane L Hurst3, Robert J Beynon1,†, Edward Lau4*†
6
7
8
... | 2021 | Harmonizing labeling and analytical strategies to obtain protein turnover rates in intact adult animals | 10.1101/2021.12.13.472439 | [
"Hammond Dean E",
"Simpson Deborah M",
"Franco Catarina",
"Muelas Marina Wright",
"Waters John",
"Ludwig R W",
"Prescott Mark C",
"Hurst Jane L",
"Beynon Robert J",
"Lau Edward"
] | creative-commons |
Page 1 of 57
Modification of forests by people means only 40% of remaining forests have
1
high ecosystem integrity
2
3
Authors: Grantham, H.S.1*, Duncan, A.1, Evans, T. D.1, Jones, K.1, Beyer, H.2, Schuster, R.3,
4
Walston, J.1, Ray, J.1, Robinson, J.1, Callow, M.1, Clements, T.1, Costa, H.M.1, De... | 2020 | Modification of forests by people means only 40% of remaining forests have high ecosystem integrity | 10.1101/2020.03.05.978858 | [
"Grantham H.S.",
"Duncan A.",
"Evans T. D.",
"Jones K.",
"Beyer H.",
"Schuster R.",
"Walston J.",
"Ray J.",
"Robinson J.",
"Callow M.",
"Clements T.",
"Costa H.M.",
"DeGemmis A.",
"Elsen P.R.",
"Ervin J.",
"Franco P.",
"Goldman E.",
"Goetz S.",
"Hansen A.",
"Hofsvang E.",
"Ja... | creative-commons |
1
Kinetics of osmotic stress regulates a cell fate switch of cell survival
1
2
Alexander Thiemicke1, and Gregor Neuert1-4,*
3
4
1Program in Chemical and Physical Biology, Vanderbilt University, Nashville, TN, USA
5
2Department of Molecular Physiology and Biophysics, School of Medicine, Vanderbilt
6
Uni... | 2020 | Kinetics of osmotic stress regulates a cell fate switch of cell survival | 10.1101/2020.07.10.197871 | [
"Thiemicke Alexander",
"Neuert Gregor"
] | creative-commons |
1
Identifying Optimal Neuroinflammation Treatment Using
Nanoligomer™ Discovery Engine
Sadhana Sharma,1 Curtis Borski,2,3 Jessica Hanson 2,3, Micklaus A. Garcia2, Christopher D.
Link,2 Charles Hoeffer,2,3 Anushree Chatterjee,1 Prashant Nagpal1,*
1 Sachi Bioworks, 685 S Arthur Avenue, Colorado Technology Cente... | 2022 | Identifying Optimal Neuroinflammation Treatment Using Nanoligomer™ Discovery Engine | 10.1101/2022.08.23.505002 | [
"Sharma Sadhana",
"Borski Curtis",
"Hanson Jessica",
"Garcia Micklaus A.",
"Link Christopher D.",
"Hoeffer Charles",
"Chatterjee Anushree",
"Nagpal Prashant"
] | null |
Untangling the cell immune response dynamic for severe and
1
critical cases of SARS-CoV-2 infection
2
Rodolfo Blanco-Rodrígueza, Xin Dub and Esteban Hernández-Vargasa,b,c
3
a Instituto de Matemáticas, Universidad Nacional Autónoma de México, Boulevard Juriquilla 3001, Querétaro, Qro., 76230, México
4
bSchool of Mechatr... | 2021 | Untangling the cell immune response dynamic for severe and critical cases of SARS-CoV-2 infection | 10.1101/2021.03.23.436686 | [
"Blanco-Rodríguez Rodolfo",
"Du Xin",
"Hernández-Vargas Esteban"
] | creative-commons |
1
1
2
Full Title: Seizing diminishing habitat conservation and restoration opportunities in the Tampa
3
Bay, FL watershed: An urban estuary in recovery
4
5
Short Title: Tampa Bay watershed habitat restoration planning
6
7
Gary E Raulerson1*, Douglas E Robison2, Marcus W Beck1, Maya C Burke1, Thomas F Ries2,
8
Justin ... | 2020 | Seizing diminishing habitat conservation and restoration opportunities in the Tampa Bay, FL watershed: An urban estuary in recovery | 10.1101/2020.11.16.384404 | [
"Raulerson Gary E",
"Robison Douglas E",
"Beck Marcus W",
"Burke Maya C",
"Ries Thomas F",
"Saarinen Justin A",
"Sciarrino Christine M",
"Sherwood Edward T",
"Tomasko David A"
] | creative-commons |
1
