pdb_code stringlengths 4 4 | release_date stringdate 1991-10-15 00:00:00 2026-01-28 00:00:00 | classification stringclasses 1
value | chains stringlengths 61 5.01k | formula_weight float64 387 271k | symmetry stringclasses 66
values | crystal_structure(a|b|c|alpha|beta|gamma) stringlengths 5 45 | exptl_method stringclasses 6
values | synthesis_comment stringclasses 73
values | authors stringlengths 7 521 ⌀ | publication stringlengths 15 254 | publication_ref(doi|pubmed|csd|issn|astm) stringlengths 4 62 | publication_country stringclasses 9
values | subtitle stringlengths 6 213 | tags stringlengths 9 287 | sequence_related_designs_above_50_bits stringlengths 8 1.39k ⌀ | sequence_related_natural_proteins_above_50_bits stringlengths 8 115k ⌀ | structure_related_designs_above_95_lddt stringlengths 7 1.13k ⌀ | structure_related_natural_above_95_lddt stringclasses 247
values | highest_sequence_related_design stringlengths 7 10 ⌀ | highest_sequence_related_natural_protein stringlengths 8 10 ⌀ | highest_structure_related_design stringlengths 7 18 ⌀ | highest_structure_related_natural_protein stringlengths 7 18 ⌀ | cath_full stringlengths 9 3.45k ⌀ | data_curation_comments stringclasses 3
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
6v5j | 2020-04-29 | other | id:A,B;type:U;source:unknown;length:34;seq_nat:XEVEALEKKVEALELKVQALEKKVEALEHGWDGR;seq_unnat:(ACE)EVEALEKKVEALELKVQALEKKVEALEHGWDGR | 3,808.356 | H 3 | 38.041|38.041|104.276|90.000|90.000|120.000 | X-RAY DIFFRACTION | null | K.L. Stern;M.S. Smith;W.M. Billings;T.J. Loftus;B.M. Conover;D. Della Corte;J.L. Price | "Context-Dependent Stabilizing Interactions among Solvent-Exposed Residues along the Surface of a Trimeric Helix Bundle", Biochemistry, 59, 1672-1679 | 10.1021/acs.biochem.0c00045|32270676|0033|0006-2960|BICHAW | US | Coiled-coil trimer with glu:leu:ala triad | helix;de novo protein;trimer | null | null | 6v5i(1);6osd(1);6q1w(1);6v57(1);6v5g(1);6v58(0.9973000288);6q22(0.9767000079);6q25(0.9778000116);5uxt(0.9726999998);6ov9(1);6u47(0.977699995);6ovs(0.969900012);6ovv(0.9638000131) | null | 6v5j(0) | null | 6v5i(1) | null | 6.10.250.770;1.20.5.420;6.10.250.2070;6.10.250.810;1.20.5.770;1.20.5.1450;1.20.5.700;6.10.250.2150;6.10.250.200;6.10.250.2720;6.10.250.2060;6.10.250.1090;6.10.250.2370;6.10.250.1020;6.10.250.1440;1.20.5.1610;6.10.250.80;6.10.250.850;6.10.250.380;6.10.250.2230;1.20.5.110;1.20.5.250;1.20.5.460;6.10.250.1920;6.10.250.450;... | null |
6v67 | 2020-12-09 | other | id:A,B;type:D;source:synthetic construct;length:43;seq_nat:GSCFCVCITGPQWDYRYGNKEQCKKFLTECEQKNPGAEVEIQC;seq_unnat:GSCFCVCITGPQWDYRYGNKEQCKKFLTECEQKNPGAEVEIQC | 4,939.602 | C 1 2 1 | 50.849|26.744|51.537|90.000|99.670|90.000 | X-RAY DIFFRACTION | null | C.M. Bryan;G.J. Rocklin;M.J. Bick;A. Ford;S. Majri-Morrison;A.V. Kroll;C.J. Miller;L. Carter;I. Goreshnik;A. Kang;F. DiMaio;K.V. Tarbell;D. Baker | "Computational design of a synthetic PD-1 agonist", Proc.Natl.Acad.Sci.USA, 118 | 10.1073/pnas.2102164118|34272285|0040|1091-6490|PNASA6 | US | Apo structure of the de novo pd-1 binding miniprotein gr918.2 | pd-1;binder;disulfide miniprotein;computational design;de novo protein | null | null | null | null | 6v67(0) | null | 7lmx(0.6901999712) | 2jve(0.6614999771) | 3.30.160.330;3.30.160.60 | null |
6v8e | 2020-08-12 | other | id:A,B,C,D,E,F;type:D;source:synthetic construct;length:120;seq_nat:EEAELAYLLGELAYKLGEYRIAIRAYRIALKRDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG;seq_unnat:EEAELAYLLGELAYKLGEYRIAIRAYRIALKRDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG | 13,807.026 | P 1 21 1 | 69.470|64.910|99.030|90.00|106.33|90.00 | X-RAY DIFFRACTION | null | G. Ueda;A. Antanasijevic;J.A. Fallas;W. Sheffler;J. Copps;D. Ellis;G.B. Hutchinson;A. Moyer;A. Yasmeen;Y. Tsybovsky;Y.J. Park;M.J. Bick;B. Sankaran;R.A. Gillespie;P.J. Brouwer;P.H. Zwart;D. Veesler;M. Kanekiyo;B.S. Graham;R.W. Sanders;J.P. Moore;P.J. Klasse;A.B. Ward;N.P. King;D. Baker | "Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens", Elife, 9 | 10.7554/eLife.57659|32748788||2050-084X| | US | Computationally designed c3-symmetric homotrimer from tpr repeat protein | designed nanoparticles;de novo protein;ribosome-binding site;designed trimers | 6vfh(231);6vfk(230);6vfi(228);6vfj(219);6vl6(216);5hrz(202);8fwd(180);8umr(154);8ump(154) | null | 6vfh(0.9735999703);6vfk(0.9656000137);5hrz(0.9804999828);2hyz(0.9688000083);8cqq(0.9559999704);8cqp(0.9607999921);8ump(0.9789999723);8cig(0.9509999752);8bu0(0.9585999846);8chy(0.954400003) | null | 6vfh(231) | null | 5hrz(0.9804999828) | 2vyi(0.929700017) | 1.10.10.10;1.20.5.420;1.20.58.290;6.10.140.730;1.10.287.1100;1.20.58.2200;1.20.5.2020;1.25.40.1040;1.25.40.850;1.25.40.440;1.10.10.2400;1.20.58.80;1.25.40.970;1.25.40.10;6.10.250.3030;1.10.1240.70;1.10.10.1270;1.10.220.10;1.20.58.770;6.10.140.270 | null |
6veh | 2020-08-05 | other | id:A;type:D;source:synthetic construct;length:198;seq_nat:MTDPMKVILYIAMLELEKYIMRAAAAYALGKIGDERAVEPLIKALKDEDAIVRAAAADALGQIGDERAVEPLIKALKDEDGAVRVSAAVALGQIGDERAVEPLIKALKDEDAVVRVAAAIALGLIGDERAVEPLIKALKDEKGKVREAAALALGAIGGERVRAAMEKLAETGTGFARKVAVNYLETHKLEHHHHHH;seq_unnat:(FME)TDPMKVILYIAMLELEKYIMRAAAAYALGKIGDERAVEPLIKALKDEDAI... | 21,022.387 | H 3 | 88.182|88.182|65.244|90.000|90.000|120.000 | X-RAY DIFFRACTION | null | G. Ueda;A. Antanasijevic;J.A. Fallas;W. Sheffler;J. Copps;D. Ellis;G.B. Hutchinson;A. Moyer;A. Yasmeen;Y. Tsybovsky;Y.J. Park;M.J. Bick;B. Sankaran;R.A. Gillespie;P.J. Brouwer;P.H. Zwart;D. Veesler;M. Kanekiyo;B.S. Graham;R.W. Sanders;J.P. Moore;P.J. Klasse;A.B. Ward;N.P. King;D. Baker | "Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens", Elife, 9 | 10.7554/eLife.57659|32748788||2050-084X| | US | Computationally designed c3-symmetric homotrimer from heat repeat protein | designed protein;de novo protein;vaccine | 3ltm(303);3ltj(297);4jw2(297);4zv6(254);6bzx(254);4jw3(178) | 6ft5(296);6fsq(295);6hwp(295);6gx7(262);6gwc(256);4xl5(252);5dcq(227);4xvp(220);6gwd(218);6g4j(171);1te4(131);5n3u(63);4d4z(53);4d50(53) | 3ltj(0.9600999951);4zv6(0.9548000097) | 4xl5(0.9553999901) | 3ltm(303) | 6ft5(296) | 3ltj(0.9600999951) | 4xl5(0.9553999901) | null | null |
6vfh | 2020-08-12 | other | id:A;type:D;source:synthetic construct;length:122;seq_nat:MGEEAELAYLLGELAYKLGEYRIAIRAYRIALKRDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYEKALELDPENLEALQNLLNAMDKQG;seq_unnat:MGEEAELAYLLGELAYKLGEYRIAIRAYRIALKRDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYEKALELDPENLEALQNLLNAMDKQG|id:B;typ... | 14,082.408 | null | ||||| | ELECTRON MICROSCOPY | null | G. Ueda;A. Antanasijevic;J.A. Fallas;W. Sheffler;J. Copps;D. Ellis;G.B. Hutchinson;A. Moyer;A. Yasmeen;Y. Tsybovsky;Y.J. Park;M.J. Bick;B. Sankaran;R.A. Gillespie;P.J. Brouwer;P.H. Zwart;D. Veesler;M. Kanekiyo;B.S. Graham;R.W. Sanders;J.P. Moore;P.J. Klasse;A.B. Ward;N.P. King;D. Baker | "Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens", Elife, 9 | 10.7554/eLife.57659|32748788||2050-084X| | US | De novo designed tetrahedral nanoparticle t33_dn10 | de novo;de novo protein;nanoparticle | 6vfk(497);6v8e(230);6vfi(229);6vfj(216);6vl6(200);5hrz(186);8fwd(172);8umr(146);8ump(146);5k7v(471) | 3vtx(74);3vty(74) | 6vfk(0.9872999787);6v8e(0.9743000269);5hrz(0.9779999852);8ump(0.9600999951) | null | 6vfk(497) | 3vtx(74) | 6vfk(0.9872999787) | 1w3b(0.899699986) | 1.20.5.420;1.20.58.740;1.20.58.60;6.10.140.730;1.20.120.360;1.25.40.90;1.20.1440.70;1.20.1050.10;1.25.40.240;1.20.120.30;1.20.58.2200;1.20.58.150;1.20.1310.30;1.20.1440.210;1.20.58.1320;1.25.40.1040;1.25.10.30;1.25.40.850;1.20.58.1440;1.20.58.830;1.20.1440.60;1.25.40.440;1.20.58.420;1.20.58.80;1.20.140.70;1.10.357.100;... | null |
6vfi | 2020-08-12 | other | id:B;type:D;source:synthetic construct;length:122;seq_nat:MGEEAELAYLLGELAYKLGEYRIAIRAYRIALKRDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPSNLDAAVNLGAATMLTS;seq_unnat:MGEEAELAYLLGELAYKLGEYRIAIRAYRIALKRDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPSNLDAAVNLGAATMLTS|id:A;typ... | 13,828.147 | null | ||||| | ELECTRON MICROSCOPY | null | G. Ueda;A. Antanasijevic;J.A. Fallas;W. Sheffler;J. Copps;D. Ellis;G.B. Hutchinson;A. Moyer;A. Yasmeen;Y. Tsybovsky;Y.J. Park;M.J. Bick;B. Sankaran;R.A. Gillespie;P.J. Brouwer;P.H. Zwart;D. Veesler;M. Kanekiyo;B.S. Graham;R.W. Sanders;J.P. Moore;P.J. Klasse;A.B. Ward;N.P. King;D. Baker | "Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens", Elife, 9 | 10.7554/eLife.57659|32748788||2050-084X| | US | De novo designed octahedral nanoparticle o43_dn18 | de novo;de novo protein;nanoparticle | 5cwb(288);7mwr(261);8cwy(251);8cws(247);6vfh(226);6v8e(225);6vfk(223);6vfj(209);6vl6(194);5hrz(180);8fwd(178);8umr(147);8ump(147) | 3vtx(73);3vty(73);9drl(218);6w2q(109) | null | null | 5cwb(288) | 9drl(218) | 6v8e(0.9280999899) | 2vyi(0.8690999746) | 1.25.40.970;1.25.40.10;1.25.40.440 | null |
6vfj | 2020-08-12 | other | id:B;type:D;source:synthetic construct;length:129;seq_nat:MEEAELAYLLGELAYKLGEYRIAIRAYRIALKRDPNNAEAWYNLGNAYYKQGRYREAIEYYQKALELDPNNAEAWYNLGNAYYERGEYEEAIEYYRKALRLDPNNADAMQNLLNAKMREELEHHHHHH;seq_unnat:MEEAELAYLLGELAYKLGEYRIAIRAYRIALKRDPNNAEAWYNLGNAYYKQGRYREAIEYYQKALELDPNNAEAWYNLGNAYYERGEYEEAIEYYRKALRLDPNNADAMQNLLNAKMREELEH... | 15,356.009 | null | ||||| | ELECTRON MICROSCOPY | null | G. Ueda;A. Antanasijevic;J.A. Fallas;W. Sheffler;J. Copps;D. Ellis;G.B. Hutchinson;A. Moyer;A. Yasmeen;Y. Tsybovsky;Y.J. Park;M.J. Bick;B. Sankaran;R.A. Gillespie;P.J. Brouwer;P.H. Zwart;D. Veesler;M. Kanekiyo;B.S. Graham;R.W. Sanders;J.P. Moore;P.J. Klasse;A.B. Ward;N.P. King;D. Baker | "Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens", Elife, 9 | 10.7554/eLife.57659|32748788||2050-084X| | US | De novo designed icosahedral nanoparticle i53_dn5 | de novo;de novo protein;nanoparticle | 6v8e(216);6vfh(214);6vl6(213);6vfk(213);6vfi(211);5hrz(192);8fwd(165);8umr(146);8ump(146) | 5im4(309);2jfb(305);4kq6(235);1ejb(227);1c41(169);1kz6(153);1kz9(153);1kz4(150);1kyv(150);1kyx(150);1kyy(150);2a57(146);2a58(146);2a59(146);1kz1(144);4v7g(103);1nqx(103);5mpp(103);1hqk(103);1nqu(103);1nqv(103);1nqw(103);1rvv(101);1zis(101);5mq3(96);5mq7(87);3mk3(79);3nq4(79);1c2y(77);1w19(75);2c9b(75);2vi5(75);2c92(75)... | null | null | 6v8e(216) | 5im4(309) | 6v8e(0.9393000007) | 2jfb(0.9404000044) | 1.25.40.440;1.20.58.2200;1.25.40.10;6.10.140.270;1.25.40.1040;1.10.10.1270 | null |
