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|---|---|---|---|---|---|
CD4+ T cell subsets present stable relationships in their T cell receptor repertoires
1
Shiyu Wang1, 2, 3, Longlong Wang1, 2, 3, Ya Liu2, 3, 4
2
3
1. BGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, China
4
2. BGI-Shenzhen, Shenzhen 518083, China
5
3. China National GeneBank,... | 2020 | CD4+ T cell subsets present stable relationships in their T cell receptor repertoires | 10.1101/2020.11.01.364224 | [
"Wang Shiyu",
"Wang Longlong",
"Liu Ya"
] | creative-commons |
1
A global indicator of utilised wildlife populations: regional trends
1
and the impact of management
2
3
Louise McRae1,, Robin Freeman1, Jonas Geldmann2,3, Grace B. Moss3, Louise Kjær-Hansen2 and Neil
4
D. Burgess2,4
5
1 Institute of Zoology, Zoological Society of London, London, UK
6
2 Center for M... | 2021 | A global indicator of utilised wildlife populations: regional trends and the impact of management | 10.1101/2020.11.02.365031 | [
"McRae Louise",
"Freeman Robin",
"Geldmann Jonas",
"Moss Grace B.",
"Kjær-Hansen Louise",
"Burgess Neil D."
] | null |
Polymorphisms in Human Cytomegalovirus gO Exert Epistatic Influences on Cell-Free and Cell-To-Cell
1
Spread, and Antibody Neutralization on gH Epitopes.
2
3
4
Le Zhang Day3,4, Cora Stegmann1,4, Eric P. Schultz 1, 2, 4, Jean-Marc Lanchy1,4, Qin Yu1,4 , and Brent J.
5
Ryckman1,2,3,4*
6
7
Division of Biol... | 2020 | Polymorphisms in Human Cytomegalovirus gO Exert Epistatic Influences on Cell-Free and Cell-To-Cell Spread, and Antibody Neutralization on gH Epitopes | 10.1101/867234 | [
"Day Le Zhang",
"Stegmann Cora",
"Schultz Eric P.",
"Lanchy Jean-Marc",
"Yu Qin",
"Ryckman Brent J."
] | creative-commons |
DRAFT
High Throughput Virtual Screening and
1
Validation of a SARS-CoV-2 Main Protease
2
Non-Covalent Inhibitor
3
Austin Clydea,b,m, Stephanie Galanied,m, Daniel W. Knellerc,m, Heng Maa,m, Yadu Babujia,l,m, Ben Blaiszika,l,m, Alexander Bracea,m,
4
Thomas Brettini,m, Kyle Charda,b,l,m, Ryan Charda,l,m, Leighton Coatesk,... | 2021 | High Throughput Virtual Screening and Validation of a SARS-CoV-2 Main Protease Non-Covalent Inhibitor | 10.1101/2021.03.27.437323 | [
"Clyde Austin",
"Galanie Stephanie",
"Kneller Daniel W.",
"Ma Heng",
"Babuji Yadu",
"Blaiszik Ben",
"Brace Alexander",
"Brettin Thomas",
"Chard Kyle",
"Chard Ryan",
"Coates Leighton",
"Foster Ian",
"Hauner Darin",
"Kertesz Vilmos",
"Kumar Neeraj",
"Lee Hyungro",
"Li Zhuozhao",
"Mer... | null |
1
Now you see it, now you don’t: Overlapping neural representations for the position of visible and
1
imagined objects
2
Amanda K. Robinsona,b,c, Tijl Grootswagersa,b,c, Sophia M. Shateka, Jack Gerbonia, Alex O. Holcombea,
3
Thomas A. Carlsona,b
4
5
a School of Psychology, University of Sydney, NSW, 2006,... | 2020 | Now you see it, now you don’t: Overlapping neural representations for the position of visible and imagined objects | 10.1101/2020.03.02.974162 | [
"Robinson Amanda K.",
"Grootswagers Tijl",
"Shatek Sophia M.",
"Gerboni Jack",
"Holcombe Alex O.",
"Carlson Thomas A."
] | null |
Single-cell Multi-omics reveal heterogeneity and metastasis potential in different
1
liver cancer cell lines
2
3
4
Shanshan Wang1,2,4, Jiarui Xie2,3,4, Xuanxuan Zou1,2,4, Taotao Pan2, Zhenkun Zhuang2,3, Zifei
5
Wang1,2, Yue Yuan1,2, Longqi Liu2, Shiping Liu2 , Liang Wu1,2*
6
7
1BGI Education Center, Un... | 2020 | Single-cell Multi-omics reveal heterogeneity and metastasis potential in different liver cancer cell lines | 10.1101/2020.11.03.367532 | [
"Wang Shanshan",
"Xie Jiarui",
"Zou Xuanxuan",
"Pan Taotao",
"Zhuang Zhenkun",
"Wang Zifei",
"Yuan Yue",
"Liu Longqi",
"Liu Shiping",
"Wu Liang"
] | null |
1
TMPRSS2 and furin are both essential for proteolytic activation and spread of SARS-
1
CoV-2 in human airway epithelial cells and provide promising drug targets
2
3
4
Dorothea Bestle1#, Miriam Ruth Heindl1#, Hannah Limburg1#, Thuy Van Lam van2, Oliver
5
Pilgram2, Hong Moulton3, David A. Stein3, Kornelia ... | 2020 | TMPRSS2 and furin are both essential for proteolytic activation and spread of SARS-CoV-2 in human airway epithelial cells and provide promising drug targets | 10.1101/2020.04.15.042085 | [
"Bestle Dorothea",
"Heindl Miriam Ruth",
"Limburg Hannah",
"van Thuy Van Lam",
"Pilgram Oliver",
"Moulton Hong",
"Stein David A.",
"Hardes Kornelia",
"Eickmann Markus",
"Dolnik Olga",
"Rohde Cornelius",
"Becker Stephan",
"Klenk Hans-Dieter",
"Garten Wolfgang",
"Steinmetzer Torsten",
"B... | creative-commons |
Towards improved resistance of Corynebacterium
1
glutamicum against nisin
2
3
Dominik Weixler1, Oliver Goldbeck1, Gerd. M. Seibold2, Bernhard J. Eikmanns1, and
4
Christian U. Riedel1,*
5
6
1 Institute of Microbiology and Biotechnology, University of Ulm, Ulm, Germany
7
2 Department of Biotechnology an... | 2021 | Towards improved resistance of against nisin | 10.1101/2021.08.09.454123 | [
"Weixler Dominik",
"Goldbeck Oliver",
"Seibold Gerd. M.",
"Eikmanns Bernhard J.",
"Riedel Christian U."
] | creative-commons |
Snapper: a high-sensitive algorithm to detect methylation
motifs based on Oxford Nanopore reads
Dmitry N. Konanov1$, Vladislav V. Babenko2, Aleksandra M. Belova2, Arina G. Madan2, Daria
I. Boldyreva2, Oksana E. Glushchenko1, Ivan O. Butenko1, Dmitry E. Fedorov1, Aleksandr I.
Manolov1, Vassili N. Lazarev2, Vadim M... | 2022 | Snapper: a high-sensitive algorithm to detect methylation motifs based on Oxford Nanopore reads | 10.1101/2022.11.15.516621 | [
"Konanov Dmitry N.",
"Babenko Vladislav V.",
"Belova Aleksandra M.",
"Madan Arina G.",
"Boldyreva Daria I.",
"Glushchenko Oksana E.",
"Butenko Ivan O.",
"Fedorov Dmitry E.",
"Manolov Aleksandr I.",
"Lazarev Vassili N.",
"Govorun Vadim M.",
"Ilina Elena N."
] | creative-commons |
1
Magneto-acoustic protein nanostructures for non-invasive imaging of tissue
1
mechanics in vivo
2
3
Whee-Soo Kim1,2,3,#, Sungjin Min4,#, Su Kyeom Kim4, Sunghwi Kang2,3, Hunter Davis1,
4
Avinoam Bar-Zion1, Dina Malounda1, Yu Heun Kim4, Soohwan An4, Jae-Hyun Lee2,3, Soo Han
5
Bae5,6, Jin Gu Lee7, Mins... | 2022 | Magneto-acoustic protein nanostructures for non-invasive imaging of tissue mechanics | 10.1101/2022.05.26.493158 | [
"Kim Whee-Soo",
"Min Sungjin",
"Kim Su Kyeom",
"Kang Sunghwi",
"Davis Hunter",
"Bar-Zion Avinoam",
"Malounda Dina",
"Kim Yu Heun",
"An Soohwan",
"Lee Jae-Hyun",
"Bae Soo Han",
"Lee Jin Gu",
"Kwak Minsuk",
"Cho Seung-Woo",
"Shapiro Mikhail G.",
"Cheon Jinwoo"
] | null |
Analysis of continuous infusion functional PET (fPET) in the human
brain
Shenpeng Li1,2, Sharna D. Jamadar1,3,4, Phillip G.D. Ward1,3,4, Malin Premaratne2, Gary F.