Long non-coding RNA GAS5 acts as proliferation “brakes” in CD133+ cells responsible
for tumor recurrence
Nikita S Sharma$, Prisca Gnamlin$, Brittany Durden, Vineet K Gupta, Kousik Kesh, Vanessa T
Garrido, Roey Hadad, Vikas Dudeja, Ashok Saluja, Sulagna Banerjee*
Department of Surgery, Miller school of Medic... | 2019 | Long non-coding RNA GAS5 acts as proliferation “brakes” in CD133+ cells responsible for tumor recurrence | 10.1101/670968 | [
"Sharma Nikita S",
"Gnamlin Prisca",
"Durden Brittany",
"Gupta Vineet K",
"Kesh Kousik",
"Garrido Vanessa T",
"Hadad Roey",
"Dudeja Vikas",
"Saluja Ashok",
"Banerjee Sulagna"
] | null |
1
Functional heterogeneity of lymphocytic patterns in primary melanoma dissected through single-cell
1
multiplexing.
2
Francesca Maria Bosisio* (1)(2), Asier Antoranz* (3)(4), Yannick van Herck (5), Maddalena Maria Bolognesi
3
(2), Lukas Marcelis (1), Clizia Chinello (2), Jasper Wouters (1), Fulvio Magni (2),... | 2019 | Functional heterogeneity of lymphocytic patterns in primary melanoma dissected through single-cell multiplexing | 10.1101/409011 | [
"Maria Bosisio Francesca",
"Antoranz Asier",
"van Herck Yannick",
"Maria Bolognesi Maddalena",
"Marcelis Lukas",
"Chinello Clizia",
"Wouters Jasper",
"Magni Fulvio",
"Alexopoulos Leonidas",
"Stas Marguerite",
"Boecxstaens Veerle",
"Bechter Oliver",
"Cattoretti Giorgio",
"van den Oord Joost... | null |
FiMO: Inferring the Temporal Order of Mutations on
Clonal Phylogeny under Finite-sites Models
Avesh Kumar Agrawal1, Hamim Zafar1,2,3,⇤
1Department of Computer Science & Engineering, IIT Kanpur, Kanpur, India
2Department of Biological Sciences & Bioengineering, IIT Kanpur, Kanpur, India
3Mehta Family Centre for Engineer... | 2022 | FiMO: Inferring the Temporal Order of Mutations on Clonal Phylogeny under Finite-sites Models | 10.1101/2022.01.23.477444 | [
"Agrawal Avesh Kumar",
"Zafar Hamim"
] | creative-commons |
1
Reaching around obstacles accounts for uncertainty in coordinate
1
transformations
2
Parisa Abedi Khoozani1,2, Dimitris Voudouris4,5, Gunnar Blohm1,2,3, Katja Fiehler4,5
3
1Centre for Neuroscience Studies, Queen’s University, Kingston, Ontario, Canada
4
2Canadian Action and Perception Network (CAPnet), To... | 2020 | Reaching around obstacles accounts for uncertainty in coordinate transformations | 10.1101/706317 | [
"Abedi Khoozani Parisa",
"Voudouris Dimitris",
"Blohm Gunnar",
"Fiehler Katja"
] | null |
Automatic Recognition of Auditory Brainstem Response
Characteristic Waveform based on BiLSTM
Cheng Chen1，&, Li Zhan2，&, Xiaoxin Pan1, Zhiliang Wang1, Xiaoyu Guo1, Handai Qin2, Fen Xiong2, Wei Shi2,
Min Shi2, Fei Ji2, Qiuju Wang2, Ning Yu2,*, Ruoxiu Xiao1,3,*
1School of Computer and Communication Engineering, Univ... | 2020 | Automatic Recognition of Auditory Brainstem Response Characteristic Waveform based on BiLSTM | 10.1101/2020.10.03.324665 | [
"Chen Cheng",
"Zhan Li",
"Pan Xiaoxin",
"Wang Zhiliang",
"Guo Xiaoyu",
"Qin Handai",
"Xiong Fen",
"Shi Wei",
"Shi Min",
"Ji Fei",
"Wang Qiuju",
"Yu Ning",
"Xiao Ruoxiu"
] | null |
A non-canonical feedforward pathway for computing odor identity
Honggoo Chae1♯, Arkarup Banerjee1,2,3♯ & Dinu F. Albeanu1,2*
1 Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
2 Cold Spring Harbor Laboratory School for Biological Sciences, Cold Spring Harbor, NY
3 current address - New York University Medi... | 2021 | A non-canonical feedforward pathway for computing odor identity | 10.1101/2020.09.28.317248 | [
"Chae Honggoo",
"Banerjee Arkarup",
"Albeanu Dinu F."