6vfk | 2020-07-22 | other | id:B;type:D;source:synthetic construct;length:291;seq_nat:MIEEVVAEMIDILAESSKKSIEELARAADNKTTEKAVAEAIEEIARLATAAIQLIEALAKNLASEEFMARAISAIAELAKKAIEAIYRLADNHTTDTFMARAIAAIANLAVTAILAIAALASNHTTEEFMARAISAIAELAKKAIEAIYRLADNHTTDKFMAAAIEAIALLATLAILAIALLASNHTTEKFMARAIMAIAILAAKAIEAIYRLADNHTSPTYIEKAIEAIEKIARKAIKAIEMLAKNITTEEYKEKAKKIID... | 31,466.83 | null | ||||| | ELECTRON MICROSCOPY | null | A. Antanasijevic;G. Ueda;P.J.M. Brouwer;J. Copps;D. Huang;J.D. Allen;C.A. Cottrell;A. Yasmeen;L.M. Sewall;I. Bontjer;T.J. Ketas;H.L. Turner;Z.T. Berndsen;D.C. Montefiori;P.J. Klasse;M. Crispin;D. Nemazee;J.P. Moore;R.W. Sanders;N.P. King;D. Baker;A.B. Ward | "Structural and functional evaluation of de novo-designed, two-component nanoparticle carriers for HIV Env trimer immunogens", Plos Pathog., 16, e1008665-e1008665 | 10.1371/journal.ppat.1008665|32780770||1553-7374| | US | De novo designed tetrahedral nanoparticle t33_dn10 displaying 4 copies of bg505-sosip trimer on the surface | nanoparticle;de novo protein design;hiv env;rosetta;de novo protein | 6vfl(1069);6vl5(1066);6vfh(497);6v8e(230);6vfi(228);6vfj(216);6vl6(200);5hrz(186);8fwd(172);8umr(146);8ump(146);4dzv(96);4dzu(96);5k7v(471) | 6p6f(1347);6b0n(1229);6p62(1223);9ays(1069);9ay6(1069);9axd(1069);9evz(1048);6pw6(1048);9f02(1048);6pwu(1036);9ehl(1011);9ehm(1011);6mzj(1002);6myy(1002);9cu5(1001);9cu6(1001);6vo1(986);6vlr(986);6vo0(986);6v0r(984);6vn0(981);6did(981);5thr(981);5v8l(981);5i8h(981);6u0l(981);4zmj(981);5u7o(981);5viy(981);5t3x(981);6cm3... | 6vfh(0.9779000282);6v8e(0.9606999755);5hrz(0.9642000198) | null | 6vfl(1069) | 6p6f(1347) | 6vfh(0.9779000282) | 2vyi(0.9136000276) | 1.20.5.420;1.20.58.290;1.20.58.740;1.20.58.60;6.10.140.730;1.20.120.400;1.25.40.90;1.20.1440.70;1.20.1050.10;1.25.40.240;1.20.58.1150;1.20.58.2200;1.20.58.150;1.20.1310.30;1.20.1440.210;1.20.970.20;1.25.40.1040;1.20.58.1440;1.25.40.850;1.25.10.30;1.20.1440.60;1.25.40.440;1.10.10.2400;1.20.58.420;1.20.58.80;1.20.140.70;... | null |
6vfl | 2020-07-22 | other | id:A,C,E;type:D;source:synthetic construct;length:513;seq_nat:MKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAENLWVTVYYGVPVWKDAETTLFCASDAKAYETKKHNVWATHCCVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCTNVSTVQCTHGIKPVVS... | 56,863.668 | null | ||||| | ELECTRON MICROSCOPY | null | A. Antanasijevic;G. Ueda;P.J.M. Brouwer;J. Copps;D. Huang;J.D. Allen;C.A. Cottrell;A. Yasmeen;L.M. Sewall;I. Bontjer;T.J. Ketas;H.L. Turner;Z.T. Berndsen;D.C. Montefiori;P.J. Klasse;M. Crispin;D. Nemazee;J.P. Moore;R.W. Sanders;N.P. King;D. Baker;A.B. Ward | "Structural and functional evaluation of de novo-designed, two-component nanoparticle carriers for HIV Env trimer immunogens", Plos Pathog., 16, e1008665-e1008665 | 10.1371/journal.ppat.1008665|32780770||1553-7374| | US | Bg505-sosip model reconstructed by subparticle extraction and refinement from a tetrahedral nanoparticle t33_dn10 | nanoparticle;de novo protein design;hiv env;rosetta;de novo protein | 6vfk(1068);6vl5(1066);4dzv(95);4dzu(95) | 9ays(1062);9ay6(1062);9axd(1062);6p6f(1052);9evz(1041);6pw6(1041);9f02(1041);9ehl(1004);9ehm(1004);6vo1(986);6vlr(986);6vo0(986);6v0r(984);6vn0(981);6dfg(977);5c7k(977);4nco(975);3j5m(975);6ozc(975);6opa(975);6mn7(974);5aco(974);6did(974);5thr(974);5v8l(974);5i8h(974);6u0l(974);4zmj(974);5u7o(974);5viy(974);5t3x(974);6... | 6vl5(0.9534999728) | null | 6vfk(1068) | 9ays(1062) | 6vl5(0.9534999728) | 6nf5(0.9298999906) | 1.10.287.540;1.20.5.510;1.10.287.2620;6.10.140.1300;1.10.12.10;2.30.30.140;2.30.30.30;1.10.20.10;1.20.5.170;2.40.50.140;2.30.30.360;1.10.287.3280 | null |
6vg7 | 2020-08-19 | other | id:A;type:D;source:synthetic construct;length:125;seq_nat:MGSSHHHHHHSSGLVPRGSHMTLFVLILSNDKKLIEEARKMAEKANLILITVGDEEELKKAIKKADDIAKKQNSSEAKILILLEKPVSPEYEKKLQKYADAEVRVRTVTSPDEAKRWIKEFSEE;seq_unnat:MGSSHHHHHHSSGLVPRGSHMTLFVLILSNDKKLIEEARKMAEKANLILITVGDEEELKKAIKKADDIAKKQNSSEAKILILLEKPVSPEYEKKLQKYADAEVRVRTVTSPDEAKRWIKEFSEE | 14,153.302 | P 1 | 1.000|1.000|1.000|90.00|90.00|90.00 | SOLUTION NMR | null | X. Pan;M.C. Thompson;Y. Zhang;L. Liu;J.S. Fraser;M.J.S. Kelly;T. Kortemme | "Expanding the space of protein geometries by computational design of de novo fold families", Science, 369, 1132-1136 | 10.1126/science.abc0881|32855341|0038|1095-9203|SCIEAS | US | De novo designed rossmann fold protein ros2_49223 | de novo protein;rossmann fold | 6vga(145);6vgb(139);2lv8(95);2kpo(95);6tj1(53);7m0q(52);6y07(52);8qad(52);9rgx(51);9rgv(51);9rgz(51);9rgy(51);9rgw(51);8w06(51);8v09(51);8v2w(51);8w05(51);8qaf(50);8w08(50);8v0a(50) | 4omm(59);4muz(59);4n2y(59);4omp(58);4omn(58);4oml(58);4lui(58);4luj(58);3nd1(58);5fd4(58);4omq(57);1x9a(57);3l9b(57);2iss(57);4aaj(57);2ho1(57);4nye(57);4fe2(57);4fgr(57);5caj(57);3c1y(57);4yvz(57);3c1z(57);4yxm(57);3c21(57);3c23(57);4yxj(57);6eqz(57);5mm3(57);5e7u(57);5i69(57);6n84(57);6n85(57);3ssq(56);6lyw(56);6lyx(... | null | null | 6vga(145) | 4omm(59) | 2kpo(0.7254999876) | 4ckw(0.564899981) | 3.40.50.790 | null |
6vga | 2020-08-19 | other | id:A;type:D;source:synthetic construct;length:126;seq_nat:MGSSHHHHHHSSGLVPRGSHMRLVVLIVSNDKKLIEEARKMAEKANLELITVPGSPEEAIRLAQEIAEKAPGPVKVLVLITGSADPDEKTKAKKAAEEARKWNVRVRTVTSPDEAKRWIKEFSEE;seq_unnat:MGSSHHHHHHSSGLVPRGSHMRLVVLIVSNDKKLIEEARKMAEKANLELITVPGSPEEAIRLAQEIAEKAPGPVKVLVLITGSADPDEKTKAKKAAEEARKWNVRVRTVTSPDEAKRWIKEFSEE | 13,925.99 | P 1 | 1.000|1.000|1.000|90.00|90.00|90.00 | SOLUTION NMR | null | X. Pan;M.C. Thompson;Y. Zhang;L. Liu;J.S. Fraser;M.J.S. Kelly;T. Kortemme | "Expanding the space of protein geometries by computational design of de novo fold families", Science, 369, 1132-1136 | 10.1126/science.abc0881|32855341|0038|1095-9203|SCIEAS | US | De novo designed rossmann fold protein ros2_835 | de novo protein;rossmann fold | 6vg7(142);6vgb(141);2lv8(88);2kpo(88);7m0q(55);8qad(53);8w08(53);8v0a(53);7k3h(52);9rgx(51);9rgv(51);9rgz(51);9rgy(51);9rgw(51);6y07(51);8w06(51);8w05(51);8qaf(50);7zp7(50) | 4xrw(63);2qra(61);6lua(61);6luf(61);4muz(60);4n2y(60);3la7(59);3la2(59);3la3(59);3qc1(59);4mtz(58);6gjw(58);6qci(58);4oxc(58);4kp2(58);4wk1(57);4wk3(57);2znz(57);1ri7(57);2e1c(57);2zny(57);2iss(57);6a4t(57);2q16(57);2pyu(57);4aaj(57);4oxn(57);4oyr(57);5mtq(57);5mtr(57);5ugs(57);4ohu(57);5cp8(57);4oxy(57);5ugt(57);4oim(... | null | null | 6vg7(142) | 4xrw(63) | 2lv8(0.7063000202) | 3hzh(0.5507000089) | 3.30.110.140;3.30.2320.10;3.40.50.300;4.10.800.30;3.40.50.10670;3.40.50.1980 | null |
6vgb | 2020-08-19 | other | id:A;type:D;source:synthetic construct;length:122;seq_nat:MGSSHHHHHHSSGLVPRGSHMGLLVLIWSNDKKLIEEARKMAEKANLYLLTLETDDKKIEDILKSLGPPVKILVLLEDTKDADKVKKEIEKKARKKNLPVRIRKVTSPDEAKRWIKEFSEE;seq_unnat:MGSSHHHHHHSSGLVPRGSHMGLLVLIWSNDKKLIEEARKMAEKANLYLLTLETDDKKIEDILKSLGPPVKILVLLEDTKDADKVKKEIEKKARKKNLPVRIRKVTSPDEAKRWIKEFSEE | 13,953.312 | P 1 | 1.000|1.000|1.000|90.00|90.00|90.00 | SOLUTION NMR | null | X. Pan;M.C. Thompson;Y. Zhang;L. Liu;J.S. Fraser;M.J.S. Kelly;T. Kortemme | "Expanding the space of protein geometries by computational design of de novo fold families", Science, 369, 1132-1136 | 10.1126/science.abc0881|32855341|0038|1095-9203|SCIEAS | US | De novo designed rossmann fold protein ros2_36830 | de novo protein;rossmann fold | 6vga(140);6vg7(135);2lv8(93);2kpo(93);7m0q(55);8w06(54);8w05(54);8qad(53);8qae(53);8w08(53);8v0a(53);8v2x(52);6tj1(51);8v09(51);8v2w(51);9rgx(50);9rgv(50);9rgz(50);9rgy(50);9rgw(50) | 3c1y(59);4yvz(59);3c1z(59);4yxm(59);3c21(59);3c23(59);4yxj(59);1x9a(58);4lui(58);4luj(58);4e7o(57);4e7p(57);4muz(57);4n2y(57);5fd4(57);3obw(57);6eqz(57);5mm3(57);5e7u(57);5i69(57);6n84(57);6n85(57);2p32(56);2i39(56);2iss(56);3nd1(56);3rde(56);5apo(56);5apn(56);1ry2(56);2jyl(55);2cz4(55);5zrt(55);1cbf(55);4hu3(55);4hu4(... | null | null | 6vga(140) | 3c1y(59) | 2kpo(0.7371000051) | 1lw7(0.543299973) | 3.40.50.10700;3.40.50.12090;3.40.50.10140;3.40.50.11370;3.40.50.10190;3.40.50.300;3.40.50.720;3.40.50.10090;3.40.50.510;3.40.50.2300;3.40.50.12570;3.40.50.790;3.40.50.11410;3.40.50.11420;3.40.50.1980;3.40.50.11230;3.40.50.10850;3.40.50.20 | null |
6vl5 | 2020-08-12 | other | id:C,A,E;type:D;source:synthetic construct;length:512;seq_nat:MKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAENLWVTVYYGVPVWKDAETTLFCASDAKAYETKKHNVWATHCCVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCTNVSTVQCTHGIKPVVS... | 56,806.613 | null | ||||| | ELECTRON MICROSCOPY | null | J.T. Martin;C.A. Cottrell;A. Antanasijevic;D.G. Carnathan;B.J. Cossette;C.A. Enemuo;E.H. Gebru;Y. Choe;F. Viviano;S. Fischinger;T. Tokatlian;K.M. Cirelli;G. Ueda;J. Copps;T. Schiffner;S. Menis;G. Alter;W.R. Schief;S. Crotty;N.P. King;D. Baker;G. Silvestri;A.B. Ward;D.J. Irvine | "Targeting HIV Env immunogens to B cell follicles in nonhuman primates through immune complex or protein nanoparticle formulations", NPJ Vaccines, 5, 72-72 | 10.1038/s41541-020-00223-1|32802411||2059-0105| | UK | Bg505 sosip reconstructed from a designed tetrahedral nanoparticle, bg505 sosip-t33_dn2 | de novo protein;nanoparticles;hiv env;de novo;vaccine design | 6vfl(1067);6vfk(1065);4dzv(95);4dzu(95) | 9ayv(923);6p6f(1049);6dfg(975);6nfc(943);9d7o(965);9d7g(965);9d7h(965);9d7p(965);9d7i(965);6nf5(943);6mar(963);6orn(953);9b8b(928);9b8c(929);6udk(953);6oro(953);5t3s(957);6orp(953);6um7(735);6um6(735);5u1f(967);6vy2(743);6uda(730);6mzj(712);6myy(712);9axd(1060);9ays(1060);9ay6(1060);6dfh(948);6orq(953);6vo1(984);6v0r(9... | null | null | 6vfl(1067) | 9ays(1060) | 6vfl(0.9494000077) | 6nf5(0.9172000289) | 1.10.287.540;1.20.5.510;6.10.250.890;1.10.287.190;1.10.287.2620;1.10.12.10;2.30.30.140;2.30.30.30;6.10.250.660;1.10.287.860;1.10.20.10;6.10.140.480;1.20.5.170;2.30.30.10;1.10.287.1050;2.30.30.360;1.20.58.90;1.10.287.3280 | null |