Egan1,3,4 and Zhaolin Chen1
1Monash Biomedical Imaging, Monash University, Melbourne, Victoria, Australia
2Department of Electrical and Computer Sy... | 2019 | Analysis of continuous infusion functional PET (fPET) in the human brain | 10.1101/778357 | [
"Li Shenpeng",
"Jamadar Sharna D.",
"Ward Phillip G.D.",
"Premaratne Malin",
"Egan Gary F.",
"Chen Zhaolin"
] | creative-commons |
Inhibitory control of active expiration by the Bötzinger complex in rats
1
2
Karine C. Flor1,#, William H. Barnett2,#, Marlusa Karlen-Amarante1, Yaroslav Molkov2,3,& and
3
Daniel B. Zoccal1,&
4
5
1Department of Physiology and Pathology, School of Dentistry of Araraquara, São Paulo State
6
University (UNES... | 2019 | Inhibitory control of active expiration by the Bötzinger complex in rats | 10.1101/2019.12.19.883199 | [
"Flor Karine C.",
"Barnett William H.",
"Karlen-Amarante Marlusa",
"Molkov Yaroslav",
"Zoccal Daniel B."
] | null |
1
Design and specificity of long ssDNA donors for CRISPR-based knock-in
Han Li1,6, Kyle A. Beckman2,#, Veronica Pessino3, Bo Huang4,5, Jonathan S. Weissman1,6,* and Manuel
D. Leonetti1,6,#,*
1 Department of Cellular and Molecular Pharmacology, 2 Department of Pediatrics, 3 Graduate
Program in Biophysics... | 2019 | Design and specificity of long ssDNA donors for CRISPR-based knock-in | 10.1101/178905 | [
"Li Han",
"Beckman Kyle A.",
"Pessino Veronica",
"Huang Bo",
"Weissman Jonathan S.",
"Leonetti Manuel D."
] | creative-commons |
Development of copy number assays for detection and surveillance of
piperaquine resistance associated plasmepsin 2/3 copy number variation in
Plasmodium falciparum
Christopher G Jacob*1, Megan R Ansbro*1,2, Roberto Amato1, Mihir Kekre1, Ranitha
Vongpromek3, Mehul Dhorda3, Chanaki Amaratunga2, Sokunthea Sreng4, Se... | 2019 | Development of copy number assays for detection and surveillance of piperaquine resistance associated copy number variation in | 10.1101/655209 | [
"Jacob Christopher G",
"Ansbro Megan R",
"Amato Roberto",
"Kekre Mihir",
"Vongpromek Ranitha",
"Dhorda Mehul",
"Amaratunga Chanaki",
"Sreng Sokunthea",
"Suon Seila",
"Miotto Olivo",
"Fairhurst Rick M",
"Wellems Thomas E",
"Kwiatkowski Dominic P"
] | null |
Gains and losses of the epiphytic lifestyle in epidendroid orchids: review and new
analyses with succulence traits
Géromine Collobert1, Benoît Perez-Lamarque2, Jean-Yves Dubuisson1* and Florent Martos1*
1 Institut de Systématique, Évolution, Biodiversité (ISYEB), Muséum national d’Histoire
naturelle, CNRS, Sorbonne Uni... | 2022 | Gains and losses of the epiphytic lifestyle in epidendroid orchids: review and new analyses with succulence traits | 10.1101/2022.09.30.510324 | [
"Collobert Géromine",
"Perez-Lamarque Benoît",
"Dubuisson Jean-Yves",
"Martos Florent"
] | null |
1
Neural basis for adaptive motor behavior during car driving
1
Ryu Ohata1*, Kenji Ogawa2, and Hiroshi Imamizu1,3,4*
2
3
1Department of Psychology, Graduate School of Humanities and Sociology, The University
4
of Tokyo, Hongo 7-3-1, Bunkyo-ku, Tokyo 113-0033, Japan
5
2Department of Psychology, Graduate S... | 2021 | Neural basis for adaptive motor behavior during car driving | 10.1101/2021.10.03.462866 | [
"Ohata Ryu",
"Ogawa Kenji",
"Imamizu Hiroshi"
] | null |
1
β-catenin perturbations control differentiation programs in mouse embryonic
1
stem cells
2
Elisa Pedone1,2,+, Mario Failli3,4, Gennaro Gambardella3,4, Rossella De Cegli3,
3
Antonella La Regina1,2,5, Diego di Bernardo3,4 and Lucia Marucci1,2,6,+.
4
1Department of Engineering Mathematics, University of Br... | 2021 | β-catenin perturbations control differentiation programs in mouse embryonic stem cells | 10.1101/2020.05.15.098137 | [
"Pedone Elisa",
"Failli Mario",
"Gambardella Gennaro",
"De Cegli Rossella",
"La Regina Antonella",
"di Bernardo Diego",
"Marucci Lucia"
] | creative-commons |
1
SARS-CoV-2 Omicron BA.2.75 variant may be much more infective than
1
preexisting variants
2
3
Aki Sugano a,b, Yutaka Takaoka b,c,d,e,f,g, *, Haruyuki Kataguchi c,d,
4
Minoru Kumaoka b,d, Mika Ohta b,c,d,f, Shigemi Kimura b, Masatake Araki g,,
5
Yoshitomo Morinaga h, Yoshihiro Yamamoto i
6
7
a Cen... | 2022 | SARS-CoV-2 Omicron BA.2.75 variant may be much more infective than preexisting variants | 10.1101/2022.08.25.505217 | [
"Sugano Aki",
"Takaoka Yutaka",
"Kataguchi Haruyuki",
"Kumaoka Minoru",
"Ohta Mika",
"Kimura Shigemi",
"Araki Masatake",
"Morinaga Yoshitomo",
"Yamamoto Yoshihiro"
] | creative-commons |
1
TITLE: Alpha globin variation in the long-tailed macaque suggests malaria selection
1
2
AUTHORS:
3
C.L. Faust1,2,3, F. Rangkuti1, S. G. Preston1, A. Boyd1, P. Flammer1, B. Bia1, N. J. Rose4, F.
4
B. Piel1,5, A. L. Smith1*, A.P. Dobson3, S. Gupta1*, and B. S. Penman1,6*
5
*Corresponding authors
6
... | 2020 | Alpha globin variation in the long-tailed macaque suggests malaria selection | 10.1101/2020.10.21.344853 | [
"Faust C.L.",
"Rangkuti F.",
"Preston S. G.",
"Boyd A.",
"Flammer P.",
"Bia B.",
"Rose N. J.",
"Piel F. B.",
"Smith A. L.",
"Dobson A.P.",
"Gupta S.",
"Penman B. S."
] | creative-commons |
Fighting cancer with oncolytic viral therapy: identifying threshold
parameters for success
Sana Jahedi1, Lin Wang2, and James Watmough3
Department of Mathematics and Statistics, University of New Brunswick, NB, Canada
Abstract
We model interactions between cancer cells and free virus during oncolytic viral therapy. One... | 2021 | Fighting cancer with oncolytic viral therapy: identifying threshold parameters for success | 10.1101/2021.07.19.452846 | [
"Jahedi Sana",
"Wang Lin",
"Watmough James"
] | null |
1
Title: Candidate targets for immune responses to 2019-Novel Coronavirus (nCoV): sequence
homology- and bioinformatic-based predictions
Authors Alba Grifoni1, John Sidney1, Yun Zhang2, Richard H Scheuermann1,2,3, Bjoern Peters1,4
and Alessandro Sette1,4*
Affiliations: 1Division of Vaccine Discovery, La Jolla... | 2020 | Candidate targets for immune responses to 2019-Novel Coronavirus (nCoV): sequence homology- and bioinformatic-based predictions | 10.1101/2020.02.12.946087 | [
"Grifoni Alba",
"Sidney John",
"Zhang Yun",
"Scheuermann Richard H",
"Peters Bjoern",
"Sette Alessandro"
] | creative-commons |
Preprint
Conformational Ensembles of
1
Non-Coding Elements in the
2
SARS-CoV-2 Genome from Molecular
3
Dynamics Simulations
4
Sandro Bottaro1,*, Giovanni Bussi2, Kresten Lindorff-Larsen1,*
5
*For correspondence:
sandro.bottaro@bio.ku.dk (SB);
lindorff@bio.ku.dk (KLL)
1Structural Biology and NMR Laboratory & Linderstrøm-L... | 2020 | Conformational Ensembles of Non-Coding Elements in the SARS-CoV-2 Genome from Molecular Dynamics Simulations | 10.1101/2020.12.11.421784 | [
"Bottaro Sandro",
"Bussi Giovanni",
"Lindorff-Larsen Kresten"
] | creative-commons |
Walmsley et al., 12 04 2021 – preprint copy - BioRxiv
1
Imatinib mesylate induces necroptotic cell death and impairs autophagic flux
in human cardiac progenitor cells
Robert Walmsley1, Derek S. Steele1, Georgina M. Ellison-Hughes2, Andrew J. Smith1,2,*
1 School of Biomedical Sciences, Faculty of Biological Scien... | 2021 | Imatinib mesylate induces necroptotic cell death and impairs autophagic flux in human cardiac progenitor cells | 10.1101/2021.04.12.439436 | [
"Walmsley Robert",
"Steele Derek S.",
"Ellison-Hughes Georgina M.",
"Smith Andrew J."