] | null |
1
Work Flows for Cellular Epidemiology, From Conception to Translation
Anton D. Nathanson1†, Lucy Ngo1†, Tomasz Garbowski2, Abhilash Srikantha3, Christian
Wojek3, Dirk Zeidler2, Melissa L. Knothe Tate1*
submission as Tools and Resources type article
1MechBio Team, Graduate School of Biomedical Engineering, Un... | 2019 | Work Flows for Cellular Epidemiology, From Conception to Translation | 10.1101/548412 | [
"Nathanson Anton D.",
"Ngo Lucy",
"Garbowski Tomasz",
"Srikantha Abhilash",
"Wojek Christian",
"Zeidler Dirk",
"Tate Melissa L. Knothe"
] | null |
1
Biallelic TANGO1 mutations cause a novel syndromal disease due to hampered
1
cellular collagen secretion
2
3
Caroline Lekszas1,†, Ombretta Foresti2,†, Ishier Raote2,†, Daniel Liedtke1, Eva-Maria König1,
4
Indrajit Nanda1, Barbara Vona1,3, Peter De Coster4, Rita Cauwels4, Vivek Malhotra2,‡,
5
Thomas Haaf... | 2019 | Biallelic mutations cause a novel syndromal disease due to hampered cellular collagen secretion | 10.1101/750349 | [
"Lekszas Caroline",
"Foresti Ombretta",
"Raote Ishier",
"Liedtke Daniel",
"König Eva-Maria",
"Nanda Indrajit",
"Vona Barbara",
"De Coster Peter",
"Cauwels Rita",
"Malhotra Vivek",
"Haaf Thomas"
] | creative-commons |
1
Improved Nanopore full-length cDNA sequencing by PCR-suppression
Anthony Bayega1*, Spyros Oikonomopoulos1*, Yu Chang Wang1, Jiannis Ragoussis1,2
*Co-first authors
1. McGill University Genome Centre, Department of Human Genetics, 740 Dr. Penfield Avenue, McGill
University, Montréal, Québec, Canada
2. Depar... | 2022 | Improved Nanopore full-length cDNA sequencing by PCR-suppression | 10.1101/2022.07.28.501892 | [
"Bayega Anthony",
"Oikonomopoulos Spyros",
"Wang Yu Chang",
"Ragoussis Jiannis"
] | creative-commons |
Page 1 of 29
Fast ontogenetic growth drives steep evolutionary scaling of metabolic rate
1
2
Tommy Norin
3
4
DTU Aqua: National Institute of Aquatic Resources, Technical University of Denmark,
5
Kemitorvet, Building 202, 2800 Kgs. Lyngby, Denmark (tnor@aqua.dtu.dk)
6
7
Abstract
8
Metabolic rate (M... | 2021 | Fast ontogenetic growth drives steep evolutionary scaling of metabolic rate | 10.1101/2021.03.29.437465 | null | creative-commons |
1
Phase dynamics of cerebral blood flow in subarachnoid
haemorrhage in response to sodium nitrite infusion
Martyn Ezra1, Payashi Garry1, Matthew J Rowland1, Georgios D Mitsis2, Kyle TS Pattinson1
1 Nuffield Division of Anaesthetics, Nuffield Department of Clinical Neurosciences,
University of Oxford, UK
2 D... | 2020 | Phase dynamics of cerebral blood flow in subarachnoid haemorrhage in response to sodium nitrite infusion | 10.1101/2020.06.15.152108 | [
"Ezra Martyn",
"Garry Payashi",
"Rowland Matthew J",
"Mitsis Georgios D",
"Pattinson Kyle TS"
] | null |
Title: Competitive dynamics underlie cognitive improvements during sleep
Authors: Pin-Chun Chen1,2, Hamid Niknazar1, William A. Alaynick3, Lauren N. Whitehurst4,
and Sara C. Mednick1*
Affiliations:
1Department of Cognitive Sciences, University of California, Irvine
2Department of Statistics, University of Cali... | 2021 | Competitive dynamics underlie cognitive improvements during sleep | 10.1101/2021.03.31.437952 | [
"Chen Pin-Chun",
"Niknazar Hamid",
"Alaynick William A.",
"Whitehurst Lauren N.",
"Mednick Sara C."