6vl6 | 2020-08-12 | other | id:A,C,D,E,F,G,H,I,J,K,L,M;type:D;source:synthetic construct;length:126;seq_nat:GSMGNLAEKMYKAGNAMYRKGQYTIAIIAYTLALLKDPNNAEAWYNLGNAAYKKGEYDEAIEAYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYKKALRLDPRNVDAIENLIEAEEKQGAS;seq_unnat:GSMGNLAEKMYKAGNAMYRKGQYTIAIIAYTLALLKDPNNAEAWYNLGNAAYKKGEYDEAIEAYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYKKALRL... | 14,136.632 | null | ||||| | ELECTRON MICROSCOPY | null | J.T. Martin;C.A. Cottrell;A. Antanasijevic;D.G. Carnathan;B.J. Cossette;C.A. Enemuo;E.H. Gebru;Y. Choe;F. Viviano;S. Fischinger;T. Tokatlian;K.M. Cirelli;G. Ueda;J. Copps;T. Schiffner;S. Menis;G. Alter;W.R. Schief;S. Crotty;N.P. King;D. Baker;G. Silvestri;A.B. Ward;D.J. Irvine | "Targeting HIV Env immunogens to B cell follicles in nonhuman primates through immune complex or protein nanoparticle formulations", NPJ Vaccines, 5, 72-72 | 10.1038/s41541-020-00223-1|32802411||2059-0105| | UK | De novo designed tetrahedral nanoparticle t33_dn2 presenting bg505 sosip trimers | de novo protein;nanoparticles;hiv env;de novo;vaccine design | 6v8e(213);6vfj(212);6vfh(197);6vfk(196);6vfi(194);5hrz(225);8fwd(169);8umr(167);8ump(167);8ch0(169);8ckr(169);8chy(169);8ot7(169);8cqq(169);8cp8(169);8cmq(169);8cqp(169);8cig(169);8bu0(169);2wqh(168);8far(79);8cwz(79);8cut(79);8cus(79) | 9gzg(134);4eqf(57) | 6vfh(0.9563999772);6v8e(0.9618999958);6vfk(0.9650999904);8fwd(0.9710000157);6vfj(0.9595999718);2wqh(0.9523000121);8cqp(0.9531000257);2hyz(0.9592000246);5hrz(0.9510999918) | null | 5hrz(225) | 9gzg(134) | 8fwd(0.9710000157) | 2vyi(0.9265000224) | 1.25.40.250;1.20.5.420;6.10.140.730;1.25.40.410;1.25.10.10;1.25.40.420;1.10.287.1100;1.25.40.240;1.20.58.2200;1.20.970.20;1.10.8.500;1.20.5.2020;1.25.40.1040;1.25.40.290;1.25.40.440;1.10.10.2400;6.10.250.1250;1.20.58.80;1.25.40.970;1.25.40.10;6.10.250.3030;6.10.140.170;1.25.40.320;1.20.58.940;1.10.10.1270;1.20.58.2070;... | null |
6vzx | 2020-09-02 | other | id:A,B,C;type:U;source:unknown;length:26;seq_nat:XPPGPPGPPGPKGEPGPPGPPGPPGX;seq_unnat:(ACE)P(HYP)GP(HYP)GP(HYP)GPKGE(HYP)GP(HYP)GP(HYP)GP(HYP)G(NH2) | 2,228.375 | C 1 2 1 | 134.835|14.113|24.568|90.000|90.350|90.000 | X-RAY DIFFRACTION | Fmoc solid phase peptide chemistry with n-terminal acetylation and c-terminal amidation | S.A.H. Hulgan;A.A. Jalan;I.C. Li;D.R. Walker;M.D. Miller;A.J. Kosgei;W. Xu;G.N. Phillips Jr.;J.D. Hartgerink | "Covalent Capture of Collagen Triple Helices Using Lysine-Aspartate and Lysine-Glutamate Pairs", Biomacromolecules, 21, 3772-3781 | 10.1021/acs.biomac.0c00878|32820897||1526-4602| | US | Structure of a covalently captured collagen triple helix using lysine-glutamate pairs | collagen mimetic peptide;biosynthetic protein;isopeptide bond;triple helix | null | null | null | null | 6vzx(0) | null | null | null | null | null |
6w3w | 2020-04-08 | other | id:A;type:D;source:synthetic construct;length:108;seq_nat:DEDREWIERFNRILIESLTTGDEHTLKELIDPNARLVINGRDIHGREEFVRLLSEMGVKHFHVHDVKVVGNKAVTRGILYFNGREYDVDVFTRKIDGRWLYESLEVK;seq_unnat:DEDREWIERFNRILIESLTTGDEHTLKELIDPNARLVINGRDIHGREEFVRLLSEMGVKHFHVHDVKVVGNKAVTRGILYFNGREYDVDVFTRKIDGRWLYESLEVK | 12,687.356 | P 41 21 2 | 48.864|48.864|84.576|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | B. Basanta;M.J. Bick;A.K. Bera;C. Norn;C.M. Chow;L.P. Carter;I. Goreshnik;F. Dimaio;D. Baker | "An enumerative algorithm for de novo design of proteins with diverse pocket structures", Proc.Natl.Acad.Sci.USA, 117, 22135-22145 | 10.1073/pnas.2005412117|32839327|0040|1091-6490|PNASA6 | US | An enumerative algorithm for de novo design of proteins with diverse pocket structures | de novo protein;de novo design;ntf2 | null | null | null | null | 9qzd(40) | null | 5iep(0.6832000017) | 3fka(0.7031999826) | 2.30.30.400;3.10.450.280;3.10.450.100;3.10.450.230;3.30.2310.40;3.10.450.10;3.10.450.540;3.10.450.50 | null |
6w40 | 2020-04-08 | other | id:A,B;type:D;source:synthetic construct;length:121;seq_nat:GDEEEKHLRDMMEIVIKLFMTGDWDAFHEMADPDVKFQVDVGDKHIHRHGREEVVEELIRLLEHWRVRNIRIHDIKLIGDKLVVEGRWETSYGDKSHDEDVELIVIVVDGKIKKVRIIIR;seq_unnat:GDEEEKHLRDMMEIVIKLFMTGDWDAFHEMADPDVKFQVDVGDKHIHRHGREEVVEELIRLLEHWRVRNIRIHDIKLIGDKLVVEGRWETSYGDKSHDEDVELIVIVVDGKIKKVRIIIR | 14,285.439 | P 21 21 21 | 37.532|73.742|86.063|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | B. Basanta;M.J. Bick;A.K. Bera;C. Norn;C.M. Chow;L.P. Carter;I. Goreshnik;F. Dimaio;D. Baker | "An enumerative algorithm for de novo design of proteins with diverse pocket structures", Proc.Natl.Acad.Sci.USA, 117, 22135-22145 | 10.1073/pnas.2005412117|32839327|0040|1091-6490|PNASA6 | US | An enumerative algorithm for de novo design of proteins with diverse pocket structures | de novo protein;de novo design;ntf2 | null | null | null | null | 6w40(0) | null | 5tph(0.6571000218) | 4xbx(0.7310000062) | 6.10.250.1120;6.10.250.510;4.10.810.10;2.20.25.80;1.20.5.800;6.10.250.870;6.10.250.20;1.20.5.740;6.10.250.740;4.10.910.10;6.10.250.200;6.10.250.3130;6.10.140.280;6.10.250.1150;6.10.250.330;1.10.287.870;1.10.287.1090;1.20.5.5100 | null |
6w46 | 2020-08-12 | other | id:A,B,C;type:U;source:unknown;length:31;seq_nat:PPGPPGPRGPPGPPGVPGPPGPPGYPGPPGX;seq_unnat:P(HYP)GP(HYP)GPRGP(HYP)GP(HYP)GV(HYP)GP(HYP)GP(HYP)G(4BF)(HYP)GP(HYP)(GLZ)(NH2) | 2,847.886 | P 1 21 1 | 37.300|19.680|40.810|90.00|93.26|90.00 | X-RAY DIFFRACTION | null | S.D. Melton;E.A.E. Brackhahn;S.J. Orlin;P. Jin;D.M. Chenoweth | "Rules for the design of aza-glycine stabilized triple-helical collagen peptides", Chem Sci, 11, 10638-10646 | 10.1039/d0sc03003a|34094319||2041-6520| | UK | Valine-containing collagen peptide | cmp;triple helix;structural protein;collagen;biosynthetic protein | null | null | null | null | 6w46(0) | null | 6w46(0) | null | null | null |
6w47 | 2020-08-12 | other | id:A,B,C;type:U;source:unknown;length:28;seq_nat:PPGPPGPRGPPGPPGPPGGPGPPGPPGX;seq_unnat:P(HYP)GP(HYP)GPRGP(HYP)GP(HYP)GP(HYP)G(SAR)(HYP)GP(HYP)GP(HYP)(GLZ)(NH2) | 2,423.597 | P 1 21 1 | 31.679|19.556|37.528|90.00|98.92|90.00 | X-RAY DIFFRACTION | null | S.D. Melton;E.A.E. Brackhahn;S.J. Orlin;P. Jin;D.M. Chenoweth | "Rules for the design of aza-glycine stabilized triple-helical collagen peptides", Chem Sci, 11, 10638-10646 | 10.1039/d0sc03003a|34094319||2041-6520| | UK | Peptoid-containing collagen peptide | cmp;triple helix;structural protein;collagen;biosynthetic protein;peptoid | null | null | null | null | 6w47(0) | null | null | null | null | null |
6w6x | 2020-08-26 | other | id:A,B;type:D;source:synthetic construct;length:127;seq_nat:SVKSEYAEAAAVGQEAVAVFNTMKAAFQNGDKEAVAQYLARLASLYTRHEELLNRILEKARREGNKEAVTLMNEFTATFQTGKSIFNAMVAAFKNGDDDSFESYLQALEKVTAKGETLADQIAKAL;seq_unnat:SVKSEYAEAAAVGQEAVAVFNTMKAAFQNGDKEAVAQYLARLASLYTRHEELLNRILEKARREGNKEAVTLMNEFTATFQTGKSIFNAMVAAFKNGDDDSFESYLQALEKVTAKGETLADQIA... | 13,817.49 | C 1 2 1 | 51.426|43.648|91.835|90.000|91.360|90.000 | X-RAY DIFFRACTION | null | N.F. Polizzi;W.F. DeGrado | "A defined structural unit enables de novo design of small-molecule-binding proteins", Science, 369, 1227-1233 | 10.1126/science.abb8330|32883865|0038|1095-9203|SCIEAS | US | Crystal structure of able apo-protein | de novo;4-helix bundle;de novo protein;ligand-binding | 7hjx(239);7hj7(239);7hjh(239);7hje(239);7hjd(239);7hjt(239);7hjo(239);7hjs(239);6w70(239);7hk3(239);7hj4(239);7hk0(239);7hiz(239);7hk4(239);7hjj(239);7hjl(239);7hj5(239);7hjr(239);7hj9(239);7hju(239);7hjw(239);7hj2(239);7hj1(239);7hj0(239);7hjp(239);7hjz(239);7hiy(239);7hj6(239);7hjb(239);7hjv(239);7hjn(239);7hjc(239);... | 9dw2(239);9dwa(196);9dwb(196);9dwc(196) | null | null | 7hjx(239) | 9dw2(239) | 7hj8(0.9025999904) | 4f7g(0.6866999865) | 1.20.120.160;1.20.58.60;1.20.120.400;1.20.120.360;1.20.1270.410;1.20.1440.150;1.20.58.400;1.20.120.290;1.20.58.810;1.20.120.20;1.20.120.580;1.20.120.330;1.20.120.1370;1.20.120.470;1.20.120.30;1.20.120.960;1.20.120.260;1.20.1270.50;1.20.1440.210;1.20.120.50;1.20.120.1060;1.20.58.70;1.20.120.440;1.20.1440.60;1.20.58.80;1... | null |
6w70 | 2020-08-26 | other | id:A,C;type:D;source:synthetic construct;length:127;seq_nat:SVKSEYAEAAAVGQEAVAVFNTMKAAFQNGDKEAVAQYLARLASLYTRHEELLNRILEKARREGNKEAVTLMNEFTATFQTGKSIFNAMVAAFKNGDDDSFESYLQALEKVTAKGETLADQIAKAL;seq_unnat:SVKSEYAEAAAVGQEAVAVFNTMKAAFQNGDKEAVAQYLARLASLYTRHEELLNRILEKARREGNKEAVTLMNEFTATFQTGKSIFNAMVAAFKNGDDDSFESYLQALEKVTAKGETLADQIA... | 13,817.49 | P 1 21 1 | 35.194|78.445|43.133|90.000|106.950|90.000 | X-RAY DIFFRACTION | null | N.F. Polizzi;W.F. DeGrado | "A defined structural unit enables de novo design of small-molecule-binding proteins", Science, 369, 1227-1233 | 10.1126/science.abb8330|32883865|0038|1095-9203|SCIEAS | US | Crystal structure of apixaban-bound able | de novo;4-helix bundle;de novo protein;ligand-binding | 7hjx(239);7hj7(239);7hjh(239);7hje(239);7hjd(239);7hjt(239);7hjo(239);7hjs(239);7hk3(239);7hj4(239);7hk0(239);7hiz(239);6w6x(239);7hk4(239);7hjj(239);7hjl(239);7hj5(239);7hjr(239);7hj9(239);7hju(239);7hjw(239);7hj2(239);7hj1(239);7hj0(239);7hjp(239);7hjz(239);7hiy(239);7hj6(239);7hjb(239);7hjv(239);7hjn(239);7hjc(239);... | 9dw2(239);9dwa(196);9dwb(196);9dwc(196) | 7hjz(0.9562000036) | null | 7hjx(239) | 9dw2(239) | 7hjz(0.9562000036) | 2yev(0.6876999736) | 1.20.120.160;1.20.58.740;1.20.58.60;1.20.120.400;1.20.120.360;1.20.1270.410;1.20.1440.150;1.20.58.400;1.20.120.290;1.20.58.810;1.20.120.20;1.20.120.580;1.20.120.330;1.20.120.1370;1.20.120.470;1.20.120.30;1.20.58.1800;1.20.120.960;1.20.120.260;1.20.1270.50;1.20.1440.210;1.20.120.50;1.20.120.1060;1.20.120.440;1.20.1440.6... | null |
6w90 | 2020-08-19 | other | id:A;type:D;source:synthetic construct;length:132;seq_nat:GSHMSREEIRKVVEEYIRLLYTDPDQFKKAARDKLLSPDVRIEIGNYTFDSRNLDRFLDAMQEWASRYDRVEIRKVQVDGNHVRVEIELESNGKKWTFEIEVEVRNGKIKRIRQQVDPEYKKVVQNLWNNT;seq_unnat:GSHMSREEIRKVVEEYIRLLYTDPDQFKKAARDKLLSPDVRIEIGNYTFDSRNLDRFLDAMQEWASRYDRVEIRKVQVDGNHVRVEIELESNGKKWTFEIEVEVRNGKIKRIRQQVDPEY... | 15,781.833 | P 21 21 21 | 33.500|51.990|66.410|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | X. Pan;M.C. Thompson;Y. Zhang;L. Liu;J.S. Fraser;M.J.S. Kelly;T. Kortemme | "Expanding the space of protein geometries by computational design of de novo fold families", Science, 369, 1132-1136 | 10.1126/science.abc0881|32855341|0038|1095-9203|SCIEAS | US | De novo designed ntf2 fold protein nt-9 | geometric sampling;de novo fold family;protein design;loop-helix-loop motif;de novo protein | 5tpj(160);5trv(82);5u35(70);5tph(66);5l33(55) | null | null | null | 5tpj(160) | null | 5tpj(0.6856999993) | 5evh(0.6098999977) | 6.10.250.1120;6.10.250.1360;6.10.140.2060;1.10.287.100;6.10.140.1390;6.10.250.870;1.20.5.960;1.20.5.3070;6.10.250.20;1.10.287.150;4.10.910.10;6.10.250.3130;6.10.140.280;6.10.250.330;1.10.287.1090;1.20.5.5100 | null |