] | creative-commons |
Title Page
Title: Deep sequencing of pre-translational mRNPs reveals hidden flux through evolutionarily
conserved AS-NMD pathways
Authors and affiliations: Carrie Kovalak1,2, Scott Donovan3, Alicia A. Bicknell3, Mihir Metkar1,3,
Melissa J. Moore1,2,3*
1 RNA Therapeutics Institute, University of Massachu... | 2020 | Deep sequencing of pre-translational mRNPs reveals hidden flux through evolutionarily conserved AS-NMD pathways | 10.1101/847004 | [
"Kovalak Carrie",
"Donovan Scott",
"Bicknell Alicia A.",
"Metkar Mihir",
"Moore Melissa J."
] | creative-commons |
Human induced pluripotent stem cell-derived neuroectodermal epithelial cells
1
mistaken for blood-brain barrier-forming endothelial cells
2
3
Tyler M. Lu1,2, David Redmond3, Tarig Magdeldin4, Duc-Huy T. Nguyen1, Amanda
4
Snead5,6, Andrew Sproul5,6, Jenny Xiang7, Koji Shido1, Howard A. Fine4, Zev Rosenwaks2,
5... | 2019 | Human induced pluripotent stem cell-derived neuroectodermal epithelial cells mistaken for blood-brain barrier-forming endothelial cells | 10.1101/699173 | [
"Lu Tyler M.",
"Redmond David",
"Magdeldin Tarig",
"Nguyen Duc-Huy T.",
"Snead Amanda",
"Sproul Andrew",
"Xiang Jenny",
"Shido Koji",
"Fine Howard A.",
"Rosenwaks Zev",
"Rafii Shahin",
"Agalliu Dritan",
"Lis Raphaël"
] | null |
Human airway cells prevent SARS-CoV-2 multibasic cleavage site cell culture adaptation
1
2
Mart M. Lamers1, Anna Z. Mykytyn1, Tim I. Breugem1, Yiquan Wang2, Douglas C. Wu2,3,
3
Samra Riesebosch1, Petra B. van den Doel1, Debby Schipper1, Theo Bestebroer1, Nicholas C.
4
Wu2,4,5, Bart L. Haagmans1*
5
6
1 Vir... | 2021 | Human airway cells prevent SARS-CoV-2 multibasic cleavage site cell culture adaptation | 10.1101/2021.01.22.427802 | [
"Lamers Mart M.",
"Mykytyn Anna Z.",
"Breugem Tim I.",
"Wang Yiquan",
"Wu Douglas C.",
"Riesebosch Samra",
"van den Doel Petra B.",
"Schipper Debby",
"Bestebroer Theo",
"Wu Nicholas C.",
"Haagmans Bart L."
] | creative-commons |
1
Tumor protein D54 binds intracellular nanovesicles via an amphipathic
lipid packing sensor (ALPS) motif
Antoine Reynaud, Maud Magdeleine, Amanda Patel, Anne Sophie Gay, Delphine Debayle,
Sophie Abelanet, and Bruno Antonny
Université Côte d’Azur et CNRS, Institut de Pharmacologie Moléculaire et Cellulaire, ... | 2021 | Tumor protein D54 binds intracellular nanovesicles an amphipathic lipid packing sensor (ALPS) motif | 10.1101/2021.12.03.471088 | [
"Reynaud Antoine",
"Magdeleine Maud",
"Patel Amanda",
"Gay Anne Sophie",
"Debayle Delphine",
"Abelanet Sophie",
"Antonny Bruno"
] | creative-commons |
1
Gaze direction as equilibrium: more evidence from spatial and
1
temporal aspects of small-saccade triggering in the rhesus
2
macaque monkey
3
4
Ziad M. Hafed1,2* and Laurent Goffart3*
5
6
1Werner Reichardt Centre for Integrative Neuroscience, Tuebingen University, Tuebingen, Germany
7
72076
8
2He... | 2019 | Gaze direction as equilibrium: more evidence from spatial and temporal aspects of small-saccade triggering in the rhesus macaque monkey | 10.1101/766212 | [
"Hafed Ziad M.",
"Goffart Laurent"
] | creative-commons |
Mini-batch optimization enables training of ODE models
on large-scale datasets
Paul Stapor 1, 2, Leonard Schmiester 1, 2, Christoph Wierling 3,
Bodo M.H. Lange 3, Daniel Weindl 1, and Jan Hasenauer 1, 2, 4, ∗
1 Helmholtz Zentrum München - German Research Center for Environmental Health,
Institute of Computational Biolo... | null | Mini-batch optimization enables training of ODE models on large-scale datasets | 10.1101/859884 | [
"Stapor Paul",
"Schmiester Leonard",
"Wierling Christoph",
"Lange Bodo M.H.",
"Weindl Daniel",
"Hasenauer Jan"
] | creative-commons |
Page 1 of 24
Title:
Collateral development and arteriogenesis in hindlimbs of domestic swine after ligation
of arterial inflow
Author List:
Gao Y#1, Patel NS#1,2, , Aravind S#1,2, Fuglestad M1, Casale GP1, *Pipinos II##1,2, *Carlson MA##1,2,3
1. Department of Surgery, University of Nebraska Medical Center, Om... | 2019 | Collateral development and arteriogenesis in hindlimbs of domestic swine after ligation of arterial inflow | 10.1101/491928 | null | creative-commons |
1
1
2
3
A Patient-based Model to Investigate the Effect of
4
Micro-structure Scars on the Optogenetic Defibrillation Success: A Computational
5
Modelling Approach
6
7
Elham Zakeri Zafarghandi1, Fariba Bahrami1*
8
9
1 Human Motor Control and Computational Neuroscience Laboratory,
10
School of Electrical and Computer En... | 2020 | A Patient-based Model to Investigate the Effect of Micro-structure Scars on the Optogenetic Defibrillation Success: A Computational Modelling Approach | 10.1101/2020.08.13.249250 | [
"Zafarghandi Elham Zakeri",
"Bahrami Fariba"
] | creative-commons |
Equivalence of charge imbalance and external
electric fields during free energy calculations
of membrane electroporation
Gari Kasparyan and Jochen S. Hub∗
Theoretical Physics and Center for Biophysics, Saarland University, Saarbrücken, Germany
E-mail: jochen.hub@uni-saarland.de
Phone: +49 (0)681 302-2740. Fax: +49 (0)6... | 2023 | Equivalence of charge imbalance and external electric fields during free energy calculations of membrane electroporation | 10.1101/2023.01.13.523896 | [
"Kasparyan Gari",
"Hub Jochen S."
] | creative-commons |
The mechanism of the nucleo-sugar selection by multi-subunit RNA polymerases
Janne J. Mäkinen1, Yeonoh Shin2, Eeva Vieras1, Pasi Virta3, Mikko Metsä-Ketelä1, Katsuhiko S.
Murakami2*, Georgiy A. Belogurov1*
1University of Turku, Department of Biochemistry, Turku, Finland
2Department of Biochemistry and Molecular Bio... | 2020 | The mechanism of the nucleo-sugar selection by multi-subunit RNA polymerases | 10.1101/2020.06.30.179606 | [
"Mäkinen Janne J.",
"Shin Yeonoh",
"Vieras Eeva",
"Virta Pasi",
"Metsä-Ketelä Mikko",
"Murakami Katsuhiko S.",
"Belogurov Georgiy A."
] | creative-commons |
4 Current address: Northeast Ohio Medical University, 4209 St, OH-44, Rootstown, OH 44272
5 Current address: Ohio University Heritage College of Osteopathic Medicine, 35 W Green Dr,
Athens, OH 45701
miR-467 regulates inflammation and blood insulin and glucose
1
Jasmine Gajeton1,2, Irene Krukovets1, Revanth Yendamu... | 2020 | miR-467 regulates inflammation and blood insulin and glucose | 10.1101/666545 | [
"Gajeton Jasmine",
"Krukovets Irene",
"Yendamuri Revanth",
"Verbovetskiy Dmitriy",
"Vasanji Amit",
"Sul Lidiya",
"Stenina-Adognravi Olga"
] | null |
A Computational Toolset for Rapid Identification of SARS-CoV-2,
other Viruses, and Microorganisms from Sequencing Data
Shifu Chen1,2,*, Changshou He2, Yingqiang Li2, Zhicheng Li1 and Charles E Melançon III2
1 Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen,
Guangdong, 518055, China... | 2020 | A Computational Toolset for Rapid Identification of SARS-CoV-2, other Viruses, and Microorganisms from Sequencing Data | 10.1101/2020.05.12.092163 | [
"Chen Shifu",
"He Changshou",
"Li Yingqiang",
"Li Zhicheng",
"Melançon Charles E"
] | creative-commons |
1
Rational Design of a Protein Kinase A
1
Nuclear-cytosol Translocation Reporter
2
3
Allen K. Kim1,2,3*, Takanari Inoue1,2,3*
4
1Department of Biomedical Engineering, Johns Hopkins University, School of Medicine, Baltimore,
5
Maryland, United States.