] | creative-commons |
1
Antibody:CD47 ratio regulates macrophage phagocytosis through competitive receptor
phosphorylation
Emily C. Suter1,2, Eva M. Schmid1, Erik Voets3, Brian Francica4, Daniel A. Fletcher1,2,5,6,*
1Department of Bioengineering, University of California Berkeley, Berkeley CA, USA
2UC Berkeley/UC San Francisco Gradua... | 2020 | Antibody:CD47 ratio regulates macrophage phagocytosis through competitive receptor phosphorylation | 10.1101/2020.07.31.231779 | [
"Suter Emily C.",
"Schmid Eva M.",
"Voets Erik",
"Francica Brian",
"Fletcher Daniel A."
] | creative-commons |
PEPSDI: Scalable and flexible inference framework
for stochastic dynamic single-cell models
Sebastian Persson1, Niek Welkenhuysen1, Sviatlana Shashkova2, Samuel Wiqvist3, Patrick
Reith1,4, Gregor W. Schmidt5, Umberto Picchini1*, Marija Cvijovic1*
1 Department of Mathematical Sciences, Chalmers University of Technology a... | 2021 | PEPSDI: Scalable and flexible inference framework for stochastic dynamic single-cell models | 10.1101/2021.07.01.450748 | [
"Persson Sebastian",
"Welkenhuysen Niek",
"Shashkova Sviatlana",
"Wiqvist Samuel",
"Reith Patrick",
"Schmidt Gregor W.",
"Picchini Umberto",
"Cvijovic Marija"
] | creative-commons |
The role of mental simulation in primate physical inference abilities
1 Rishi Rajalingham, 1 Aida Piccato, and 1,2 Mehrdad Jazayeri
1 McGovern Institute for Brain Research, 2 Department of Brain & Cognitive Sciences,
5 Massachusetts Institute of Technology, Cambridge, Mas... | 2021 | The role of mental simulation in primate physical inference abilities | 10.1101/2021.01.14.426741 | [
"Rajalingham Rishi",
"Piccato Aida",
"Jazayeri Mehrdad"
] | creative-commons |
1
1
2
Zika virus-based immunotherapy enhances long-term survival of rodents with brain tumors
3
through upregulation of memory T-cells
4
5
6
Andrew T. Crane1, ¶, *, Matthew R. Chrostek1, ¶, Venkatramana D. Krishna2, Maple Shiao1,
7
Nikolas G. Toman1, Clairice Pearce1, Sarah K. Tran1, Christopher J. Sipe1, #a, Winston... | 2020 | Zika virus-based immunotherapy enhances long-term survival of rodents with brain tumors through upregulation of memory T-cells | 10.1101/2020.04.24.059253 | [
"Crane Andrew T.",
"Chrostek Matthew R.",
"Krishna Venkatramana D.",
"Shiao Maple",
"Toman Nikolas G.",
"Pearce Clairice",
"Tran Sarah K.",
"Sipe Christopher J.",
"Guo Winston",
"Voth Joseph P.",
"Vaid Shivanshi",
"Xie Hui",
"Lu Wei-Cheng",
"Swanson Will",
"Grande Andrew W.",
"Schleiss... | creative-commons |
Asymmetric molecular architecture of the human 𝛾-tubulin ring complex
Authors: Michal Wieczorek*1, Linas Urnavicius*1,2, Shih-Chieh Ti1,4, Kelly R. Molloy3,
Brian T. Chait3, and Tarun M. Kapoor✝1.