6wi5 | 2020-04-22 | other | id:A,B;type:U;source:unknown;length:91;seq_nat:EEVVVEIRIRVQREEKVRRLIKRILEEVKRESNSVEVHVETRKRNGEVEVHVRIRHDDKETIERLVERILREIKKLDKNSEVEVRTTTKR;seq_unnat:EEVVVEIRIRVQREEKVRRLIKRILEEVKRESNSVEVHVETRKRNGEVEVHVRIRHDDKETIERLVERILREIKKLDKNSEVEVRTTTKR | 11,031.742 | I 41 2 2 | 64.027|64.027|221.412|90.000|90.000|90.000 | X-RAY DIFFRACTION | De novo designed | Z. Chen;R.D. Kibler;A. Hunt;F. Busch;J. Pearl;M. Jia;Z.L. VanAernum;B.I.M. Wicky;G. Dods;H. Liao;M.S. Wilken;C. Ciarlo;S. Green;H. El-Samad;J. Stamatoyannopoulos;V.H. Wysocki;M.C. Jewett;S.E. Boyken;D. Baker | "De novo design of protein logic gates", Science, 368, 78-84 | 10.1126/science.aay2790|32241946|0038|1095-9203|SCIEAS | US | De novo designed protein foldit4 | de novo protein;de novo design;foldit | null | null | null | null | 6wi5(0) | null | 4ney(0.6054000258) | 6dcr(0.659799993) | 3.30.70.140;3.30.70.790;3.30.70.2860;3.30.70.380;3.30.70.1430;3.30.70.2810;3.30.70.870;3.30.70.1280;3.30.70.600;3.30.70.3250;3.30.70.1380;3.30.70.1440;3.30.70.2280;3.30.70.340;3.30.70.1130;3.30.70.330;3.30.70.360;3.30.70.1320;3.30.310.50;3.30.70.2070;3.30.70.2690;3.30.70.420;3.30.70.100;3.30.70.120;3.30.70.60;3.30.70.1... | null |
6wky | 2020-12-02 | other | id:B,C,D,A,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t;type:U;source:unknown;length:29;seq_nat:QAEILRAYARILEADAKILEAHAEILKAQ;seq_unnat:QAEILRAYARILEADAKILEAHAEILKAQ | 3,253.769 | null | ||||| | ELECTRON MICROSCOPY | null | F. Wang;O. Gnewou;C. Modlin;L.C. Beltran;C. Xu;Z. Su;P. Juneja;G. Grigoryan;E.H. Egelman;V.P. Conticello | "Structural analysis of cross alpha-helical nanotubes provides insight into the designability of filamentous peptide nanomaterials", Nat Commun, 12, 407-407 | 10.1038/s41467-020-20689-w|33462223||2041-1723| | UK | Cryo-em of form 1 related peptide filament, 29-24-3 | filament;cryo-em;self-assembly peptide filament;protein fibril | null | null | null | null | 6wl1(47) | 6wl7(40) | 7rx5(0.9120000005) | null | 6.10.250.770;1.20.5.420;1.20.5.430;1.20.5.2620;1.20.5.770;1.20.5.1450;1.20.5.700;6.10.250.500;6.10.250.200;6.10.250.270;6.10.250.2720;6.10.250.2060;6.10.250.1090;1.20.5.3960;6.10.250.1210;6.10.250.2370;6.10.250.1020;6.10.250.1440;1.20.5.1610;6.10.250.160;6.10.250.850;6.10.250.490;6.10.250.380;1.20.5.110;1.20.5.250;1.20... | null |
6wl0 | 2020-12-02 | other | id:A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o;type:U;source:unknown;length:36;seq_nat:TLEELRAEARILEAKAEILKAKAEVLKAKAEILKAQ;seq_unnat:TLEELRAEARILEAKAEILKAKAEVLKAKAEILKAQ | 3,997.762 | null | ||||| | ELECTRON MICROSCOPY | null | F. Wang;O. Gnewou;C. Modlin;L.C. Beltran;C. Xu;Z. Su;P. Juneja;G. Grigoryan;E.H. Egelman;V.P. Conticello | "Structural analysis of cross alpha-helical nanotubes provides insight into the designability of filamentous peptide nanomaterials", Nat Commun, 12, 407-407 | 10.1038/s41467-020-20689-w|33462223||2041-1723| | UK | Cryo-em of form 1 related peptide filament, 36-31-3-rd | filament;cryo-em;self-assembly peptide filament;protein fibril | null | null | null | null | 6wl1(44) | 6wl7(38) | 6wl1(0.9258999825) | null | 6.10.250.3050;1.20.5.420;6.10.250.2070;1.20.5.430;6.10.250.810;1.20.5.1450;1.20.5.750;1.20.5.700;6.10.250.2150;6.10.250.2720;1.10.287.210;6.10.250.2060;1.20.5.520;6.10.250.1020;6.10.250.1440;6.10.250.10;1.20.5.1610;6.10.250.850;6.10.250.380;1.20.5.110;1.20.5.250;1.20.5.160;1.20.5.580;1.20.890.10;1.20.5.460;6.10.250.192... | null |
6wl1 | 2020-12-02 | other | id:A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v,w,x,y,z;type:U;source:unknown;length:36;seq_nat:QAEILRAYARILEADAEILKAQAKILEAHAEILKAQ;seq_unnat:QAEILRAYARILEADAEILKAQAKILEAHAEILKAQ | 4,008.662 | null | ||||| | ELECTRON MICROSCOPY | null | F. Wang;O. Gnewou;C. Modlin;L.C. Beltran;C. Xu;Z. Su;P. Juneja;G. Grigoryan;E.H. Egelman;V.P. Conticello | "Structural analysis of cross alpha-helical nanotubes provides insight into the designability of filamentous peptide nanomaterials", Nat Commun, 12, 407-407 | 10.1038/s41467-020-20689-w|33462223||2041-1723| | UK | Cryo-em of form 1 related peptide filament, 36-31-3 | filament;cryo-em;self-assembly peptide filament;protein fibril | null | null | null | null | 6wky(48) | 6wl8(47) | 6wl0(0.9235000014) | null | 6.10.250.770;6.10.250.3050;1.20.5.420;6.10.250.2070;1.20.5.430;6.10.250.810;1.20.5.1450;1.20.5.750;1.20.5.700;6.10.250.2150;6.10.250.2720;1.10.287.210;6.10.250.2060;1.20.5.470;6.10.250.1090;1.20.5.520;6.10.250.1020;6.10.250.1440;6.10.250.10;1.20.5.1610;6.10.250.850;6.10.250.380;1.20.5.110;1.20.5.250;1.20.5.160;6.10.250... | null |
6wmk | 2021-11-10 | other | id:A,C;type:U;source:unknown;length:69;seq_nat:SGGSTWQWVLINISEEARQRIEEYVRRISKKEGTEVHFEKDDGVLHIRVKNLHEKRAREIHEYAKRVIL;seq_unnat:SGGSTWQWVLINISEEARQRIEEYVRRISKKEGTEVHFEKDDGVLHIRVKNLHEKRAREIHEYAKRVIL|id:B,D;type:U;source:unknown;length:69;seq_nat:SGGSSSIFLLSNVSEEARQRAEEYVRRISKKEGTEVRFEKDDGFLTIEVKNLSEERLREIAEYLWRVAV;seq_un... | 8,286.429 | P 1 21 1 | 56.072|38.175|60.379|90.000|98.260|90.000 | X-RAY DIFFRACTION | null | D.D. Sahtoe;F. Praetorius;A. Courbet;Y. Hsia;B.I.M. Wicky;N.I. Edman;L.M. Miller;B.J.R. Timmermans;J. Decarreau;H.M. Morris;A. Kang;A.K. Bera;D. Baker | "Reconfigurable asymmetric protein assemblies through implicit negative design", Science, 375, eabj7662-eabj7662 | 10.1126/science.abj7662|35050655|0038|1095-9203|SCIEAS | US | Crystal structure of beta sheet heterodimer lhd29 | transferrin;de novo protein;de novo design | 7mwq(111) | null | null | null | 7mwq(111) | null | 7mwq(0.9041000009) | 4hhu(0.7134000063) | 3.30.70.1140;3.30.70.790;3.30.70.2860;3.30.70.2250;3.30.70.80;3.30.70.2810;3.30.70.870;3.30.1370.10;3.30.70.250;3.30.70.860;3.30.70.240;3.30.1360.40;3.30.70.600;3.30.70.2280;3.30.70.1750;3.30.70.1130;3.30.70.330;3.30.70.2750;3.30.70.1940;3.30.70.1170;3.30.70.2430;3.30.70.2370;3.30.310.50;3.30.70.2380;3.30.70.100;3.30.7... | null |
6wrv | 2021-04-28 | other | id:A,B,E;type:N;source:Homo sapiens;length:646;seq_nat:RLYWDDLKRKLSEKLDSTDFTSTIKLLNENSYVPREAGSQKDENLALYVENQFREFKLSKVWRDQHFVKIQVKDSAQNSVIIVDKNGRLVYLVENPGGYVAYSKAATVTGKLVHANFGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNMEGDCPSDWKTDSTCRMVTSESKNVKLTVSNVLKEIK... | 71,660.086 | P 42 21 2 | 256.079|256.079|128.084|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | D.D. Sahtoe;A. Coscia;N. Mustafaoglu;L.M. Miller;D. Olal;I. Vulovic;T.Y. Yu;I. Goreshnik;Y.R. Lin;L. Clark;F. Busch;L. Stewart;V.H. Wysocki;D.E. Ingber;J. Abraham;D. Baker | "Transferrin receptor targeting by de novo sheet extension", Proc.Natl.Acad.Sci.USA, 118 | 10.1073/pnas.2021569118|33879614|0040|1091-6490|PNASA6 | US | Crystal structure of computationally designed protein 3ds18 in complex with the human transferrin receptor ectodomain | de novo protein-metal transport complex;complex;beta sheet;receptor;de novo protein;de novo protein/metal transport | null | null | null | null | 6wrv(0) | null | 6wrx(0.8406999707) | 6wrw(0.8453000188) | 6.10.250.2850;1.20.5.3070;3.30.56.10;6.10.250.2150;3.30.1370.10;3.30.70.250;6.10.250.1090;6.10.250.1210;3.30.1360.40;6.10.250.160;6.10.250.490;3.30.70.1750;3.30.70.2750;6.10.250.30;1.20.5.460;1.10.287.870;6.10.250.2580;1.20.5.960;1.10.10.60;6.10.250.3070;3.30.70.1070;1.10.287.10;3.30.70.2860;1.20.5.2620;3.30.70.2250;1.... | null |
6wrx | 2021-04-28 | other | id:A,B;type:N;source:Homo sapiens;length:647;seq_nat:RLYWDDLKRKLSEKLDSTDFTSTIKLLNENSYVPREAGSQKDENLALYVENQFREFKLSKVWRDQHFVKIQVKDSAQNSVIIVDKNGRLVYLVENPGGYVAYSKAATVTGKLVHANFGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNMEGDCPSDWKTDSTCRMVTSESKNVKLTVSNVLKEIKIL... | 71,807.258 | P 32 2 1 | 137.425|137.425|280.158|90.000|90.000|120.000 | X-RAY DIFFRACTION | null | D.D. Sahtoe;A. Coscia;N. Mustafaoglu;L.M. Miller;D. Olal;I. Vulovic;T.Y. Yu;I. Goreshnik;Y.R. Lin;L. Clark;F. Busch;L. Stewart;V.H. Wysocki;D.E. Ingber;J. Abraham;D. Baker | "Transferrin receptor targeting by de novo sheet extension", Proc.Natl.Acad.Sci.USA, 118 | 10.1073/pnas.2021569118|33879614|0040|1091-6490|PNASA6 | US | Crystal structure of computationally designed protein 2ds25.1 in complex with the human transferrin receptor ectodomain | de novo protein-metal transport complex;complex;beta sheet;receptor;de novo protein;de novo protein/metal transport | null | 6wrw(159) | null | 6wrw(0.9641000032) | 6wrx(0) | 6wrw(159) | 6wrv(0.7985000014) | 6wrw(0.9641000032) | 3.30.70.790;3.30.70.2860;1.10.287.1110;3.30.70.2250;3.30.70.80;3.30.70.20;3.30.56.10;6.10.250.500;3.30.70.870;6.10.130.40;3.30.1370.10;1.20.5.5100;6.10.250.740;3.30.70.250;3.30.70.860;3.30.70.2350;6.10.250.890;1.10.286.70;3.30.70.240;3.30.1360.40;3.30.70.600;3.30.70.1750;6.10.140.650;3.30.70.1130;3.30.70.330;3.30.70.27... | null |
6wvs | 2020-11-25 | other | id:A;type:D;source:synthetic construct;length:195;seq_nat:MDILIVNATDVDEMLKQVEILRRLGAKQIAVVSDDWRILQEALKKGGDILIVNATDVDEMLKQVEILRRLGAKQIAVVSDDWRILQEALKKGGDILIVNATDVDEMLKQVEILRRLGAKQIAVVSDDWRILQEALKKGGDILIVNATDVDEMLKQVEILRRLGAKQIAVVSDDWRILQEALKKGGLEHHHHHH;seq_unnat:MDILIVNATDVDEMLKQVEILRRLGAKQIAVVSDDWRILQEALKKGGDILIVNATDVD... | 21,824.438 | P 32 | 53.199|53.199|64.270|90.000|90.000|120.000 | X-RAY DIFFRACTION | null | S.J. Caldwell;I.C. Haydon;N. Piperidou;P.S. Huang;M.J. Bick;H.S. Sjostrom;D. Hilvert;D. Baker;C. Zeymer | "Tight and specific lanthanide binding in a de novo TIM barrel with a large internal cavity designed by symmetric domain fusion", Proc.Natl.Acad.Sci.USA, 117, 30362-30369 | 10.1073/pnas.2008535117|33203677|0040|1091-6490|PNASA6 | US | Hyperstable de novo tim barrel variant denovotim15 | hyperstable;de novo;tim barrel;repeat protein;de novo protein;symmetric | 6yqx(340);7p12(334);6z2i(287);7ot8(271);7osv(271);6yqy(230);5bvl(228);7ot7(224);7osu(224);7a8s(216);6wxp(158);6wxo(158);9qul(154);9quo(154);9qud(154);9qui(154);9quc(154);6zv9(154);7mcc(120);7mcd(119);9qup(59) | null | null | null | 6yqx(340) | null | 7p12(0.8802000284) | 5upy(0.6006000042) | 3.40.1390.10;3.40.1260.10;3.40.50.720;3.30.160.600;3.30.70.260 | null |