6
2Department of Cell Biology, Johns Hopkins Universi... | 2019 | Rational Design of a Protein Kinase A Nuclear-cytosol Translocation Reporter | 10.1101/709766 | [
"Kim Allen K.",
"Inoue Takanari"
] | null |
1
TMEM135 is an LXR-inducible regulator of peroxisomal metabolism
Benjamin J. Renquist1, Thushara W. Madanayake1, Jon D. Hennebold2, Susma Ghimire1,
Caroline E. Geisler1, Yafei Xu1, Randy L. Bogan*1
1School of Animal & Comparative Biomedical Sciences, College of Agriculture & Life Sciences,
University of A... | 2019 | TMEM135 is an LXR-inducible regulator of peroxisomal metabolism | 10.1101/334979 | [
"Renquist Benjamin J.",
"Madanayake Thushara W.",
"Hennebold Jon D.",
"Ghimire Susma",
"Geisler Caroline E.",
"Xu Yafei",
"Bogan Randy L."
] | creative-commons |
Vascular and renal telomere shortening in mice exposed to chronic intermittent
hypoxia
Mohammad Badran PhD1, Bisher Abuyassin PhD2, Najib Ayas MD3, Don D. Sin MD4, Ismail Laher PhD*5
1 Department of Child Health and the Child Health Research Institute, University of Missouri School of
Medicine, Columbia, MO, USA
... | 2021 | Vascular and renal telomere shortening in mice exposed to chronic intermittent hypoxia | 10.1101/2021.02.25.432912 | [
"Badran Mohammad",
"Abuyassin Bisher",
"Ayas Najib",
"Sin Don D.",
"Laher Ismail"
] | creative-commons |
1
A multi-species co-occurrence index to avoid type II errors in null model testing
1
2
Vitalis K. Lagat1,2*, Guillaume Latombe3, Cang Hui1,4
3
4
1 Centre for Invasion Biology, Department of Mathematical Sciences, Stellenbosch
5
University, Matieland 7602, South Africa
6
2 DSI-NRF Centre of Exc... | 2021 | A multi-species co-occurrence index to avoid type II errors in null model testing | 10.1101/2021.11.03.467033 | [
"Lagat Vitalis K.",
"Latombe Guillaume",
"Hui Cang"
] | creative-commons |
Multi-organ signaling mobilizes tumor-associated erythroid cells
expressing immune checkpoint molecules
Yasuyo Sano, Toshimi Yoshida, Min-Kyung Choo, Yanek Jiménez-Andrade,
Kathryn R. Hill, Katia Georgopoulos, Jin Mo Park*
Cutaneous Biology Research Center, Massachusetts General Hospital and Harvard Medic... | 2020 | Multi-organ signaling mobilizes tumor-associated erythroid cells expressing immune checkpoint molecules | 10.1101/2020.07.31.231001 | [
"Sano Yasuyo",
"Yoshida Toshimi",
"Choo Min-Kyung",
"Jiménez-Andrade Yanek",
"Hill Kathryn R.",
"Georgopoulos Katia",
"Park Jin Mo"
] | creative-commons |
1
Title Page
1
Title: Mapping the human auditory cortex using spectrotemporal receptive fields generated with
2
magnetoencephalography
3
Author Names, Affiliations and Contact:
4
Jean-Pierre R. Falet (1) *, Jonathan Côté (1) *, Veronica Tarka (1), Zaida-Escila Martinez-
5
Moreno (1), Patrice Voss (1), Etienne... | 2020 | Mapping the human auditory cortex using spectrotemporal receptive fields generated with magnetoencephalography | 10.1101/2020.12.01.406843 | [
"Falet Jean-Pierre R.",
"Côté Jonathan",
"Tarka Veronica",
"Martinez-Moreno Zaida-Escila",
"Voss Patrice",
"de Villers-Sidani Etienne"
] | creative-commons |
1
EdU incorporation to assess cell proliferation and drug susceptibility for the brain-eating
1
amoeba, Naegleria fowleri.
2
3
Emma V. Troth1,2 and Dennis E. Kyle1,2,3*
4
5
Running Title: EdU incorporation in Naegleria fowleri
6
7
1Department of Infectious Diseases, University of Georgia, Athens, Ge... | 2021 | EdU incorporation to assess cell proliferation and drug susceptibility for the brain-eating amoeba, | 10.1101/2021.01.07.425827 | [
"Troth Emma V.",
"Kyle Dennis E."
] | creative-commons |
1
Kinetochores respond to subtle changes in the stability of
1
microtubule attachments
2
3
4
Jessica D. Warren1,2, Sarah Y. Valles1,2, and Duane A. Compton1,2
5
6
1. Department of Biochemistry and Cell Biology, Geisel School of Medicine, Hanover,
7
NH, United States.
8
2. Norris Cotton Cancer C... | 2021 | Kinetochores respond to subtle changes in the stability of microtubule attachments | 10.1101/2021.02.19.432040 | [
"Warren Jessica D.",
"Valles Sarah Y.",
"Compton Duane A."
] | creative-commons |
1
Epstein-Barr virus promotes survival through germinal center light zone chromatin
1
architecture
2
Joanne Dai1,2, Emma Heckenberg1, Lingyun Song3,4, Gregory E. Crawford3,4, Micah A. Luftig1,*
3
4
1Department of Molecular Genetics and Microbiology, Center for Virology, Duke University
5
School of Medicin... | 2020 | Epstein-Barr virus promotes survival through germinal center light zone chromatin architecture | 10.1101/2020.10.22.350108 | [
"Dai Joanne",
"Heckenberg Emma",
"Song Lingyun",
"Crawford Gregory E.",
"Luftig Micah A."
] | creative-commons |
NOX4 regulates TGFβ-induced proliferation and self-renewal in glioblastoma stem cells.
García-Gómez P, Dadras M, Bellomo C, Mezheyeuski A, Tzavlaki K, Moren A, Caja L.
Department of Medical Biochemistry and Microbiology, Science for Life Laboratory, Box 582,
Biomedical Center, Uppsala University, SE-75123 Uppsala,... | 2019 | NOX4 regulates TGFβ-induced proliferation and self-renewal in glioblastoma stem cells | 10.1101/804013 | [
"García-Gómez P",
"Dadras M",
"Bellomo C",
"Mezheyeuski A",
"Tzavlaki K",
"Moren A",
"Caja L"
] | creative-commons |
SARS-CoV-2 Envelope-mediated Golgi pH dysregulation interferes with ERAAP retention
in cells
Valerie Vargas-Zapata1†, Kristina M. Geiger1,2†, Dan Tran1, Jessica Ma3, Xiaowen Mao1,
Andreas S. Puschnik4, Laurent Coscoy1*
1 Division of Immunology and Molecular Medicine, Department of Molecular and Cell Biology,
U... | 2022 | SARS-CoV-2 Envelope-mediated Golgi pH dysregulation interferes with ERAAP retention in cells | 10.1101/2022.11.29.518257 | [
"Vargas-Zapata Valerie",
"Geiger Kristina M.",
"Tran Dan",
"Ma Jessica",
"Mao Xiaowen",
"Puschnik Andreas S.",
"Coscoy Laurent"
] | creative-commons |
1
Shedding Light on Microbial Dark Matter with A
1
Universal Language of Life
2
Hoarfrost A1,*, Aptekmann, A2, Farfañuk, G3, Bromberg Y2,*
3
1 Department of Marine and Coastal Sciences, Rutgers University, 71 Dudley Road, New Brunswick, NJ 08873, USA
4
2 Department of Biochemistry and Microbiology, 76 Lipman ... | 2020 | Shedding Light on Microbial Dark Matter with A Universal Language of Life | 10.1101/2020.12.23.424215 | [
"Hoarfrost A",
"Aptekmann A",
"Farfañuk G",
"Bromberg Y"
] | creative-commons |
1
Community Detection in a Weighted Directed Hypergraph Representation of Cell-to-cell
Communication Networks.
Rui Hou1,#, Michael Small2, 3, Alistair R. R. Forrest1,#
1. Harry Perkins Institute of Medical Research, QEII Medical Centre and Centre for Medical
Research, the University of Western Australia, PO Box 7... | 2020 | Community Detection in a Weighted Directed Hypergraph Representation of Cell-to-cell Communication Networks | 10.1101/2020.11.16.381566 | [
"Hou Rui",
"Small Michael",
"Forrest Alistair R. R."
] | creative-commons |
1
REGULAR ARTICLE
DIRECT DETECTION OF LISTERIA MONOCYTOGENES BY RECOMBINASE POLYMERASE
AMPLIFICATION
Hau Thi Tran, Diem Hong Tran, Trang Nguyen Minh Pham, Huong Thi Thu Phung*
Address:
NTT Hi-Tech Institute, Nguyen Tat Thanh University, 298A Nguyen Tat Thanh, Ho Chi Minh City, 700000, Vietnam, +8... | 2021 | DIRECT DETECTION OF BY RECOMBINASE POLYMERASE AMPLIFICATION | 10.1101/2021.05.22.445288 | [
"Tran Hau Thi",
"Tran Diem Hong",
"Pham Trang Nguyen Minh",
"Phung Huong Thi Thu"
] | creative-commons |
Reduced firing rates of pyramidal cells in frontal cortex of APP/PS1 can be restored by
acute treatment with levetiracetam
Jan L. Klee1, Amanda J Kiliaan2, Arto Lipponen3*, Francesco P. Battaglia1*
1) Department of Neuroinformatics, Radboud University, Nijmegen, the Netherlands
2) Department of Anatomy, Do... | 2019 | Reduced firing rates of pyramidal cells in frontal cortex of APP/PS1 can be restored by acute treatment with levetiracetam | 10.1101/739912 | [
"Klee Jan L.",
"Kiliaan Amanda J",
"Lipponen Arto",
"Battaglia Francesco P."