1 Laboratory of Chemistry and Cell Biology, The Rockefeller University, 1230 York
Avenue, New York,... | 2019 | Asymmetric molecular architecture of the human -tubulin ring complex | 10.1101/820142 | [
"Wieczorek Michal",
"Urnavicius Linas",
"Ti Shih-Chieh",
"Molloy Kelly R.",
"Chait Brian T.",
"Kapoor Tarun M."
] | creative-commons |
1
Matrix Gla Protein acts as a driver of stemness and tumor initiation in ovarian
cancer
V. Nieddu1, V. Melocchi2, C. Battistini1, G. Franciosa3, M. Lupia1, C. Stellato1, G.
Bertalot4,5, J.V. Olsen3, N. Colombo6,7, F. Bianchi2, and U. Cavallaro1*
1Unit of Gynaecological Oncology Research, European Institute ... | 2022 | Matrix Gla Protein acts as a driver of stemness and tumor initiation in ovarian cancer | 10.1101/2022.12.06.519263 | [
"Nieddu V.",
"Melocchi V.",
"Battistini C.",
"Franciosa G.",
"Lupia M.",
"Stellato C.",
"Bertalot G.",
"Olsen J.V.",
"Colombo N.",
"Bianchi F.",
"Cavallaro U."
] | null |
Task-driven hierarchical deep neural network
models of the proprioceptive pathway
Kai J. Sandbrink1,†, Pranav Mamidanna2,3,†, Claudio Michaelis2,4,
Mackenzie Weygandt Mathis1,2,∗, Matthias Bethge2,4,∗, Alexander Mathis1,2,∗5
1The Rowland Institute at Harvard, Harvard University, Cambridge, MA USA
2Institute for Theoret... | 2020 | Task-driven hierarchical deep neural network models of the proprioceptive pathway | 10.1101/2020.05.06.081372 | [
"Sandbrink Kai J.",
"Mamidanna Pranav",
"Michaelis Claudio",
"Mathis Mackenzie Weygandt",
"Bethge Matthias",
"Mathis Alexander"
] | creative-commons |
1
TRAIP regulates DNA double-strand break-induced ATM activation
Tobias Gleich1, Manfredo Quadroni2, Gökhan Yigit3, Bernd Wollnik3, Marcel Huber1, Christine
Pich1, Daniel Hohl1*
1Department of Dermatology, CHUV, University Hospital Lausanne, Lausanne, 1011, Switzerland
2Protein Analysis Facility, University ... | 2021 | TRAIP regulates DNA double-strand break-induced ATM activation | 10.1101/2021.10.11.462297 | [
"Gleich Tobias",
"Quadroni Manfredo",
"Yigit Gökhan",
"Wollnik Bernd",
"Huber Marcel",
"Pich Christine",
"Hohl Daniel"
] | creative-commons |
An immune-related E2F gene expression signature provides
prognostic information in patients with hepatocellular
carcinoma
Lu Wang,1 Xiangdong Liu,1 and Zhongsheng Sun,2,3
1 Key Laboratory of Developmental Genes and Human Diseases, Institute of Life
Sciences, Southeast University, 2 Sipailou Road, Nanjing, Jian... | 2021 | An immune-related E2F gene expression signature provides prognostic information in patients with hepatocellular carcinoma | 10.1101/2021.06.26.450025 | [
"Wang Lu",
"Liu Xiangdong",
"Sun Zhongsheng"
] | null |
1
AIRE is induced in oral squamous cell carcinoma and promotes cancer gene expression.