6wxo | 2020-11-25 | other | id:A,B;type:D;source:synthetic construct;length:193;seq_nat:MGHHHHHHGGWGGSGGENLYFQGDILIVNAKDVDEMLKQVEILRRLGAKQIAVHSSDWRILQEALKKGGDILIVNGGGMTITFRGDDLEALLKAAIEMIKQALKFGATITLSLDGNDLNINITGVPEQVRKELAKEAERLAKEFGITVTRTGGGDVDEMLKQVEILRRLGAKQIAVESDDWRILQEALKKG;seq_unnat:MGHHHHHHGGWGGSGGENLYFQGDILIVNAKDVDEMLKQVEILRRLGAKQIAVHSSDW... | 21,012.135 | P 1 21 1 | 48.851|62.512|48.949|90.000|95.269|90.000 | X-RAY DIFFRACTION | null | S.J. Caldwell;I.C. Haydon;N. Piperidou;P.S. Huang;M.J. Bick;H.S. Sjostrom;D. Hilvert;D. Baker;C. Zeymer | "Tight and specific lanthanide binding in a de novo TIM barrel with a large internal cavity designed by symmetric domain fusion", Proc.Natl.Acad.Sci.USA, 117, 30362-30369 | 10.1073/pnas.2008535117|33203677|0040|1091-6490|PNASA6 | US | De novo tim barrel-ferredoxin fold fusion homodimer with 2-histidine 2-glutamate centre tfd-he | hyperstable;de novo;tim barrel;homodimer;symmetric fusion;repeat protein;ferredoxin fold;de novo protein;symmetric | 6wxp(329);6zv9(325);9qud(323);9qui(323);9quc(323);9qul(321);9quo(321);6wvs(158);6yqx(155);7p12(153);9qup(137);4pww(135);6z2i(123);7ot8(115);7osv(115);2mtl(112);2kl8(106);4ky3(106);4kyz(106);4rjv(103);6yqy(97);5bvl(96);5cw9(95);7ot7(94);7osu(94);7a8s(94);4ney(93);4nez(92);7smj(73);7mcd(55);7mcc(53);7uek(52) | 4hhu(99) | null | null | 6wxp(329) | 4hhu(99) | 9qup(0.8374000192) | 4hhu(0.6567000151) | 3.30.70.1140;3.30.70.790;3.30.70.2860;3.30.70.2250;3.30.70.1430;3.30.70.1650;3.30.70.80;3.30.70.20;3.30.70.2810;3.30.70.1280;3.30.70.870;3.30.1370.10;3.30.70.1520;3.40.50.12480;3.30.70.1400;3.30.70.250;3.30.70.860;3.30.70.930;3.30.70.2350;3.30.70.240;3.30.70.600;3.30.70.2280;3.30.70.1440;3.30.70.1750;3.30.70.340;3.30.7... | null |
6wxp | 2020-11-25 | other | id:A,B,C,D,E,F;type:D;source:synthetic construct;length:174;seq_nat:GAMGDILIVNAKDVDEMLKQVEILRRLGAKQIAVESSDWRILQEALKKGGDILIVNGGGMTITFRGDDLEALLKAAIEMIKQALKFGATITLSLDGNDLNINITGVPEQVRKELAKEAERLAKEFGITVTRTGGGDVDEMLKQVEILRRLGAKQIAVESDDWRILQEALKKG;seq_unnat:GAMGDILIVNAKDVDEMLKQVEILRRLGAKQIAVESSDWRILQEALKKGGDILIVNGGGMTITFRGDDL... | 18,834.84 | P 1 21 1 | 43.910|101.160|117.730|90.000|95.497|90.000 | X-RAY DIFFRACTION | null | S.J. Caldwell;I.C. Haydon;N. Piperidou;P.S. Huang;M.J. Bick;H.S. Sjostrom;D. Hilvert;D. Baker;C. Zeymer | "Tight and specific lanthanide binding in a de novo TIM barrel with a large internal cavity designed by symmetric domain fusion", Proc.Natl.Acad.Sci.USA, 117, 30362-30369 | 10.1073/pnas.2008535117|33203677|0040|1091-6490|PNASA6 | US | De novo tim barrel-ferredoxin fold fusion homodimer with 4-glutamate centre tfd-ee | metal binding;homodimeric fusion;tim barrel;symmetric fusion protein;ferredoxin fold;de novo protein | 6zv9(333);9qud(331);9qui(331);9quc(331);9qul(329);9quo(329);6wxo(329);6wvs(158);6yqx(155);7p12(153);9qup(139);4pww(135);6z2i(123);7ot8(115);7osv(115);2mtl(112);2kl8(106);4ky3(106);4kyz(106);4rjv(103);6yqy(97);5bvl(96);5cw9(95);7ot7(94);7osu(94);7a8s(94);4ney(93);4nez(92);7mcd(55);7mcc(54);7smj(53) | 4hhu(99) | null | null | 6zv9(333) | 4hhu(99) | 6zv9(0.9093999863) | 4hhu(0.7505999804) | 3.30.70.1140;3.30.70.790;3.30.70.2860;3.40.1260.10;3.30.70.2250;3.30.70.1430;3.30.70.80;3.30.70.20;3.30.70.2810;3.30.70.870;3.30.70.1280;3.30.1370.10;3.30.70.1520;3.30.70.1400;3.30.70.250;3.30.70.860;3.30.70.2350;3.30.70.240;3.30.70.600;3.30.70.2280;3.30.70.1440;3.30.70.1750;3.30.70.2940;3.30.70.1130;3.30.70.330;3.30.7... | null |
6x1k | 2021-02-17 | other | id:A;type:D;source:synthetic construct;length:125;seq_nat:MQDGPGTLDVFVAAGWNTDNTIEITGGATYQLSPYIMVKAGYGWNNSSLNRFEFGGGLQYKVTPDLEPYAWAGATYNTDNTLVPAAGAGFRYKVSPEVKLVVEYGWNNSSLQFLQAGLSYRIQP;seq_unnat:MQDGPGTLDVFVAAGWNTDNTIEITGGATYQLSPYIMVKAGYGWNNSSLNRFEFGGGLQYKVTPDLEPYAWAGATYNTDNTLVPAAGAGFRYKVSPEVKLVVEYGWNNSSLQFLQAGLSYRIQP | 13,547.988 | null | ||||| | SOLUTION NMR | null | A.A. Vorobieva;P. White;B. Liang;J.E. Horne;A.K. Bera;C.M. Chow;S. Gerben;S. Marx;A. Kang;A.Q. Stiving;S.R. Harvey;D.C. Marx;G.N. Khan;K.G. Fleming;V.H. Wysocki;D.J. Brockwell;L.K. Tamm;S.E. Radford;D. Baker | "De novo design of transmembrane beta barrels", Science, 371 | 10.1126/science.abc8182|33602829|0038|1095-9203|SCIEAS | US | Solution nmr structure of de novo designed tmb2.3 | beta-barrel;de novo design;membrane protein | 6x9z(170);9fdg(77) | null | null | null | 6x9z(170) | 1qjp(49) | 6x9z(0.7673000097) | 2jmm(0.674399972) | 2.40.128.350;2.40.128.380;2.40.128.360;2.40.128.220;2.40.128.30;2.40.128.340;2.30.31.50;2.40.128.270;2.40.160.90;2.40.128.10;2.40.128.640;2.40.128.420;2.40.128.320;2.40.370.10;2.40.128.50;2.40.128.300;2.40.128.280;2.40.160.20;2.40.128.200;2.70.130.10;2.40.128.160 | null |
6x8n | 2020-08-26 | other | id:A,B;type:D;source:synthetic construct;length:127;seq_nat:SVKSEYAEAAAVGQEAVAVFNTMKAAFQNGDKEAVAQYLARLASLYTRAEELLNRILEKARREGNKEAVTLMNEFTATFQTGKSIFNAMVAAFKNGDDDSFESYLQALEKVTAKGETLADQIAKAL;seq_unnat:SVKSEYAEAAAVGQEAVAVFNTMKAAFQNGDKEAVAQYLARLASLYTRAEELLNRILEKARREGNKEAVTLMNEFTATFQTGKSIFNAMVAAFKNGDDDSFESYLQALEKVTAKGETLADQIA... | 13,750.42 | P 1 | 36.750|46.440|47.000|90.130|117.660|106.890 | X-RAY DIFFRACTION | null | N.F. Polizzi;W.F. DeGrado | "A defined structural unit enables de novo design of small-molecule-binding proteins", Science, 369, 1227-1233 | 10.1126/science.abb8330|32883865|0038|1095-9203|SCIEAS | US | Crystal structure of h49a able mutant | de novo;4-helix bundle;de novo protein;ligand-binding | 7hjx(235);7hj7(235);7hjh(235);7hje(235);7hjd(235);7hjt(235);7hjo(235);7hjs(235);6w70(235);7hk3(235);7hj4(235);7hk0(235);7hiz(235);6w6x(235);7hk4(235);7hjj(235);7hjl(235);7hj5(235);7hjr(235);7hj9(235);7hju(235);7hjw(235);7hj2(235);7hj1(235);7hj0(235);7hjp(235);7hjz(235);7hiy(235);7hj6(235);7hjb(235);7hjv(235);7hjn(235);... | 9dw2(235);9dwa(192);9dwb(192);9dwc(192) | 7hk3(0.9897000194);7hj9(0.9952999949);7hjm(0.9941999912);7hjt(0.992299974);7hje(0.9908999801);7hj1(0.9747999907);7hja(0.9900000095);7hjx(0.9878000021);7hj7(0.994599998);7hjw(0.9929000139);7hjd(0.994599998);7hj6(0.9954000115);7hk4(0.983799994);7hj4(0.989199996);7hjk(0.9908000231);7hj5(0.9858000278);7hjr(0.9926000237);7h... | null | 7hjx(235) | 9dw2(235) | 7hj8(0.9966999888) | 2yev(0.6856999993) | 1.20.120.160;1.20.58.740;1.20.58.60;1.20.120.400;1.20.120.360;1.20.1270.410;1.20.120.220;1.20.1440.150;1.20.120.290;1.20.58.810;1.20.120.20;1.20.120.580;1.20.120.330;1.20.120.1370;1.20.120.470;1.20.120.30;1.20.120.960;1.20.120.260;1.20.1270.50;1.20.1440.210;1.20.120.50;1.20.120.1060;1.20.58.70;1.20.120.440;1.20.1440.60... | null |
6x9z | 2021-02-17 | other | id:A;type:U;source:unknown;length:125;seq_nat:MEQKPGTLMVYVVVGYNTDNTVDVVGGAQYAVSPYLFLDVGYGWNNSSLNFLEVGGGVSYKVSPDLEPYVKAGFEYNTDNTIKPTAGAGALYRVSPNLALMVEYGWNNSSLQKVAIGIAYKVKD;seq_unnat:MEQKPGTLMVYVVVGYNTDNTVDVVGGAQYAVSPYLFLDVGYGWNNSSLNFLEVGGGVSYKVSPDLEPYVKAGFEYNTDNTIKPTAGAGALYRVSPNLALMVEYGWNNSSLQKVAIGIAYKVKD | 13,424.055 | H 3 | 51.083|51.083|116.710|90.000|90.000|120.000 | X-RAY DIFFRACTION | null | A.A. Vorobieva;P. White;B. Liang;J.E. Horne;A.K. Bera;C.M. Chow;S. Gerben;S. Marx;A. Kang;A.Q. Stiving;S.R. Harvey;D.C. Marx;G.N. Khan;K.G. Fleming;V.H. Wysocki;D.J. Brockwell;L.K. Tamm;S.E. Radford;D. Baker | "De novo design of transmembrane beta barrels", Science, 371 | 10.1126/science.abc8182|33602829|0038|1095-9203|SCIEAS | US | De novo design of transmembrane beta-barrels | de novo protein;transmembrane beta-barrels;de novo design | 6x1k(172);9fdg(84) | null | null | null | 6x1k(172) | 1qjp(44) | 6x1k(0.7128000259) | 3nb3(0.7343000174) | 2.40.128.350;2.40.128.380;2.40.128.360;2.40.128.220;2.40.128.30;2.40.128.340;2.40.128.270;2.40.128.80;2.20.25.110;2.40.128.480;2.40.160.90;2.40.128.10;2.40.128.640;2.40.128.420;2.40.128.320;2.20.130.10;2.40.128.20;2.40.370.10;2.40.128.180;2.40.160.20;2.70.130.10;2.40.128.160 | null |
6xeh | 2020-08-05 | other | id:A;type:D;source:synthetic construct;length:126;seq_nat:MGKVVFLSDDQEIIEEVSKKAEEEGYDIQTSNDKKEIIDRLKRRNIDMIIVKTEDKESISEIIKQVLDSGAKVLILSSDENIIESIRKQYPKVETRRAQDKEEVKDAVEEFLKEGGSLEHHHHHH;seq_unnat:MGKVVFLSDDQEIIEEVSKKAEEEGYDIQTSNDKKEIIDRLKRRNIDMIIVKTEDKESISEIIKQVLDSGAKVLILSSDENIIESIRKQYPKVETRRAQDKEEVKDAVEEFLKEGGSLEHHHHHH | 14,535.344 | null | ||||| | SOLUTION NMR | null | N. Koga;R. Koga;G. Liu;J. Castellanos;G.T. Montelione;D. Baker | To be published | |||| | null | Solution nmr structure of de novo designed rossmann 2x3 fold protein r2x3_168, northeast structural genomics consortium (nesg) target or386 | northeast structural genomics consortium;rosemann 2x3 fold nmr;structural genomics;psi-biology;de novo protein;nesg | 2l82(63);7kbq(58);2lv8(56);2kpo(56);2lvb(54);2lnd(53) | null | null | null | 2l82(63) | null | 8ju8(0.5611000061) | 2msw(0.6159999967) | 3.40.50.9100;3.40.50.280;3.40.50.11400;3.40.50.1860;3.40.50.720;3.40.50.11130;3.40.50.10330;3.40.50.2300;3.40.50.1970;3.40.50.360;3.40.50.10140;3.40.50.1220;3.40.50.10830;3.40.50.450;3.40.50.10190;3.40.50.300;3.40.50.10740;3.40.50.10090;3.40.50.10860;3.40.50.10490;3.40.50.10440;3.40.50.10150;3.40.50.510;3.40.50.261;3.4... | null |
6xh5 | 2021-06-02 | other | id:A,B,C,D,E,F;type:D;source:synthetic construct;length:363;seq_nat:MGHHHHHHGGSSEEEQERIRRILKEARKSGTEESLRQAIEDVAQLAKKSQDSEVLEEAIRVILRIAKESGSEEALRQAIRAVAEIAKEAQDSEVLEEAIRVILRIAKESGSEEALRQALRAVAEIAEEAKDERVRKEAVRVMLQIAKESGSKEAVKLAFEMILRVVRIIAVLRANSVEEAKEKALAVFEGGVLAIEITFTVPDADTVIKELSFLEKEGAIIGAGTVTSVEQCRKAVESGALFIVSPHLDEEI... | 39,119.957 | P 43 21 2 | 166.766|166.766|223.512|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | Y. Hsia;R. Mout;W. Sheffler;N.I. Edman;I. Vulovic;Y.J. Park;R.L. Redler;M.J. Bick;A.K. Bera;A. Courbet;A. Kang;T.J. Brunette;U. Nattermann;E. Tsai;A. Saleem;C.M. Chow;D. Ekiert;G. Bhabha;D. Veesler;D. Baker | "Design of multi-scale protein complexes by hierarchical building block fusion", Nat Commun, 12, 2294-2294 | 10.1038/s41467-021-22276-z|33863889||2041-1723| | UK | Hierarchical design of multi-scale protein complexes by combinatorial assembly of oligomeric helical bundle and repeat protein building blocks | de novo protein;helical fusion;de novo design | 9dne(328);9dnd(328);8far(315);8cut(314);8cus(314);8cwz(310);5cwj(216);9d92(89);9cc4(84);9dze(50) | 1wa3(353);1vlw(353);5kp9(340);7b3y(333);6p6f(320);2yw3(114);2yw4(114);2v81(106);2v82(106);4qcc(105);4e38(102);1eun(99);1eua(99);1fq0(99);1wau(98);1wbh(97);2c0a(97);1fwr(94);5im5(94);3vcr(93);6ovi(91);1vhc(90);1mxs(89);4bk9(85);5xse(84);5xsf(84) | null | null | 9dne(328) | 1wa3(353) | 9dnd(0.8871999979) | 1wa3(0.8981999755) | 1.25.40.250;1.20.930.10;3.20.20.10;3.20.20.390;3.20.20.380;1.25.40.410;3.20.20.150;1.25.40.90;1.25.10.10;1.25.40.550;1.25.40.60;3.20.20.70;1.25.40.240;3.20.20.140;1.25.40.750;1.25.40.40;1.25.40.70;3.20.20.120;1.25.40.580;1.25.40.850;1.25.40.290;1.25.40.450;1.25.60.10;3.20.20.80;3.20.20.220;1.25.40.10;1.10.1240.70;1.25.... | null |