] | creative-commons |
1
1
2
3
Context-dependent choice and evaluation in real-world consumer behavior
4
5
6
A. Ross Otto1*, Sean Devine1, Eric Schulz2, Aaron M. Bornstein3†, & Kenway Louie4,5†
7
8
1Department of Psychology, McGill University, Montréal, Canada
9
2Max Planck Institute for Biological Cybernetics... | 2022 | Context-dependent choice and evaluation in real-world consumer behavior | 10.1101/2022.04.14.488290 | [
"Otto A. Ross",
"Devine Sean",
"Schulz Eric",
"Bornstein Aaron M.",
"Louie Kenway"
] | creative-commons |
“Preprint”
Influence of normobaric hypoxic exercise on endothelial
progenitor cell senescence by in vitro cultivation with
conditioned media
Jan-Frieder Harmsen1,2; Dennis Nebe1; Klara Brixius1; Alexander Schenk1; Wilhelm
Bloch1,3
¹Department of Molecular and Cellular Sports Medicine, German Sport University Col... | 2020 | Influence of normobaric hypoxic exercise on endothelial progenitor cell senescence by cultivation with conditioned media | 10.1101/2020.02.16.949677 | [
"Harmsen Jan-Frieder",
"Nebe Dennis",
"Brixius Klara",
"Schenk Alexander",
"Bloch Wilhelm"
] | creative-commons |
A scalable algorithm for clonal reconstruction from sparse time
course genomic sequencing data
Wazim Mohammed Ismail and Haixu Tang
Luddy school of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN 47405
Abstract
Long-term evolution experiments (LTEEs) reveal the dynamics of clonal compositio... | 2021 | A scalable algorithm for clonal reconstruction from sparse time course genomic sequencing data | 10.1101/2021.08.19.457037 | [
"Ismail Wazim Mohammed",
"Tang Haixu"
] | creative-commons |
1
Hypoxia Regulation of ndrgs
Nguyet Le#1, 2, Timothy Hufford#1, and Rachel Brewster1*
1. Department of Biological Sciences, University of Maryland Baltimore County,
Baltimore, Maryland 21250, USA
2. Department of Genetic Medicine, The Johns Hopkins University School of Medicine,
Baltimore, Maryland 2120... | 2020 | Hypoxia Regulation of | 10.1101/2020.12.16.422782 | [
"Le Nguyet",
"Hufford Timothy",
"Brewster Rachel"
] | null |
Early Life Exposure to Queen Mandibular Pheromone Mediates Persistent
1
Transcriptional Changes in the Brain of Honey bee Foragers
2
3
Authors: Tianfei Peng1, Anissa Kennedy*1, Yongqiang Wu1, Susanne Foitzik1, and
4
Christoph Grüter1,2
5
1 Institute of Molecular and Organismic Evolution, Johannes Gutenberg U... | 2022 | Early Life Exposure to Queen Mandibular Pheromone Mediates Persistent Transcriptional Changes in the Brain of Honey bee Foragers | 10.1101/2022.07.07.499229 | [
"Peng Tianfei",
"Kennedy Anissa",
"Wu Yongqiang",
"Foitzik Susanne",
"Grüter Christoph"
] | null |
1
Full article title:
1
Associations between childhood family emotional health, fronto-limbic grey matter volume, and saliva 5mC in
2
young adulthood
3
4
Authors:
5
JR Pfeiffer1,2, Angela C. Bustamante3, Grace S. Kim4, Don Armstrong2, Annchen R. Knodt5, Karestan C. Koenen6,
6
Ahmad R. Hariri5,7, Monica... | 2020 | Associations between childhood family emotional health, fronto-limbic grey matter volume, and saliva 5mC in young adulthood | 10.1101/2020.10.26.355347 | [
"Pfeiffer JR",
"Bustamante Angela C.",
"Kim Grace S.",
"Armstrong Don",
"Knodt Annchen R.",
"Koenen Karestan C.",
"Hariri Ahmad R.",
"Uddin Monica"
] | creative-commons |
1
Regulation of dctA and DctA by cAMP-CRP and EIIAGlc at the transcriptional
and post-translational levels in E. coli: Consequences for aerobic uptake and
metabolism of C4-dicarboxylates
Christopher Schubert and Gottfried Unden
Institute for Molecular Physiology (IMP), Microbiology and Wine Research... | 2021 | Regulation of and DctA by cAMP-CRP and EIIA at the transcriptional and post-translational levels in : Consequences for aerobic uptake and metabolism of C-dicarboxylates | 10.1101/2021.12.01.470772 | [
"Schubert Christopher",
"Unden Gottfried"
] | creative-commons |
Are railways detrimental to bird populations?
A BDACI study on the construction of the Bothnia
Line Railway
Adriaan de Jong
Dept. of Wildlife, Fish, and Environmental Studies
Swedish University of Agricultural Sciences (SLU)
adriaan.de.jong@slu.se
Umeå, Sweden
3rd of July 2019
The author welcomes comm... | 2019 | Are railways detrimental to bird populations? A BDACI study on the construction of the Bothnia Line Railway | 10.1101/691535 | null | creative-commons |
1
A method for validating the accuracy of NMR protein structures
Nicholas J. Fowler1, Adnan Sljoka2,3* and Mike P. Williamson1*
1Dept of Molecular Biology and Biotechnology, University of Sheffield, UK. 2RIKEN Center for
Advanced Intelligence Project, RIKEN, 1-4-1 Nihombashi, Chuo-ku, Tokyo, 103-0027 Japan. 3De... | 2020 | A method for validating the accuracy of NMR protein structures | 10.1101/2020.04.20.048777 | [
"Fowler Nicholas J.",
"Sljoka Adnan",
"Williamson Mike P."
] | null |
1
Original Full-Length Article
Genotyping Test Development and Genotyping Survey of Pakistani population of
Holstein Friesian imported from Different Origins for A1/A2 SNP in Beta-casein Gene
Waqas Rafique Ali, Imran Amin, Muhammad Asif, Shahid Mansoor*
National Institute for Biotechnology and Genetic Engine... | 2019 | Genotyping Test Development and Genotyping Survey of Pakistani population of Holstein Friesian imported from Different Origins for A1/A2 SNP in Beta-casein Gene | 10.1101/720045 | [
"Ali Waqas Rafique",
"Amin Imran",
"Asif Muhammad",
"Mansoor Shahid"
] | creative-commons |
In silico Identification and Functional Characterization of Conserved
miRNAs in Fibre Biogenesis Crop Corchorus capsularis
Mahmudul Hasan1,2*, Milad Ahmed1,3, Foeaz Ahmed1,4, Jamil Ahmed1,5, Mst Rubaiat Nazneen
Akhand1,5, Kazi Faizul Azim1,6, Md. Abdus Shukur Imran1,2, Syeda Farjana Hoque1,2
1Faculty of Bi... | 2020 | Identification and Functional Characterization of Conserved miRNAs in Fibre Biogenesis Crop | 10.1101/2020.04.22.056176 | [
"Hasan Mahmudul",
"Ahmed Milad",
"Ahmed Foeaz",
"Ahmed Jamil",
"Nazneen Akhand Mst Rubaiat",
"Azim Kazi Faizul",
"Shukur Imran Md. Abdus",
"Hoque Syeda Farjana"
] | null |
1
FGF10 triggers de novo alveologenesis in a BPD model: impact on the resident
mesenchymal niche cells
Sara Taghizadeh1*, Cho-Ming Chao2,1*, Stefan Guenther3, Lea Glaser1, Luisa Gersmann1,
Gabriela Michel1, Simone Kraut1, Kerstin Goth1, Janine Koepke1, Monika Heiner1, Ana Ivonne
Vazquez-Armendariz4, Susanne He... | 2022 | FGF10 triggers de novo alveologenesis in a BPD model: impact on the resident mesenchymal niche cells | 10.1101/2022.03.14.484213 | [
"Taghizadeh Sara",
"Chao Cho-Ming",
"Guenther Stefan",
"Glaser Lea",
"Gersmann Luisa",
"Michel Gabriela",
"Kraut Simone",
"Goth Kerstin",
"Koepke Janine",
"Heiner Monika",
"Vazquez-Armendariz Ana Ivonne",
"Herold Susanne",
"Samakovolis Christos",
"Weissmann Norbert",
"Ricci Francesca",
... | null |
Computation of the mitochondrial age distribution along the axon length
Ivan A. Kuznetsov(a), (b) and Andrey V. Kuznetsov(c)
(a) Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
(b) Department of Bioengineering, University of Pennsylvania, Philadelphia, PA 19104, USA
(c) Depa... | 2022 | Computation of the mitochondrial age distribution along the axon length | 10.1101/2021.09.12.459928 | [
"Kuznetsov Ivan A.",
"Kuznetsov Andrey V."