Chi Thi Kim Nguyen1, Wanlada Sawangarun1, Masita Mandasari1, Kei-ichi Morita2,3, Kou Kayamori1,
Akira Yamaguchi1,4, Kei Sakamoto1*
1 Department of Oral Pathology, Graduate School of Medical and Dental Sciences, Tokyo Medical
and De... | 2019 | AIRE is induced in oral squamous cell carcinoma and promotes cancer gene expression | 10.1101/760959 | [
"Nguyen Chi Thi Kim",
"Sawangarun Wanlada",
"Mandasari Masita",
"Morita Kei-ichi",
"Kayamori Kou",
"Yamaguchi Akira",
"Sakamoto Kei"
] | creative-commons |
1
Genomic characteristics and clinical significance of CD56+ Circulating Tumor Cells in
Small Cell Lung Carcinoma
Charles RICORDEL*1,2, Laura CHAILLOT*1, Efstathios-Iason VLACHAVAS*3,4, Marianthi
LOGOTHETI3, Anna JOUANNIC1, Thomas DESVALLEES5,6, Gwendoline LECUYER1,
Marc AUBRY1, Georgia KONTOGIANNI6, Chara MA... | 2022 | Genomic characteristics and clinical significance of CD56+ Circulating Tumor Cells in Small Cell Lung Carcinoma | 10.1101/2022.04.30.487775 | [
"Ricordel Charles",
"Chaillot Laura",
"Vlachavas Efstathios-Iason",
"Logotheti Marianthi",
"Jouannic Anna",
"Desvallees Thomas",
"Lecuyer Gwendoline",
"Aubry Marc",
"Kontogianni Georgia",
"Mastrokalou Chara",
"Jouan Florence",
"Jarry Ulrich",
"Corre Romain",
"Guen Yannick Le",
"Guillaude... | null |
1
Title
High throughput CRISPR screening identifies genes involved in macrophage viability
and inflammatory pathways
Authors
Sergio Covarrubias1, Apple Vollmers1, Allyson Capili1, Michael Boettcher3-6, Elektra K.
Robinson1, Laura O’Briain1, Christopher Vollmers2, James Blau3-5, Michael McManus3-5
and Susan C... | 2019 | High throughput CRISPR screening identifies genes involved in macrophage viability and inflammatory pathways | 10.1101/807164 | [
"Covarrubias Sergio",
"Vollmers Apple",
"Capili Allyson",
"Boettcher Michael",
"Robinson Elektra K.",
"O’Briain Laura",
"Vollmers Christopher",
"Blau James",
"McManus Michael",
"Carpenter Susan"
] | null |
1
Arp2/3
and
Unc45
maintain
heterochromatin
stability
in
Drosophila
polytene
chromosomes.
George Dialynas1, Laetitia Delabaere1, and Irene Chiolo1*
*Correspondence: chiolo@usc.edu
1Department of Molecular and Computational Biology, University of Southern California, Los
Angeles, 90089, United S... | 2019 | Arp2/3 and Unc45 maintain heterochromatin stability in Drosophila polytene chromosomes | 10.1101/679548 | [
"Dialynas George",
"Delabaere Laetitia",
"Chiolo Irene"
] | creative-commons |
BiGen: Integrative Clinical and Brain-Imaging
Genetics Analysis Using Structural Equation Model
Samar S. M. Elsheikh*1, Emile R. Chimusa2, Alessandro
Crimi3,4, and Nicola J. Mulder1
Abstract
The identification of genetic variants associated with complex brain diseases has evolved in the past decades. Studies
in the field... | 2020 | BiGen: Integrative Clinical and Brain-Imaging Genetics Analysis Using Structural Equation Model | 10.1101/2020.02.04.934596 | [
"Elsheikh Samar S. M.",
"Chimusa Emile R.",
"Crimi Alessandro",
"Mulder Nicola J."