6xi6 | 2021-06-02 | other | id:A;type:D;source:synthetic construct;length:275;seq_nat:GKELEIVARLQQLNIELARKLLEAVARLQELNIDLVRKTSELTDEKTIREEIRKVKEESKRIVEEAEQEIRKAEAESLRLTAEAAADAARKAALRMGDERVRRLAAELVRLAQEAAEEATRDPNSSDQNEALRLIILAIEAAVRALDKAIEKGDPEDRERAREMVRAAVRAAELVQRYPSASAANEALKALVAAIDEGDKDAARCAEELVEQAEEALRKKNPEEARAVYEAARDVLEALQRLEEAKRRGDEEERREAEERLR... | 30,783.764 | H 3 | 101.970|101.970|78.444|90.000|90.000|120.000 | X-RAY DIFFRACTION | null | Y. Hsia;R. Mout;W. Sheffler;N.I. Edman;I. Vulovic;Y.J. Park;R.L. Redler;M.J. Bick;A.K. Bera;A. Courbet;A. Kang;T.J. Brunette;U. Nattermann;E. Tsai;A. Saleem;C.M. Chow;D. Ekiert;G. Bhabha;D. Veesler;D. Baker | "Design of multi-scale protein complexes by hierarchical building block fusion", Nat Commun, 12, 2294-2294 | 10.1038/s41467-021-22276-z|33863889||2041-1723| | UK | Hierarchical design of multi-scale protein complexes by combinatorial assembly of oligomeric helical bundle and repeat protein building blocks | de novo protein;helical fusion;de novo design | 5cwp(143);6n4n(139);6xss(134);7unj(129);8f6r(127);5izs(111);8evm(83);5cwo(76);7jh5(74);7cbc(74);8fbi(62) | 9drl(297);6w2r(70) | null | null | 5cwp(143) | 9drl(297) | 5izs(0.8797000051) | 5uh7(0.6302999854) | 1.20.5.420;1.10.287.660;1.20.1270.20;1.10.287.3290;1.20.930.20;1.10.287.210;1.20.20.10;6.10.260.10;1.20.5.730;1.20.1270.430;6.10.250.2740;1.20.1270.50;1.20.81.10;6.10.140.1460;6.10.250.1010;1.10.8.950;6.10.140.1720;1.20.81.20;1.20.1440.60;1.10.287.850;1.10.287.380;1.10.287.3610;1.10.287.1060;1.10.287.160;1.10.287.1240;... | null |
6xns | 2020-12-23 | other | id:A,B,C,D,E,F;type:D;source:synthetic construct;length:344;seq_nat:MGDRSDHAKKLKTFLENLRRHLDRLDKHIKQLRDILSENPEDERVKDVIDLSERSVRIVKTVIKIFEDSVRKLLKQINKEAEELAKSPDPEDLKRAVELAEAVVRADPGSNLSKKALEIILRAAAELAKLPDPDALAAAARAASKVQQEQPGSNLAKAAQEIMRQASRAAEEAARRAKETLEKAEKDGDPETALKAVETVVKVARALNQIATMAGSEEAQERAARVASEAARLAERVLELAEKQGDPEVARR... | 38,155.633 | P 2 21 21 | 112.135|145.250|161.896|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | Y. Hsia;R. Mout;W. Sheffler;N.I. Edman;I. Vulovic;Y.J. Park;R.L. Redler;M.J. Bick;A.K. Bera;A. Courbet;A. Kang;T.J. Brunette;U. Nattermann;E. Tsai;A. Saleem;C.M. Chow;D. Ekiert;G. Bhabha;D. Veesler;D. Baker | "Design of multi-scale protein complexes by hierarchical building block fusion", Nat Commun, 12, 2294-2294 | 10.1038/s41467-021-22276-z|33863889||2041-1723| | UK | C3_crown-05 | de novo protein;helical bundle repeat protein | 5cwm(128);5cwk(123);6xt4(122);6dlc(121);7mwr(116);6e9t(115);6e9y(107);6e9z(101);6e9v(93);7mwq(91);8f6q(64);8fbo(64);9dze(64);5cwn(60);8e0o(58);8f6r(55);8fit(53);8utm(53);5cwp(52) | 6w2q(98);9drl(91) | null | null | 5cwm(128) | 6w2q(98) | 1jm0(0.8154000044) | 1lrz(0.804799974) | 1.10.287.110;1.10.287.1520;1.20.58.160;6.10.140.790;1.10.287.690;6.10.140.1450;6.10.140.1740;1.20.5.1940;1.10.287.310;6.10.140.1960;1.20.58.150;4.10.860.20;1.10.287.1130;1.10.287.1890;1.20.120.1940;1.10.287.850;1.20.58.80;6.10.140.820;6.10.250.3080;1.20.58.600;1.10.287.170;1.25.40.970;1.20.58.220;6.10.250.2410;1.20.5.3... | null |
6xr1 | 2021-07-14 | other | id:A;type:D;source:synthetic construct;length:520;seq_nat:GNLELALKALQILVNAAYVLAEIARDRGNEELLEKAARLAEEAARQAEEIARQARKEGNLELALKALQILVNAAYVLAEIARDRGNEELLEKAARLAEEAARQAEEIARQARKEGNLELALKALQILVNAAYVLAEIARDRGNEELLEKAARLAEEAARQAEEIARQARKEGNLELALKALQILVNAAYVLAEIARDRGNEELLEKAARLAEEAARQAEEIARQARKEGNLELALKALQILVNAAYVLAEIARDRGNEELLE... | 56,704.422 | P 1 21 1 | 52.513|85.492|56.078|90.000|103.550|90.000 | X-RAY DIFFRACTION | null | J.P. Hallinan;L.A. Doyle;B.W. Shen;M.M. Gewe;B. Takushi;M.A. Kennedy;D. Friend;J.M. Roberts;P. Bradley;B.L. Stoddard | "Design of functionalised circular tandem repeat proteins with longer repeat topologies and enhanced subunit contact surfaces", Commun Biol, 4, 1240-1240 | 10.1038/s42003-021-02766-y|34716407||2399-3642| | UK | Computationally designed right-handed alpha/alpha single-chain toroid with 9 repeats | de novo protein;toroid;computationally designed;helix-turn-helix;de novo | 6xr2(289);9dze(272);8e0n(228);8e0o(200);8flx(195);8e0m(171);8e12(166);8e0l(153);8v3b(148);8v2d(143);5cwo(95);8fbo(89);8evm(56);8e1e(54) | null | null | null | 6xr2(289) | null | 6xr2(0.7702000141) | 6e9r(0.4420999885) | 1.10.287.110;1.25.40.410;1.25.40.90;1.20.58.160;6.10.140.790;1.10.287.690;1.25.40.70;1.20.58.1910;1.20.58.150;1.20.1310.30;6.10.140.1480;1.10.287.610;4.10.860.20;1.20.58.1590;1.10.287.2500;1.20.58.2150;1.20.58.80;6.10.140.820;1.20.58.220;1.20.1280.20;1.10.287.170;1.20.58.1080;1.25.40.810;1.20.58.910;1.20.58.2070;6.10.1... | null |
6xr2 | 2021-07-14 | other | id:A,B,C,D,E,F;type:D;source:synthetic construct;length:174;seq_nat:GNLELALKALQILVNAAYVLAEIARDRGNEELLEKAARLAEEAARQAEEIARQARKEGNLELALKALQILVNAAYVLAEIARDRGNEELLEKAARLAEEAARQAEEIARQARKEGNLELALKALQILVNAAYVLAEIARDRGNEELLEKAARLAEEAARQAEEIARQARKEG;seq_unnat:GNLELALKALQILVNAAYVLAEIARDRGNEELLEKAARLAEEAARQAEEIARQARKEGNLELALKALQI... | 18,951.506 | P 1 21 1 | 57.647|78.930|112.694|90.000|93.820|90.000 | X-RAY DIFFRACTION | null | J.P. Hallinan;L.A. Doyle;B.W. Shen;M.M. Gewe;B. Takushi;M.A. Kennedy;D. Friend;J.M. Roberts;P. Bradley;B.L. Stoddard | "Design of functionalised circular tandem repeat proteins with longer repeat topologies and enhanced subunit contact surfaces", Commun Biol, 4, 1240-1240 | 10.1038/s42003-021-02766-y|34716407||2399-3642| | UK | Computationally designed right-handed alpha/alpha homotrimeric toroid with 3 repeats per subunit | de novo protein;toroid;computationally designed;helix-turn-helix;de novo | 6xr1(289);8e0n(226);9dze(224);8e0o(196);8flx(180);8e0m(166);8e12(164);8e0l(151);8v3b(139);8v2d(136);5cwo(77);8fbo(71) | null | null | null | 6xr1(289) | null | 6xr1(0.9412999749) | 2v6y(0.5525000095) | 1.10.287.110;1.10.287.1520;1.20.58.160;1.10.287.690;1.10.287.310;1.20.58.1190;6.10.140.1480;1.10.287.610;1.10.287.1890;1.20.58.80;1.20.58.600;1.20.58.220;6.10.140.820;1.10.287.170;1.20.1280.20;1.20.58.910;1.20.58.2070;6.10.280.160;6.10.140.1530;1.20.58.310;1.10.1240.10;1.10.287.660;1.20.58.320;1.10.287.3280;1.20.58.180... | null |
6xss | 2020-12-23 | other | id:A,B,C,D;type:D;source:synthetic construct;length:263;seq_nat:ASSWVMLGLLLSLLNRLSLAAEAYKKAIELDPNDALAWLLLGSVLLLLGREEEAEEAARKAIELKPEMDSARRLEGIIELIRRAREAAERAQEAAERTGDPRVRELARELKRLAQEAAEEVRRDPDSKDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRNPSSSDVNEALKLIVEAIDAAVRALEAAEKTGDPEVRELARELVRLAVEAAEEVQRNPSSEEVNEALKDIVKAIQEA... | 28,706.484 | P 1 | 1.00|1.00|1.00|90.00|90.00|90.00 | ELECTRON MICROSCOPY | null | Y. Hsia;R. Mout;W. Sheffler;N.I. Edman;I. Vulovic;Y.J. Park;R.L. Redler;M.J. Bick;A.K. Bera;A. Courbet;A. Kang;T.J. Brunette;U. Nattermann;E. Tsai;A. Saleem;C.M. Chow;D. Ekiert;G. Bhabha;D. Veesler;D. Baker | "Design of multi-scale protein complexes by hierarchical building block fusion", Nat Commun, 12, 2294-2294 | 10.1038/s41467-021-22276-z|33863889||2041-1723| | UK | Cryoem structure of designed helical fusion protein c4_nat_hfuse-7900 | helical repeat;de novo protein;helical bundle | 5cwp(295);6n4n(265);8f6r(258);7unj(229);6xi6(128);8cwz(110);8cut(110);8cus(110);8fwd(109);6b85(109);8far(107);8umr(60);8ump(60);8e55(55);7rkc(55);8tm9(55);8evm(55);8tlp(55);6vl6(51);5hrz(50) | 9drl(217);6w2r(109) | null | null | 5cwp(295) | 9drl(217) | 5cwp(0.8547000289) | 1hxi(0.80400002) | 1.10.287.110;1.10.1140.10;6.10.250.2850;6.10.140.790;6.10.140.480;1.10.287.690;1.10.287.650;6.10.140.360;1.25.40.40;1.25.40.70;1.20.1270.430;6.10.140.1480;1.20.1440.210;1.10.1900.10;4.10.860.20;1.20.58.730;1.25.40.440;1.20.58.80;6.10.140.820;1.25.40.970;1.20.1270.350;1.20.120.550;6.10.250.3300;1.10.8.130;1.10.287.410;6... | null |
6xt4 | 2020-12-23 | other | id:A;type:D;source:synthetic construct;length:274;seq_nat:MGHHHHHHGGDSLDMLEWSLGSNDEKEKLKELLKRAEELAKSPDPEDLKEAVRLAEEVVRERPGSNLAKKALEIILRAAEELAKLPDPKALIAAVLAAIKVVREQPGSNLAKKALEIILRAAEELAKLPDPLALAAAVVAATIVVLTQPGSELAKKALEIIERAAEELKKSPDPLAQLLAIAAEALVIALKSSSEETIKEMVKLTTLALLTSLLILILILLDLKEMLERLEKNPDKDVIVKVLKVIVKAIEASVLNQAISAI... | 29,379.666 | H 3 | 107.313|107.313|56.066|90.000|90.000|120.000 | X-RAY DIFFRACTION | null | Y. Hsia;R. Mout;W. Sheffler;N.I. Edman;I. Vulovic;Y.J. Park;R.L. Redler;M.J. Bick;A.K. Bera;A. Courbet;A. Kang;T.J. Brunette;U. Nattermann;E. Tsai;A. Saleem;C.M. Chow;D. Ekiert;G. Bhabha;D. Veesler;D. Baker | "Design of multi-scale protein complexes by hierarchical building block fusion", Nat Commun, 12, 2294-2294 | 10.1038/s41467-021-22276-z|33863889||2041-1723| | UK | C3_hd-1069 (1bh-69) - fusion protein of helical bundle and repeat protein | de novo protein;helical bundle repeat protein | 5cwk(228);7mwr(183);6xns(116);8fbk(97);8fbi(96);8fbn(86);8fbo(85);5j0j(72);8fbj(66);5cwl(53) | 6w2q(133);9drl(115) | null | null | 5cwk(228) | 6w2q(133) | 7mwr(0.8684999943) | 6w2q(0.5715000033) | 1.25.40.290;1.25.40.440;1.25.40.250;1.25.40.40;1.20.930.10;1.10.220.10;1.20.58.80;1.10.1240.10;1.25.10.10;1.25.40.970;1.25.40.10;1.10.3450.10;1.20.58.460;1.25.40.60;1.25.40.850 | null |
6xwi | 2020-04-15 | other | id:A;type:D;source:synthetic construct;length:71;seq_nat:ASPCDKQKNYIDKQLLPIVNKAGCSRPEEVEERIRRALKKMGDTSCFDEILKGLKEIKCGGSWLEHHHHHH;seq_unnat:ASPCDKQKNYIDKQLLPIVNKAGCSRPEEVEERIRRALKKMGDTSCFDEILKGLKEIKCGGSWLEHHHHHH | 8,209.471 | null | ||||| | SOLUTION NMR | null | F. Sesterhenn;C. Yang;J. Bonet;J.T. Cramer;X. Wen;Y. Wang;C.I. Chiang;L.A. Abriata;I. Kucharska;G. Castoro;S.S. Vollers;M. Galloux;E. Dheilly;S. Rosset;P. Corthesy;S. Georgeon;M. Villard;C.A. Richard;D. Descamps;T. Delgado;E. Oricchio;M.A. Rameix-Welti;V. Mas;S. Ervin;J.F. Eleouet;S. Riffault;J.T. Bates;J.P. Julien;Y. ... | "De novo protein design enables the precise induction of RSV-neutralizing antibodies", Science, 368 | 10.1126/science.aay5051|32409444|0038|1095-9203|SCIEAS | US | Solution nmr structure of the s0_2.126 designed protein | designed protein;de novo protein | 6s3d(158) | null | null | null | 6s3d(158) | null | 6s3d(0.6129000187) | 3s64(0.5097000003) | 1.10.10.10;1.10.10.410;1.10.10.60;1.10.390.40;1.10.60.20 | null |
6xxv | 2020-04-22 | other | id:A,D;type:N;source:Homo sapiens;length:254;seq_nat:MGCVAETGEFTREVQLVESGGGLAKPGGSLRLSCAASGFTFSPYWMYWVRQAPGKGLEWVSVINSGGGITYYTDSVKGRFTISRENAKNTLYLQMDSLRPEDTAVYYCVRDRTYYSGVYYTEDGLDSWGQGVLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDGTKHHHHHH;seq_unnat:MGCVA... | 27,005.182 | C 1 2 1 | 241.019|66.890|91.384|90.000|110.811|90.000 | X-RAY DIFFRACTION | null | F. Sesterhenn;C. Yang;J. Bonet;J.T. Cramer;X. Wen;Y. Wang;C.I. Chiang;L.A. Abriata;I. Kucharska;G. Castoro;S.S. Vollers;M. Galloux;E. Dheilly;S. Rosset;P. Corthesy;S. Georgeon;M. Villard;C.A. Richard;D. Descamps;T. Delgado;E. Oricchio;M.A. Rameix-Welti;V. Mas;S. Ervin;J.F. Eleouet;S. Riffault;J.T. Bates;J.P. Julien;Y. ... | "De novo protein design enables the precise induction of RSV-neutralizing antibodies", Science, 368 | 10.1126/science.aay5051|32409444|0038|1095-9203|SCIEAS | US | Crystal structure of a computationally designed immunogen s2_1.2 in complex with its elicited antibody c57 | immune system;immunogen;epitope scaffold;de novo designed protein | null | null | null | null | null | null | null | null | null | null |