] | creative-commons |
Eye-tracking for low vision with virtual reality (VR): testing status quo
1
usability of the HTC Vive Pro Eye
2
Alexandra Sipatchin 1, Siegfried Wahl1,2, Katharina Rifai 1,2
3
4
1Institute for Ophthalmic Research, Tübingen, Germany.
5
2Carl Zeiss Vision International GmbH, Aalen, Germany.
6
7
C... | 2020 | Eye-tracking for low vision with virtual reality (VR): testing status quo usability of the HTC Vive Pro Eye | 10.1101/2020.07.29.220889 | [
"Sipatchin Alexandra",
"Wahl Siegfried",
"Rifai Katharina"
] | creative-commons |
1
Molecular mechanism of substrate recognition by
folate transporter SLC19A1
Authors:
Yu Dang1, Dong Zhou2, Xiaojuan Du3†, Hongtu Zhao4, Chia-Hsueh Lee4, Jing Yang3,
Changdong Qin5, Zhenxi Guo5, and Zhe Zhang1,2,3*
Affiliations:
1State Key Laboratory of Membrane Biology, Peking University-Tsinghua Univer... | 2022 | Molecular mechanism of substrate recognition by folate transporter SLC19A1 | 10.1101/2022.09.09.507238 | [
"Dang Yu",
"Zhou Dong",
"Du Xiaojuan",
"Zhao Hongtu",
"Lee Chia-Hsueh",
"Yang Jing",
"Qin Changdong",
"Guo Zhenxi",
"Zhang Zhe"
] | null |
Electrospun Ag-doped SnO2 hollow nanofibers with high
antibacterial activity
Yang Lia, Xiaoning Tanga*, Bin Zhangb, Huaming Maob
( a Faculty of Chemical Engineering, Kunming University of Science and Technology, Kunming 650500, Yunnan,
China; b Faculty of Science, Kunming University of Science and Technology, Kunmi... | 2019 | Electrospun Ag-doped SnO hollow nanofibers with high antibacterial activity | 10.1101/629030 | [
"Li Yang",
"Tang Xiaoning",
"Zhang Bin",
"Mao Huaming"
] | null |
1
Automatic subtyping of individuals with Primary Progressive Aphasia
Charalambos Themistocleous, Ph.D., Johns Hopkins School of Medicine, Baltimore, MD
21287, USA
Bronte Ficek, M.H.S, Johns Hopkins School of Medicine, Baltimore, MD 21287, USA
Kimberly Webster, M.A., M.S., Johns Hopkins School of Medicine, ... | 2020 | Automatic subtyping of individuals with Primary Progressive Aphasia | 10.1101/2020.04.04.025593 | [
"Themistocleous Charalambos",
"Ficek Bronte",
"Webster Kimberly",
"den Ouden Dirk-Bart",
"Hillis Argye E.",
"Tsapkini Kyrana"
] | null |
1
Sex-determining 3D regulatory hubs revealed by genome spatial auto-
1
correlation analysis
2
3
Irene Mota-Gómez1*, Juan Antonio Rodríguez2*@, Shannon Dupont3, Oscar Lao4, Johanna
4
Jedamzick1, Ralf Kuhn5, Scott Lacadie6, Sara Alexandra García-Moreno3$, Alicia Hurtado1,
5
Rafael D. Acemel1, Blanche Capel... | 2022 | Sex-determining 3D regulatory hubs revealed by genome spatial auto-correlation analysis | 10.1101/2022.11.18.516861 | [
"Mota-Gómez Irene",
"Rodríguez Juan Antonio",
"Dupont Shannon",
"Lao Oscar",
"Jedamzick Johanna",
"Kuhn Ralf",
"Lacadie Scott",
"García-Moreno Sara Alexandra",
"Hurtado Alicia",
"Acemel Rafael D.",
"Capel Blanche",
"Marti-Renom Marc A.",
"Lupiáñez Darío G."
] | creative-commons |
Role of Ring6 in the function of the E. coli MCE protein LetB
Casey Vieni1,2, Nicolas Coudray1,3, Georgia L. Isom1, Gira Bhabha1*, Damian C.
Ekiert1,2*
1. Skirball Institute of Biomolecular Medicine and Department of Cell Biology, New York University School of Medicine, New York, NY
2. Department of Microbiol... | 2021 | Role of Ring6 in the function of the MCE protein LetB | 10.1101/2021.09.30.462657 | [
"Vieni Casey",
"Coudray Nicolas",
"Isom Georgia L.",
"Bhabha Gira",
"Ekiert Damian C."
] | null |
1
Conservation genomic analysis reveals ancient introgression and declining levels of genetic diversity in
Madagascar's hibernating dwarf lemurs
Rachel C. Williams*
1,2, Marina B. Blanco
1,2†, Jelmer W. Poelstra
1†, Kelsie E. Hunnicutt
3, Aaron A.
Comeault
4,5, Anne D. Yoder
1,2
1 Department of Biology, Du... | 2019 | Conservation genomic analysis reveals ancient introgression and declining levels of genetic diversity in Madagascar’s hibernating dwarf lemurs | 10.1101/620724 | [
"Williams Rachel C.",
"Blanco Marina B.",
"Poelstra Jelmer W.",
"Hunnicutt Kelsie E.",
"Comeault Aaron A.",
"Yoder Anne D."
] | creative-commons |
1
TRAF4 inhibits bladder cancer progression by promoting
BMP/SMAD signalling pathway
Prasanna Vasudevan Iyengar1,2, Dieuwke Louise Marvin1,2, Dilraj Lama3,4, Tuan Zea Tan5,
Sudha Suriyamurthy1,2, Feng Xie6,7, Maarten van Dinther1,2, Hailiang Mei8, Chandra Shekhar
Verma4,9,10, Long Zhang6, Laila Ritsma1,2 and ... | 2020 | TRAF4 inhibits bladder cancer progression by promoting BMP/SMAD signalling pathway | 10.1101/2020.10.12.335588 | [
"Iyengar Prasanna Vasudevan",
"Marvin Dieuwke Louise",
"Lama Dilraj",
"Tan Tuan Zea",
"Suriyamurthy Sudha",
"Xie Feng",
"van Dinther Maarten",
"Mei Hailiang",
"Verma Chandra Shekhar",
"Zhang Long",
"Ritsma Laila",
"ten Dijke Peter"
] | null |
1
1
CXCL13 levels in cerebrospinal fluids of patients with multiple sclerosis: The role of
2
Borrelia proteins in neuro infections
3
Running title: CXCL13 levels in CSF of MS patients
4
5
Şeyda KARABÖRK,1 Şule AYDIN TÜRKOĞLU,2 Serpil YILDIZ,2 Fatma
6
SIRMATEL3
7
8
1Bolu Abant Izzet Baysal Universi... | 2023 | CXCL13 levels in cerebrospinal fluids of patients with multiple sclerosis: The role of Borrelia proteins in neuro infections | 10.1101/2023.01.05.522966 | [
"Karabörk Şeyda",
"Türkoğlu Şule Aydin",
"Yildiz Serpil",
"Sirmatel Fatma"
] | null |
Predicting the activation of the androgen receptor by mixtures of ligands using Generalized
Concentration Addition
Jennifer J Schlezinger, Wendy Heiger-Bernays, Thomas F Webster*
Department of Environmental Health, Boston University School of Public Health, 715 Albany
Street, Boston, MA 02118, USA
*Correspondi... | 2020 | Predicting the activation of the androgen receptor by mixtures of ligands using Generalized Concentration Addition | 10.1101/2020.05.02.074112 | [
"Schlezinger Jennifer J",
"Heiger-Bernays Wendy",
"Webster Thomas F"
] | creative-commons |
Mathematical framework for a place code in the
auditory system
Alex D. Reyes1
1Center for Neural Science, New York University, New York, NY, USA
Summary
In the auditory system, tonotopy is postulated to be the substrate for a place code, where sound
frequency is encoded by the location of the neurons that fire during th... | 2020 | Mathematical framework for a place code in the auditory system | 10.1101/2020.05.20.107417 | null | creative-commons |
Genome-wide co-essentiality analysis in Mycobacterium tuberculosis
reveals an itaconate defense enzyme module
Adrian Jinicha*, Sakila Z. Naziaa*, Andrea V. Tellez a, Amy M. Wua, Clare M. Smithb, Kyu Rheea#
a.
Division of Infectious Diseases, Weill Department of Medicine, Weill-Cornell Medical
College, New York, NY
b.