] | creative-commons |
1
Title: Genomic underpinnings of population persistence in Isle Royale moose
1
2
Authors: Christopher C. Kyriazis1*, Annabel C. Beichman2, Kristin E. Brzeski3, Sarah R. Hoy3, Rolf
3
O. Peterson3, John A. Vucetich3, Leah M. Vucetich3, Kirk E. Lohmueller1,4,5†*, Robert K. Wayne1†*
4
5
1Department of Ecolo... | 2022 | Genomic underpinnings of population persistence in Isle Royale moose | 10.1101/2022.04.15.488504 | [
"Kyriazis Christopher C.",
"Beichman Annabel C.",
"Brzeski Kristin E.",
"Hoy Sarah R.",
"Peterson Rolf O.",
"Vucetich John A.",
"Vucetich Leah M.",
"Lohmueller Kirk E.",
"Wayne Robert K."
] | creative-commons |
Modeling the Pancreatic Cancer Microenvironment in
Search of Control Targets
Daniel Plaugher, David Murrugarra
May 5, 2021
Abstract
Pancreatic Ductal Adenocarcinoma is among the leading causes of cancer related deaths glob-
ally due to its extreme difficulty to detect and treat. Recently, research focus has shifted to a... | 2021 | Modeling the Pancreatic Cancer Microenvironment in Search of Control Targets | 10.1101/2021.05.04.442611 | [
"Plaugher Daniel",
"Murrugarra David"
] | creative-commons |
Frequency Spectra and the Color of Cellular Noise
Ankit Gupta and Mustafa Khammash
Department of Biosystems Science and Engineering
ETH Zurich
Mattenstrasse 26
4058 Basel, Switzerland.
September 15, 2020
Abstract
The invention of the Fourier integral in the 19th century laid the foundation for today’s modern
spectral a... | 2020 | Frequency Spectra and the Color of Cellular Noise | 10.1101/2020.09.15.292664 | [
"Gupta Ankit",
"Khammash Mustafa"
] | creative-commons |
1
PTEN mutant NSCLC require ATM to suppress pro-apoptotic signalling and evade
1
radiotherapy
2
3
Thomas Fischer1,2,3, Oliver Hartmann2,3,*, Michaela Reissland2,3*, Cristian Prieto-
4
Garcia2,3, Kevin Klann4, Christina Schülein-Völk5, Bülent Polat1,6, Elena Gerhard-
5
Hartmann6,7, Mathias Rosenfeldt6,7, Chr... | 2021 | PTEN mutant NSCLC require ATM to suppress pro-apoptotic signalling and evade radiotherapy | 10.1101/2021.07.24.453632 | [
"Fischer Thomas",
"Hartmann Oliver",
"Reissland Michaela",
"Prieto-Garcia Cristian",
"Klann Kevin",
"Schülein-Völk Christina",
"Polat Bülent",
"Gerhard-Hartmann Elena",
"Rosenfeldt Mathias",
"Münch Christian",
"Flentje Michael",
"Diefenbacher Markus E."
] | creative-commons |
Kinetic control in amyloid polymorphism: Different agitation and solution conditions
promote distinct amyloid polymorphs of alpha-synuclein
Santosh Devi1£, Dushyant Kumar Garg1£, Rajiv Bhat1*
1School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067
£Contributed equally
*Correspondence: rajivbhat@m... | 2022 | Kinetic control in amyloid polymorphism: Different agitation and solution conditions promote distinct amyloid polymorphs of alpha-synuclein | 10.1101/2022.11.25.517910 | [
"Devi Santosh",
"Garg Dushyant Kumar",
"Bhat Rajiv"
] | creative-commons |
1
1
Development and Evaluation of a Colloidal Gold
2
Immunofiltration Assay for Penside Diagnosis of Visceral
3
Schistosomosis in Cattle
4
Shivani Mamane1, N. Jeyathilakan1, Bhaskaran. Ravi. Latha1 and T. M. A. Senthilkumar2
5
1Department of Veterinary Parasitology, Madras Veterinary College, Tamil Nadu Veterinary an... | 2022 | Development and Evaluation of a Colloidal Gold Immunofiltration Assay for Penside Diagnosis of Visceral Schistosomosis in Cattle | 10.1101/2022.05.12.491591 | [
"Mamane Shivani",
"Jeyathilakan N.",
"Latha Bhaskaran. Ravi.",
"Senthilkumar T. M. A."
] | creative-commons |
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