6xxz | 2020-03-18 | other | id:A,B;type:U;source:unknown;length:32;seq_nat:XGEIKQQLAEIKQQLAEIKWQLAEIKQQLAGX;seq_unnat:(ACE)GEIKQQLAEIKQQLAEIKWQLAEIKQQLAG(NH2) | 3,462.024 | C 2 2 2 | 47.560|50.840|43.940|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | C.L. Edgell;N.J. Savery;D.N. Woolfson | "RobustDe Novo-Designed Homotetrameric Coiled Coils", Biochemistry, 59, 1087-1092 | 10.1021/acs.biochem.0c00082|32133841|0033|0006-2960|BICHAW | US | Crystal structure of a de novo designed parallel four-helix coiled coil, 2-ek-4 | tetramer;de novo protein;parallel;coiled coil | null | null | 8a09(0.9575999975);4pn9(1);6eiz(0.9911000133);7bim(1);5ez9(1);6xy1(1);8b15(0.9516999722);8b16(1);4pna(1);7nfg(1);5ez8(1);6zt1(0.9973999858);7bas(0.9986000061);7nfj(1);7nfo(0.9858999848);7a1t(1);5eza(1);6yb2(1);7nff(0.9973000288);7nfi(1);7nfl(1);7nfm(1);7bav(1);7qwa(1);7qwd(1);7qwe(1);7qwb(0.9575999975);7nfn(1);6g6f(1);... | null | 6xxz(0) | null | 4pn9(1) | null | null | null |
6xy0 | 2020-03-18 | other | id:A,B,C,D;type:U;source:unknown;length:32;seq_nat:XGAIQQELKAIQQELKAIQWELKAIQQELKGX;seq_unnat:(ACE)GAIQQELKAIQQELKAIQWELKAIQQELKG(NH2) | 3,462.024 | P 1 21 1 | 29.460|48.550|36.570|90.000|96.190|90.000 | X-RAY DIFFRACTION | null | C.L. Edgell;N.J. Savery;D.N. Woolfson | "RobustDe Novo-Designed Homotetrameric Coiled Coils", Biochemistry, 59, 1087-1092 | 10.1021/acs.biochem.0c00082|32133841|0033|0006-2960|BICHAW | US | Crystal structure of a de novo designed parallel four-helix coiled coil, 3-ek-4 | tetramer;de novo protein;parallel;coiled coil | null | null | 4pn9(0.9973000288);6xy1(1);4pna(1);6eiz(0.9987999797);7bim(1);7nfg(1);5ez8(1);7nff(1);7nfi(1);7nfj(1);7nfl(1);7nfo(0.9805999994);7qwa(1);6zt1(1);7a1t(1);7nfm(1);7qwd(1);7qwe(1);6yb2(1);8b16(1);6g6f(1);6g6g(1);3s0r(0.980700016);5et3(0.9986000061);5hkn(1);7bas(1);7bav(1);7qwb(0.9595999718);5hkr(0.992200017);7nfk(0.957599... | null | 6xy0(0) | null | 4pna(1) | 4kvt(0.897300005) | 6.10.250.770;1.20.5.420;1.20.5.430;1.20.5.2620;1.20.5.1450;6.10.250.1140;1.20.5.700;6.10.250.500;6.10.250.2150;6.10.250.200;6.10.250.880;6.10.250.2720;6.10.250.270;6.10.250.2060;6.10.250.1090;1.20.5.3960;6.10.250.2370;6.10.250.1210;6.10.250.1020;6.10.250.1440;6.10.250.10;1.20.5.1610;6.10.250.160;6.10.250.850;6.10.250.4... | null |
6xy1 | 2020-03-18 | other | id:A,B,C,D;type:U;source:unknown;length:32;seq_nat:XGEIQKQLKEIQKQLKEIQWQLKEIQKQLKGX;seq_unnat:(ACE)GEIQKQLKEIQKQLKEIQWQLKEIQKQLKG(NH2) | 3,693.381 | P 43 | 53.520|53.520|50.280|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | C.L. Edgell;N.J. Savery;D.N. Woolfson | "RobustDe Novo-Designed Homotetrameric Coiled Coils", Biochemistry, 59, 1087-1092 | 10.1021/acs.biochem.0c00082|32133841|0033|0006-2960|BICHAW | US | Crystal structure of a de novo designed parallel four-helix coiled coil, 4-ke-4 | tetramer;de novo protein;parallel;coiled coil | null | null | 6eiz(0.9983999729);7nfo(0.9933999777);8a09(0.9789000154);7nfj(1);7nfl(1);4pn9(1);7nfh(0.9973999858);7bav(1);4pna(1);7bim(1);7qwa(1);8b16(1);5ez8(1);7bas(1);7nfk(0.9789000154);7a1t(1);8b15(0.9764999747);6zt1(0.9984999895);7qwb(0.9789000154);7qwe(1);7qwd(1);5ez9(1);6eik(0.9789000154);7nfn(1);6g6f(1);6g6g(1);7bau(0.992600... | null | 6xy1(0) | null | 4pna(1) | null | 6.10.250.770;1.20.5.420;1.20.5.430;1.20.5.2620;1.20.5.1450;6.10.250.1140;1.20.5.700;6.10.250.500;6.10.250.2150;6.10.250.200;6.10.250.880;6.10.250.2720;6.10.250.270;6.10.250.2060;6.10.250.1090;1.20.5.3960;6.10.250.2370;6.10.250.1020;6.10.250.1440;6.10.250.10;1.20.5.1610;6.10.250.160;6.10.250.850;6.10.250.490;6.10.250.38... | null |
6y06 | 2020-03-18 | other | id:A;type:D;source:synthetic construct;length:139;seq_nat:MGSSHHHHHHSSGLVPRGSHMEAAAAARDESAYLKLQEQMRKIDADAAALSETRTIEELDTFKLDVADFVTTVVQLAEELEHRFGRNRRGRTEIYKIVKEVDRKLLDLTDAVLAKEKKGEDILNMVAEIKALLINIYK;seq_unnat:MGSSHHHHHHSSGLVPRGSHMEAAAAARDESAYLKLQEQMRKIDADAAALSETRTIEELDTFKLDVADFVTTVVQLAEELEHRFGRNRRGRTEIYKIVKEVDRKLLDLTDAVL... | 15,645.854 | null | ||||| | SOLUTION NMR | null | B. Hernandez Alvarez;J. Skokowa;M. Coles;P. Mir;M. Nasri;K. Maksymenko;L. Weidmann;K.W. Rogers;K. Welte;A.N. Lupas;P. Muller;M. ElGamacy | "Design of novel granulopoietic proteins by topological rescaffolding", Plos Biol., 18, e3000919-e3000919 | 10.1371/journal.pbio.3000919|33351791||1545-7885| | US | Moevan: a designed granulopoietic protein by topological rescaffolding | protein design;de novo protein;gcsf mimic;receptor modulator | 6y07(72);9rgx(51);9rgv(51);9rgz(51);9rgy(51);9rgw(51);6vga(51);8qad(51);6ff6(51);6vgb(50);5dra(50);4yc5(50);5di5(50);5dn0(50);5dns(50);5dqa(50);5dzb(50);4yfo(50);8ety(50);7zp7(50) | 2qup(133);5un5(90);5un6(90);4q20(61);8zt4(57);4iwx(57);4iwy(57);5eqn(57);6k67(56);3rg6(56);2wvw(56);3hyb(56);2peo(56);1r9g(56);5uto(56);4hhe(56);4qoz(55);4l8r(55);4wk1(55);4wk3(55);6o3w(55);6o3x(55);6o3y(55);2kn6(55);2dch(55);3du1(55);8s5g(55);1yb2(55);3ois(55);3h4w(55);3h4x(55);6l6w(55);6l6x(55);4dfy(55);4dg3(55);4kbj... | null | null | 6y07(72) | 2qup(133) | 9n0k(0.5863999724) | 2qup(0.7930999994) | 1.20.120.160;1.20.120.360;1.20.120.220;1.20.120.290;1.20.120.20;1.20.120.330;1.20.120.1370;1.20.120.30;1.20.1270.430;1.10.246.120;1.20.120.260;1.20.1270.50;1.20.1440.210;1.20.120.50;1.20.120.1940;1.20.1440.60;1.20.120.440;1.10.8.1160;1.20.120.520;1.20.58.220;1.20.1280.20;1.20.120.340;1.20.120.490;1.20.120.1740;1.10.287... | null |
6y07 | 2020-03-18 | other | id:A;type:D;source:synthetic construct;length:177;seq_nat:MGSSHHHHHHSSGLVPRGSHMMTSDYIIEQIQRKQEEARLKVEEMERKLEAVKEASKRGVSSDQLLNLILDLADIITTLIQIIEESNEAIKELIKNQKGPTSDYIIEQIQRDQEEARKKVEEAEERLERVKEASKRGVSSDQLLDLIRELAEIIEELIRIIRRSNEAIKELIKNQ;seq_unnat:MGSSHHHHHHSSGLVPRGSHMMTSDYIIEQIQRKQEEARLKVEEMERKLEAVKEASKRGVSSDQLLNLILDLADII... | 20,297.09 | null | ||||| | SOLUTION NMR | null | B. Hernandez Alvarez;J. Skokowa;M. Coles;P. Mir;M. Nasri;K. Maksymenko;L. Weidmann;K.W. Rogers;K. Welte;A.N. Lupas;P. Muller;M. ElGamacy | "Design of novel granulopoietic proteins by topological rescaffolding", Plos Biol., 18, e3000919-e3000919 | 10.1371/journal.pbio.3000919|33351791||1545-7885| | US | Designing a granulopoietic protein by topological rescaffolding 1: sohair | protein design;de novo protein;receptor modulator;gcsf analog | 5j73(133);6y06(74);8qad(61);6vga(56);8qae(56);6vgb(54);6vg7(54);8qaf(53);6tj1(53);9rgz(52);5dra(52);4yc5(52);5di5(52);5dn0(52);5dns(52);5dqa(52);5dzb(52);4yfo(52);9rgx(51);9rgv(51);9rgy(51);9rgw(51);4yxy(51);8hdu(50);8j1w(50);6ff6(50);8ety(50) | 5xnc(67);6j26(67);5xnf(67);5xnh(67);4d2w(65);4d2p(65);4ump(65);4umq(65);4umr(65);4umt(65);4umu(65);4d2t(65);4d2v(65);2q5r(64);2jgv(64);2jg1(63);6ouv(63);6ouw(63);2yrf(62);2yvk(62);3q5w(60);3q5x(60);4e7o(59);4e7p(59);6o3w(59);6o3x(59);6o3y(59);2cdn(59);3v6a(59);3n6r(59);6kz6(58);4hye(58);6oxh(58);4luq(58);2ews(57);4x9x(... | null | null | 5j73(133) | 5xnc(67) | 9min(0.6679999828) | 3ma9(0.5861999989) | 1.20.58.60;1.20.120.290;1.20.1440.70;1.10.8.930;1.20.120.20;1.20.120.330;1.20.120.580;1.20.120.1370;1.20.120.30;1.20.120.180;1.20.120.260;1.20.1270.50;1.20.120.560;1.20.1440.210;1.20.120.50;1.20.120.1940;1.20.120.1060;1.20.58.70;1.20.120.440;1.20.120.520;1.20.120.1420;1.20.120.430;1.20.58.220;1.20.140.50;1.20.120.340;1... | null |
6y7n | 2020-12-16 | other | id:A,B;type:D;source:synthetic construct;length:329;seq_nat:GSHMGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAVTS... | 35,024.23 | P 1 21 1 | 73.586|60.929|73.613|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | L. Vandebroek;H. Noguchi;K. Kamata;J.R.H. Tame;T.N. Parac-Vogt;A.R.D. Voet | "Shape and Size Complementarity-Induced Formation of Supramolecular Protein Assemblies with Metal-Oxo Clusters", Cryst.Growth Des. | 10.1021/acs.cgd.0c01571|||1528-7505| | US | The crystal structure of the eight-bladed symmetrical designer protein tako8 in the presence of tellurotungstic anderson-evans (tew) | packing;polyoxometalate;tew;de novo protein;pom;designer protein | 6g6n(649);6g6m(649);6y7p(649);6y7o(646);6g6o(440);6g6p(440);7bie(243);6g6q(227);7bid(227);7big(223);7bif(218);6r5z(96) | 5v4b(323);2ovp(323);2ovq(323);2ovr(323);2ymu(255);5mzh(246);6wnx(243);6m90(243);6m91(243);6m92(243);6m93(243);6m94(243);1p22(243);6ttu(243);5nnz(242);3emh(205);9kfm(204);9kfn(204);9kfo(204);9l0t(204);9l0v(204);4a7j(204);2h9p(204);2h9l(204);5m23(204);5m25(204);6ufx(203);6dy7(203);6u8l(203);6u5m(203);6uhy(203);6uoz(203);... | 6g6m(0.9933999777);6y7p(0.9695000052);6g6n(0.9828000069);6y7o(0.9696000218) | null | 6g6n(649) | 5v4b(323) | 6g6m(0.9933999777) | 5mzh(0.8701000214) | 2.130.10.150;2.40.10.500;2.130.10.120;2.130.10.80;2.40.128.190;2.120.10.80;2.130.10.130;2.120.10.60;2.130.10.110;2.120.10.70;2.40.128.630;2.130.10.10;2.20.25.650;2.130.10.30;2.120.10.10;2.120.10.30 | null |
6y7o | 2020-12-16 | other | id:A,B,C;type:D;source:synthetic construct;length:328;seq_nat:GSHMGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAV... | 34,981.203 | C 1 2 1 | 94.554|133.505|81.753|90.000|125.270|90.000 | X-RAY DIFFRACTION | null | L. Vandebroek;H. Noguchi;K. Kamata;J.R.H. Tame;T.N. Parac-Vogt;A.R.D. Voet | "Shape and Size Complementarity-Induced Formation of Supramolecular Protein Assemblies with Metal-Oxo Clusters", Cryst.Growth Des. | 10.1021/acs.cgd.0c01571|||1528-7505| | US | The complex between the eight-bladed symmetrical designer protein tako8 and the silicotungstic acid keggin (sta) | polyoxometalate;sta;hybrid;framework;de novo protein;pom;designer protein | 6g6n(645);6g6m(645);6y7n(645);6y7p(645);6g6o(441);6g6p(441);7bie(242);6g6q(227);7bid(227);7big(223);7bif(218);6r5z(96) | 5v4b(323);2ovp(323);2ovq(323);2ovr(323);2ymu(254);5mzh(246);6wnx(243);6m90(243);6m91(243);6m92(243);6m93(243);6m94(243);1p22(243);6ttu(243);5nnz(242);3emh(205);9kfm(204);9kfn(204);9kfo(204);9l0t(204);9l0v(204);4a7j(204);2h9p(204);2h9l(204);5m23(204);5m25(204);6ufx(203);6dy7(203);6u8l(203);6u5m(203);6uhy(203);6uoz(203);... | 6g6m(0.9674999714);6y7p(0.9646999836);6y7n(0.9728000164);6g6n(0.9674000144) | null | 6g6n(645) | 5v4b(323) | 6y7n(0.9728000164) | 5mzh(0.8633000255) | 2.40.10.500;2.40.10.360;2.20.25.650;2.40.128.630;2.40.128.650;2.120.10.30 | null |