D... | 2022 | Genome-wide co-essentiality analysis in reveals an itaconate defense enzyme module | 10.1101/2022.09.27.509804 | [
"Jinich Adrian",
"Nazia Sakila Z.",
"Tellez Andrea V.",
"Wu Amy M.",
"Smith Clare M.",
"Rhee Kyu"
] | creative-commons |
Selective Display of a Chemoattractant Agonist on Cancer Cells
Activates the Formyl Peptide Receptor 1 on Immune Cells
Eden L. Sikorski1, Janessa Wehr1, Noel J. Ferraro2, Marcos M. Pires2, and Damien
Thévenin*1
1Department of Chemistry, Lehigh University, Bethlehem, Pennsylvania, USA
2Department of Chemistry, ... | 2021 | Selective Display of a Chemoattractant Agonist on Cancer Cells Activates the Formyl Peptide Receptor 1 on Immune Cells | 10.1101/2021.09.27.462035 | [
"Sikorski Eden L.",
"Wehr Janessa",
"Ferraro Noel J.",
"Pires Marcos M.",
"Thévenin Damien"
] | creative-commons |
1
1
RESEARCH ARTICLE
2
The ectomycorrhizal community of urban linden trees in
3
Gdańsk, Poland
4
5
Jacek Olchowik1*, Marzena Suchocka2, Paweł Jankowski3, Tadeusz Malewski4, Dorota Hilszczańska5
6
7
1 Department of Plant Protection, Institute of Horticultural Sciences; Warsaw University of Life Sciences, Warsaw, Polan... | 2020 | The ectomycorrhizal community of urban linden trees in Gdańsk, Poland | 10.1101/2020.07.30.228668 | [
"Olchowik Jacek",
"Suchocka Marzena",
"Jankowski Paweł",
"Malewski Tadeusz",
"Hilszczańska Dorota"
] | creative-commons |
Original Article
1
Integrative Analysis of Metabolomic and
2
Transcriptomic Profiles Uncovers Biological
3
Mechanism of Feed Efficiency in Pigs
4
Priyanka Banerjee, Victor Adriano Okstoft Carmelo, and Haja N Kadarmideen*
5
1Quantitative Genomics, Bioinformatics and Computational Biology Group, Department of... | 2020 | Integrative Analysis of Metabolomic and Transcriptomic Profiles Uncovers Biological Mechanism of Feed Efficiency in Pigs | 10.1101/2020.05.21.108050 | [
"Banerjee Priyanka",
"Okstoft Carmelo Victor Adriano",
"Kadarmideen Haja N"
] | null |
1
Title Page:
1
Glucocorticoids Unmask Silent Non-Coding Genetic Risk Variants for
2
Common Diseases
3
Authors:
4
Thanh Thanh Le Nguyen1†, Huanyao Gao1†, Duan Liu1†, Zhenqing Ye3,6, Jeong-Heon Lee2,
5
Geng-xian Shi2, Kaleigh Copenhaver1, Lingxin Zhang1, Lixuan Wei1, Jia Yu1, Cheng Zhang1, Hu
6
Li1, Liew... | 2022 | Glucocorticoids Unmask Silent Non-Coding Genetic Risk Variants for Common Diseases | 10.1101/2021.12.01.470787 | [
"Le Nguyen Thanh Thanh",
"Gao Huanyao",
"Liu Duan",
"Ye Zhenqing",
"Lee Jeong-Heon",
"Shi Geng-xian",
"Copenhaver Kaleigh",
"Zhang Lingxin",
"Wei Lixuan",
"Yu Jia",
"Zhang Cheng",
"Li Hu",
"Wang Liewei",
"Ordog Tamas",
"Weinshilboum Richard M."
] | creative-commons |
1
The amyloid concentric β-barrel hypothesis: Models of amyloid
beta 42 oligomers and annular protofibrils
Stewart R. Durell1, Rakez Kayed2, and H. Robert Guy3*
1 Laboratory of Cell Biology, Bldg. 37 Rm 2108, National Cancer Institute, National Institutes of
Health, Bethesda, MD 20892-4258, USA
2 UTMB Mitche... | 2021 | The amyloid concentric β-barrel hypothesis: Models of amyloid beta 42 oligomers and annular protofibrils | 10.1101/2021.08.03.454959 | [
"Durell Stewart R.",
"Kayed Rakez",
"Guy H. Robert"
] | creative-commons |
An Evaluation of Phylogenetic Workflows in Viral
Molecular Epidemiology
Colin Young1, Sarah Meng1, and Niema Moshiri1,*
1Department of Computer Science & Engineering, UC San Diego, La Jolla, CA, 92093, USA
*To whom correspondence should be addressed; niema@ucsd.edu
Abstract
The use of computati... | 2020 | An Evaluation of Phylogenetic Workflows in Viral Molecular Epidemiology | 10.1101/2020.11.24.396820 | [
"Young Colin",
"Meng Sarah",
"Moshiri Niema"
] | creative-commons |
1
Title: Dimethyl fumarate modulates the Duchenne muscular dystrophy disease program
following short-term treatment in mdx mice
Authors:
Cara A. Timpani*1,2,3, Stephanie Kourakis*1,2, Danielle A. Debruin1,3, Dean G. Campelj4, Nancy
Pompeani5, Narges Dargahi1, Angelo P. Bautista6, Ryan M. Bagaric1,2, Elya J. Ri... | 2022 | Dimethyl fumarate modulates the Duchenne muscular dystrophy disease program following short-term treatment in mice | 10.1101/2022.09.15.508124 | [
"Timpani Cara A.",
"Kourakis Stephanie",
"Debruin Danielle A.",
"Campelj Dean G.",
"Pompeani Nancy",
"Dargahi Narges",
"Bautista Angelo P.",
"Bagaric Ryan M.",
"Ritenis Elya J.",
"Sahakian Lauren",
"Hafner Patricia",
"Arthur Peter G.",
"Terrill Jessica R.",
"Apostolopoulos Vasso",
"de Ha... | creative-commons |
1
Gene-dependent yeast cell death pathway requires AP-3 vesicle trafficking leading to vacuole
membrane permeabilization
Zachary D. Stolp1, Madhura Kulkarni1, Yining Liu1, Chengzhang Zhu1, Alizay Jalisi1,2, Si Lin1,
Arturo Casadevall1, Kyle W. Cunningham2, Fernando J. Pineda1,3, Xinchen Teng4, J. Marie
Ha... | 2021 | Gene-dependent yeast cell death pathway requires AP-3 vesicle trafficking leading to vacuole membrane permeabilization | 10.1101/2021.08.02.454728 | [
"Stolp Zachary D.",
"Kulkarni Madhura",
"Liu Yining",
"Zhu Chengzhang",
"Jalisi Alizay",
"Lin Si",
"Casadevall Arturo",
"Cunningham Kyle W.",
"Pineda Fernando J.",
"Teng Xinchen",
"Hardwick J. Marie"
] | creative-commons |
| January 13, 2022 |
1
Speeded detection of spectrotemporal
modulations of sound
Lidwien C.E. Veugena, A. John van Opstala, and Marc M. van Wanrooija,1
a Department of Biophysics, Donders Institute for Brain, Cognition and Behavior, Radboud University
1 To whom correspondence should be addressed. E-mail... | 2022 | Speeded detection of spectrotemporal modulations of sound | 10.1101/2022.01.13.476175 | [
"Veugen Lidwien C.E.",
"van Opstal A. John",
"van Wanrooij Marc M."
] | null |
1
Chromokinesins NOD and KID Use Distinct ATPase Mechanisms
and Microtubule Interactions to Perform a Similar Function
Benjamin C. Walker†, Wolfram Tempel‡, Haizhong Zhu‡, Heewon Park§, Jared C. Cochran†*
†Department of Molecular & Cellular Biochemistry, Indiana University, Simon Hall Room 405C, 212 S.
Hawthorne... | 2019 | Chromokinesins NOD and KID Use Distinct ATPase Mechanisms and Microtubule Interactions to Perform a Similar Function | 10.1101/520460 | [
"Walker Benjamin C.",
"Tempel Wolfram",
"Zhu Haizhong",
"Park Heewon",
"Cochran Jared C."
] | creative-commons |
1
2
3
4
5
Multiple requirements for Rab GTPases in the development of
6
Drosophila tracheal dorsal branches and terminal cells
7
8
Benedikt T. Best1,2 (ORCID 0000-0001-6965-1117),
9
Maria Leptin1 (ORCID 0000-0001-7097-348X)
10
11
12
1 Director's Research Unit, European Molecular Biology... | 2019 | Multiple requirements for Rab GTPases in the development of tracheal dorsal branches and terminal cells | 10.1101/873232 | [
"Best Benedikt T.",
"Leptin Maria"
] | creative-commons |
1
Roles of lysosomotropic agents on LRRK2 activation and Rab10 phosphorylation
Tomoki Kuwaharaa,*, Kai Funakawaa, Tadayuki Komoria, Maria Sakuraia, Gen Yoshiia,
Tomoya Eguchia,b, Mitsunori Fukudac, Takeshi Iwatsubo a,*
a Department of Neuropathology, Graduate School of Medicine, The University of Tokyo,
Tok... | 2020 | Roles of lysosomotropic agents on LRRK2 activation and Rab10 phosphorylation | 10.1101/2020.08.25.267385 | [
"Kuwahara Tomoki",
"Funakawa Kai",
"Komori Tadayuki",
"Sakurai Maria",
"Yoshii Gen",
"Eguchi Tomoya",
"Fukuda Mitsunori",
"Iwatsubo Takeshi"
] | null |
1
Idea Paper: Effects of gonad type and body mass on the time required for sex change in fishes
1
2
Soma Tokunaga1,2, Tatsuru Kadota3, Yuuki Y. Watanabe2,4, Tetsuo Kuwamura5.6 and Yuuki
3
Kawabata1,7*
4
1Faculty of Fisheries, Nagasaki University, Bunkyo, Nagasaki 852-8521, Japan
5
2Department of Polar Sci... | 2021 | Idea Paper: Effects of gonad type and body mass on the time required for sex change in fishes | 10.1101/2021.08.29.458130 | [
"Tokunaga Soma",
"Kadota Tatsuru",
"Watanabe Yuuki Y.",
"Kuwamura Tetsuo",
"Kawabata Yuuki"
] | null |
1
21 April 2020
1
A flexible target-specific anti-infection therapeutic platform
2
that can be applied to different microbial species
3
Makoto Mitsunaga1*†, Kimihiro Ito1*, Takashi Nishimura1, Hironori Miyata2, Yoshimitsu
4
Mizunoe3, Hisataka Kobayashi4, Tadayuki Iwase3,5†
5
1 Division of Gastroenter... | 2020 | A flexible target-specific anti-infection therapeutic platform that can be applied to different microbial species | 10.1101/2020.04.20.049791 | [
"Mitsunaga Makoto",
"Ito Kimihiro",
"Nishimura Takashi",
"Miyata Hironori",
"Mizunoe Yoshimitsu",
"Kobayashi Hisataka",
"Iwase Tadayuki"
] | null |
1
The Atypical Cyclin-Like Protein Spy1 Overrides p53-Mediated Tumour
Suppression and Promotes Susceptibility to Breast Tumorigenesis
Bre-Anne Fifield1, Ingrid Qemo1, Evie Kirou1, Robert D. Cardiff2 and Lisa Ann Porter1*
*Corresponding author
1Department of Biological Sciences
University of... | 2019 | The Atypical Cyclin-Like Protein Spy1 Overrides p53-Mediated Tumour Suppression and Promotes Susceptibility to Breast Tumorigenesis | 10.1101/535310 | [
"Fifield Bre-Anne",
"Qemo Ingrid",
"Kirou Evie",
"Cardiff Robert D.",
"Porter Lisa Ann"
] | creative-commons |
1
Genome-scale mapping reveals complex regulatory activities of RpoN in Yersinia
pseudotuberculosis
Running Tittle: RpoN regulation in Yersinia pseudotuberculosis
F.A.K.M. Mahmud 1, K. Nilsson 1, A. Fahlgren 1, R.Navais 1 ,R. Choudhry 1, K. Avican 1, and
M. Fallman 1
1Department of Molecula... | 2020 | Genome-scale mapping reveals complex regulatory activities of RpoN in | 10.1101/2020.08.19.258541 | [
"Mahmud F.A.K.M.",
"Nilsson K.",
"Fahlgren A.",
"Navais R.",
"Choudhry R.",
"Avican K.",
"Fallman M."
] | creative-commons |
Environmental DNA metabarcoding provides enhanced detection of
1
the European eel Anguilla anguilla and fish community structure in
2
pumped river catchments
3
Nathan P. Griffiths1,2 | Jonathan D. Bolland2 | Rosalind M. Wright3 |
4
Leona A. Murphy2 | Robert K. Donnelly1 | Hayley V. Watson1 | Bernd Hänfling1
5... | 2020 | Environmental DNA metabarcoding provides enhanced detection of the European eel and fish community structure in pumped river catchments | 10.1101/2020.07.22.216523 | [
"Griffiths Nathan P.",
"Bolland Jonathan D.",
"Wright Rosalind M.",
"Murphy Leona A.",
"Donnelly Robert K.",
"Watson Hayley V.",
"Hänfling Bernd"
] | creative-commons |
1
Title
An automated workflow for label-free and multiplexed single cell
proteomics sample preparation at unprecedented sensitivity.
Authors
David Hartlmayr1,*, Claudia Ctortecka1,*,§, Anjali Seth4, Sasha Mendjan2, Guilhem Tourniaire4 and Karl
Mechtler1,2,3,§
* these authors contributed equally to this work.
... | 2021 | An automated workflow for label-free and multiplexed single cell proteomics sample preparation at unprecedented sensitivity | 10.1101/2021.04.14.439828 | [
"Hartlmayr David",
"Ctortecka Claudia",
"Seth Anjali",
"Mendjan Sasha",
"Tourniaire Guilhem",
"Mechtler Karl"
] | null |
1
Biosynthesis of Steroidal Alkaloids Are Coordinately Regulated and Differ Among
1
Tomatoes in the Red-Fruited Clade
2
3
Michael P. Dzakovich1, David M. Francis2, and Jessica L. Cooperstone1,3*
4
5
1Department of Horticulture and Crop Science, The Ohio State University, 2001 Fyffe
6
Court, Columbus,... | 2021 | Biosynthesis of Steroidal Alkaloids Are Coordinately Regulated and Differ Among Tomatoes in the Red-Fruited Clade | 10.1101/2021.01.06.425594 | [
"Dzakovich Michael P.",
"Francis David M.",
"Cooperstone Jessica L."
] | creative-commons |
1
Multiple links between 5-methylcytosine content of mRNA and translation
Ulrike Schumann1,#, He-Na Zhang2,#, Tennille Sibbritt1, Anyu Pan1, Attila Horvath1, Simon
Gross1, Susan J Clark3,4, Li Yang2,5 and Thomas Preiss1,6*
1 EMBL–Australia Collaborating Group, John Curtin School of Medical Resea... | 2020 | Multiple links between 5-methylcytosine content of mRNA and translation | 10.1101/2020.02.04.933499 | [
"Schumann Ulrike",
"Zhang He-Na",
"Sibbritt Tennille",
"Pan Anyu",
"Horvath Attila",
"Gross Simon",
"Clark Susan J",
"Yang Li",
"Preiss Thomas"
] | null |
1
Comparative infectivity and pathogenesis of emerging SARS-CoV-2 variants in Syrian
1
hamsters
2
3
4
Rana Abdelnabi1,7#, Robbert Boudewijns1,2,7#, Caroline S. Foo1,7#, Laura Seldeslachts3, Lorena
5
Sanchez-Felipe1,2,7, Xin Zhang1,7, Leen Delang1,7, Piet Maes4,5, Suzanne J. F. Kaptein1,7, Birgit
6
Weyn... | 2021 | Comparative infectivity and pathogenesis of emerging SARS-CoV-2 variants in Syrian hamsters | 10.1101/2021.02.26.433062 | [
"Abdelnabi Rana",
"Boudewijns Robbert",
"Foo Caroline S.",
"Seldeslachts Laura",
"Sanchez-Felipe Lorena",
"Zhang Xin",
"Delang Leen",
"Maes Piet",
"Kaptein Suzanne J. F.",
"Weynand Birgit",
"Velde Greetje Vande",
"Neyts Johan",
"Dallmeier Kai"
] | null |
1
2
Changes in DNA double-strand break repair during aging correlate with an
3
increase in genomic mutations.
4
5
Aditya Mojumdar1,2,†, Nicola Mair1,†, and Nancy Adam, and Jennifer A. Cobb1,2,*
6
7
8
1 Departments of Biochemistry & Molecular Biology and Oncology, Robson DNA Science Centre,
9
A... | 2022 | Changes in DNA double-strand break repair during aging correlate with an increase in genomic mutations | 10.1101/2022.02.04.479125 | [
"Mojumdar Aditya",
"Mair Nicola",
"Adam Nancy",
"Cobb Jennifer A."
] | creative-commons |
Prediction and preview strongly affect reading times but not skipping
during natural reading
Micha Heilbron1,2 , Jorie van Haren1, Peter Hagoort1,2, Floris P. de Lange1
1Donders Institute, Radboud University, Nijmegen, the Netherlands
2Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands
micha.heilbron@... | 2022 | Prediction and preview strongly affect reading times but not skipping during natural reading | 10.1101/2021.10.06.463362 | [
"Heilbron Micha",
"van Haren Jorie",
"Hagoort Peter",
"de Lange Floris P."
] | creative-commons |
Agreement between different linear-combination modelling algorithms for
1
short-TE proton spectra
2
Helge J. Zöllner1,2,*, Michal Považan1,2, Steve C. N. Hui1,2, Sofie Tapper1,2, Richard A. E. Ed-
3
den1,2, Georg Oeltzschner1,2
4
1 Russell H. Morgan Department of Radiology and Radiological Science, The Johns H... | 2020 | Agreement between different linear-combination modelling algorithms for short-TE proton spectra | 10.1101/2020.06.05.136796 | [
"Zöllner Helge J.",
"Považan Michal",
"Hui Steve C. N.",
"Tapper Sofie",
"Edden Richard A. E.",
"Oeltzschner Georg"
] | creative-commons |
1
Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA
1
polymerase
2
3
4
Rishi K. Vishwakarma1, M. Zuhaib Qayyum1,3, Paul Babitzke1,4, and Katsuhiko S. Murakami1,2,4
5
6
1Department of Biochemistry and Molecular Biology, Center for RNA Molecular Biology,
7
Pennsylvania ... | 2022 | Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase | 10.1101/2022.10.28.514324 | [
"Vishwakarma Rishi K.",
"Qayyum M. Zuhaib",
"Babitzke Paul",
"Murakami Katsuhiko S."
] | creative-commons |
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