6y7p | 2020-12-16 | other | id:A;type:D;source:synthetic construct;length:329;seq_nat:GSHMGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAVTSLQFNDNIVVSGSDDSTVKVWDIKTGQSLRTLQGHQSAVTSLQ... | 35,024.23 | C 1 2 1 | 107.347|72.799|54.288|90.000|120.380|90.000 | X-RAY DIFFRACTION | null | L. Vandebroek;H. Noguchi;K. Kamata;J.R.H. Tame;T.N. Parac-Vogt;A.R.D. Voet | "Shape and Size Complementarity-Induced Formation of Supramolecular Protein Assemblies with Metal-Oxo Clusters", Cryst.Growth Des. | 10.1021/acs.cgd.0c01571|||1528-7505| | US | The complex between the eight-bladed symmetrical designer protein tako8 and 1:2 zirconium(iv) wells-dawson (zrwd) | polyoxometalate;hybrid;framework;zrwd;de novo protein;pom;designer protein | 6g6n(649);6g6m(649);6y7n(649);6y7o(646);6g6o(440);6g6p(440);7bie(243);6g6q(227);7bid(227);7big(223);7bif(218);6r5z(96) | 5v4b(323);2ovp(323);2ovq(323);2ovr(323);2ymu(255);5mzh(246);6wnx(243);6m90(243);6m91(243);6m92(243);6m93(243);6m94(243);1p22(243);6ttu(243);5nnz(242);3emh(205);9kfm(204);9kfn(204);9kfo(204);9l0t(204);9l0v(204);4a7j(204);2h9p(204);2h9l(204);5m23(204);5m25(204);6ufx(203);6dy7(203);6u8l(203);6u5m(203);6uhy(203);6uoz(203);... | 6g6m(0.9736999869);6y7n(0.9714999795);6g6n(0.977699995);6y7o(0.9635999799) | null | 6g6n(649) | 5v4b(323) | 6g6n(0.977699995) | 5mzh(0.8715999722) | 2.40.128.630;2.40.128.660;2.40.128.650 | null |
6yaz | 2021-04-07 | other | id:A,B,C,D,E,F,G,H,I,J,K,L;type:U;source:unknown;length:39;seq_nat:XGEIAQATKEIAQATKEIAKATKEIAWATKEIAQATKGX;seq_unnat:(ACE)GEIAQATKEIAQATKEIAKATKEIAWATKEIAQATKG(NH2) | 3,929.494 | P 1 | 40.136|43.307|83.024|101.530|97.690|90.210 | X-RAY DIFFRACTION | null | A.J. Scott;A. Niitsu;H.T. Kratochvil;E.J.M. Lang;J.T. Sengel;W.M. Dawson;K.R. Mahendran;M. Mravic;A.R. Thomson;R.L. Brady;L. Liu;A.J. Mulholland;H. Bayley;W.F. DeGrado;M.I. Wallace;D.N. Woolfson | "Constructing ion channels from water-soluble alpha-helical barrels", Nat.Chem., 13, 643-650 | 10.1038/s41557-021-00688-0|33972753||1755-4349| | UK | Crystal structure of a parallel hexameric coiled coil cc-type2-(taid)5 | de novo peptide;alpha-helical barrel;designed protein;de novo protein;designed peptide;coiled coil | null | null | 6yb0(1);1kdd(0.9761000276) | null | 6yaz(0) | null | 6yb0(1) | null | 6.10.250.770;6.10.250.3050;1.20.5.420;6.10.250.1610;6.10.250.2070;1.20.5.930;1.20.5.430;6.10.250.810;1.20.5.1450;1.20.5.750;1.20.5.700;6.10.250.2150;6.10.250.2720;1.10.287.210;6.10.250.2060;1.20.5.470;6.10.250.110;1.20.5.520;6.10.250.1020;6.10.250.1440;6.10.250.10;1.20.5.1610;6.10.250.950;6.10.250.850;6.10.250.380;1.20... | null |
6yb0 | 2021-04-07 | other | id:A,B,C,D,E,F,G,H,I,J,K,L;type:U;source:unknown;length:39;seq_nat:XGEIAQALKEIAQALKESAKATKESAWATKEIAQALKGX;seq_unnat:(ACE)GEIAQALKEIAQALKESAKATKESAWATKEIAQALKG(NH2) | 3,913.496 | P 21 21 21 | 76.404|81.566|90.625|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | A.J. Scott;A. Niitsu;H.T. Kratochvil;E.J.M. Lang;J.T. Sengel;W.M. Dawson;K.R. Mahendran;M. Mravic;A.R. Thomson;R.L. Brady;L. Liu;A.J. Mulholland;H. Bayley;W.F. DeGrado;M.I. Wallace;D.N. Woolfson | "Constructing ion channels from water-soluble alpha-helical barrels", Nat.Chem., 13, 643-650 | 10.1038/s41557-021-00688-0|33972753||1755-4349| | UK | Crystal structure of a parallel hexameric coiled coil cc-type2-(tasd)2 | de novo peptide;alpha-helical barrel;designed protein;de novo protein;designed peptide;coiled coil | null | null | 6yaz(1) | null | 6yb0(0) | null | 6yaz(1) | null | 6.10.250.770;6.10.250.3050;1.20.5.420;1.20.5.930;6.10.250.2070;6.10.250.1610;1.20.5.430;6.10.250.810;1.20.5.1450;1.20.5.750;1.20.5.700;6.10.250.2150;6.10.250.2720;1.10.287.210;6.10.250.2060;6.10.250.110;1.20.5.470;1.20.5.520;1.20.5.730;6.10.250.1020;6.10.250.1440;6.10.250.10;1.20.5.1610;6.10.250.850;6.10.250.380;1.20.5... | null |
6yb1 | 2021-04-07 | other | id:A,B,C,D;type:U;source:unknown;length:33;seq_nat:XGKKSAWATVISALATVISALATVISAWATVGX;seq_unnat:(ACE)GKKSAWATVISALATVISALATVISAWATVG(NH2) | 3,070.605 | P 31 1 2 | 47.864|47.864|103.153|90.000|90.000|120.000 | X-RAY DIFFRACTION | null | A.J. Scott;A. Niitsu;H.T. Kratochvil;E.J.M. Lang;J.T. Sengel;W.M. Dawson;K.R. Mahendran;M. Mravic;A.R. Thomson;R.L. Brady;L. Liu;A.J. Mulholland;H. Bayley;W.F. DeGrado;M.I. Wallace;D.N. Woolfson | "Constructing ion channels from water-soluble alpha-helical barrels", Nat.Chem., 13, 643-650 | 10.1038/s41557-021-00688-0|33972753||1755-4349| | UK | Crystal structure of an antiparallel octameric transmembrane coiled coil k2-cctm-vbic | de novo membrane protein;de novo protein;coiled coil;antiparallel coiled coil | null | null | null | null | 6yb1(0) | null | 6yb1(0) | null | 6.10.250.770;1.20.5.420;1.20.5.2620;1.20.5.1450;1.20.5.700;6.10.250.500;6.10.250.2150;6.10.250.200;6.10.250.880;1.20.5.3960;6.10.250.2720;6.10.250.2060;6.10.250.1090;6.10.250.2370;6.10.250.1210;6.10.250.1020;6.10.250.1440;1.20.5.1610;6.10.250.80;6.10.250.850;6.10.250.490;6.10.250.380;6.10.250.160;6.10.250.2230;1.20.5.1... | null |
6yb2 | 2021-04-07 | other | id:A,B,C,D,E,F;type:U;source:unknown;length:32;seq_nat:XGEIAQALKEIAKATKEIAWATKEIAQALKGX;seq_unnat:(ACE)GEIAQALKEIAKATKEIAWATKEIAQALKG(NH2) | 3,210.763 | P 21 21 21 | 31.010|55.990|90.630|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | A.J. Scott;A. Niitsu;H.T. Kratochvil;E.J.M. Lang;J.T. Sengel;W.M. Dawson;K.R. Mahendran;M. Mravic;A.R. Thomson;R.L. Brady;L. Liu;A.J. Mulholland;H. Bayley;W.F. DeGrado;M.I. Wallace;D.N. Woolfson | "Constructing ion channels from water-soluble alpha-helical barrels", Nat.Chem., 13, 643-650 | 10.1038/s41557-021-00688-0|33972753||1755-4349| | UK | Crystal structure of a parallel hexameric coiled coil cc-type2-(taid)2 | de novo peptide;alpha-helical barrel;designed protein;de novo protein;designed peptide;coiled coil | null | null | 6yaz(0.9585000277);7nfg(1);4pn9(1);6eiz(1);7nfm(1);5ez8(1);6g6g(1);6xy1(1);6yb0(0.9771999717);8a09(0.9575999975);4pna(1);5ez9(1);6g6e(1);7bim(1);7nfh(0.9728000164);7nfj(1);7nfn(1);7bas(1);7bav(1);7nff(1);7nfi(1);7nfl(1);7qwa(1);7qwd(1);7qwe(1);8b16(1);5eza(1);7a1t(1);7nfo(0.977699995);6zt1(1);7nfk(0.9575999975);7qwb(0.... | null | 6yb2(0) | null | 7nfg(1) | null | 6.10.250.770;1.20.5.420;1.20.5.430;1.20.5.2620;1.20.5.1450;6.10.250.1140;1.20.5.700;6.10.250.500;6.10.250.2150;6.10.250.200;6.10.250.880;6.10.250.2720;6.10.250.270;6.10.250.2060;6.10.250.1090;1.20.5.3960;1.20.5.470;6.10.250.2370;6.10.250.1210;6.10.250.1020;6.10.250.1440;6.10.250.10;1.20.5.1610;6.10.250.160;6.10.250.850... | null |
6ypi | 2021-04-28 | other | id:A;type:D;source:synthetic construct;length:98;seq_nat:GSGSPLAQQIKNILSLIGQADAAGRMDEVRTLQLNLCQLMVEYFQQSDGDGGSPLAQQIQNIHSFGHQAWAAGRLDEVRRIQENLYQLMKEYFQQSD;seq_unnat:GSGSPLAQQIKNILSLIGQADAAGRMDEVRTLQLNLCQLMVEYFQQSDGDGGSPLAQQIQNIHSFGHQAWAAGRLDEVRRIQENLYQLMKEYFQQSD | 10,875.097 | C 1 2 1 | 62.237|35.015|43.229|90.000|109.810|90.000 | X-RAY DIFFRACTION | null | S. Basler;S. Studer;Y. Zou;T. Mori;Y. Ota;A. Camus;H.A. Bunzel;R.C. Helgeson;K.N. Houk;G. Jimenez-Oses;D. Hilvert | "Efficient Lewis acid catalysis of an abiological reaction in a de novo protein scaffold", Nat.Chem., 13, 231-235 | 10.1038/s41557-020-00628-4|33526894||1755-4349| | UK | Structure of the engineered metallo-diels-alderase da7 w16g,k58q,l77r,t78r | de novo protein;de novo diels-alderase | 7bww(189);5od1(143);5od9(141);9s7r(124);3v1a(78);3v1d(78);3v1c(78);3v1b(78);3v1f(77);3v1e(75) | 1yzm(55);1z0k(53) | 7bww(0.9713000059) | null | 7bww(189) | 1yzm(55) | 7bww(0.9713000059) | 1z0k(0.7549999952) | 1.10.246.10;1.20.120.160;1.10.167.10;1.20.272.10 | null |
6yqx | 2021-07-21 | other | id:A;type:D;source:synthetic construct;length:196;seq_nat:MDVDEMLKQVEILRRLGAKQIAVRSDDWRILQEALKKGGDILIVDATDVDEMLKQVEILRRLGAKQIAVRSDDWRILQEALKKGGDILIVDATDVDEMLKQVEILRRLGAKQIAVRSDDWRILQEALKKGGDILIVDATDVDEMLKQVEILRRLGAKQIAVRSDDWRILQEALKKGGDILIVDATGLEHHHHHH;seq_unnat:MDVDEMLKQVEILRRLGAKQIAVRSDDWRILQEALKKGGDILIVDATDVDEMLKQVE... | 22,117.68 | P 32 | 51.722|51.722|63.968|90.000|90.000|120.000 | X-RAY DIFFRACTION | null | S. Romero-Romero;M. Costas;D.A. Silva Manzano;S. Kordes;E. Rojas-Ortega;C. Tapia;Y. Guerra;S. Shanmugaratnam;A. Rodriguez-Romero;D. Baker;B. Hocker;D.A. Fernandez-Velasco | "The Stability Landscape of de novo TIM Barrels Explored by a Modular Design Approach", J.Mol.Biol., 433, 167153-167153 | 10.1016/j.jmb.2021.167153|34271011|0070|1089-8638|JMOBAK | UK | Crystal structure of denovotim13, a de novo designed tim barrel | epistasis;tim barrel;(beta/alfa)8 barrel;de novo protein design;stability landscape;de novo protein | 7p12(373);6wvs(338);6z2i(334);7ot8(315);7osv(315);6yqy(274);5bvl(271);7ot7(268);7osu(268);7a8s(258);6wxp(153);6wxo(153);9qul(152);9quo(152);9qud(151);9qui(151);9quc(151);6zv9(151);7mcc(121);7smj(114);7mcd(92);9qup(61);7uek(57) | null | null | null | 7p12(373) | null | 7p12(0.9196000099) | 1vc4(0.6474999785) | 3.20.20.10;3.20.20.60;3.20.20.390;3.20.20.380;3.20.20.120;3.20.20.150;3.20.20.220;3.20.20.80;3.20.20.70;3.20.20.370;3.20.20.140 | null |
6yqy | 2021-07-21 | other | id:A;type:D;source:synthetic construct;length:196;seq_nat:MDKDEAWKQVEQLRREGATQIAYRSDDWRDLKEAWKKGADILIVDATDKDEAWKQVEQLRREGATQIAYRSDDWRDLKEAWKKGADILIVDATDKDEAWKQVEQLRREGATQIAYRSDDWRDLKEAWKKGADILIVDATDKDEAWKQVEQLRREGATQIAYRSDDWRDLKEAWKKGADILIVDATGLEHHHHHH;seq_unnat:MDKDEAWKQVEQLRREGATQIAYRSDDWRDLKEAWKKGADILIVDATDKDEAWKQVE... | 22,917.422 | P 41 21 2 | 50.452|50.452|132.412|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | S. Romero-Romero;M. Costas;D.A. Silva Manzano;S. Kordes;E. Rojas-Ortega;C. Tapia;Y. Guerra;S. Shanmugaratnam;A. Rodriguez-Romero;D. Baker;B. Hocker;D.A. Fernandez-Velasco | "The Stability Landscape of de novo TIM Barrels Explored by a Modular Design Approach", J.Mol.Biol., 433, 167153-167153 | 10.1016/j.jmb.2021.167153|34271011|0070|1089-8638|JMOBAK | UK | Crystal structure of stim11nocys, a de novo designed tim barrel | epistasis;tim barrel;(beta/alfa)8 barrel;de novo protein design;stability landscape;de novo protein | 5bvl(405);7ot7(402);7osu(402);7a8s(392);6z2i(344);7ot8(340);7osv(340);6yqx(282);7p12(269);6wvs(236);7mcc(138);7smj(131);7mcd(122);9qul(101);9quo(101);9qud(101);9qui(101);9quc(101);6zv9(101);6wxp(101);6wxo(101) | null | null | null | 5bvl(405) | null | 5bvl(0.9126999974) | 1gpw(0.6114000082) | 3.20.20.190;3.20.20.10;3.20.20.60;3.20.20.390;3.20.20.380;3.20.20.120;3.20.20.150;3.20.20.220;3.20.20.80;3.20.20.70;3.20.20.370;3.20.20.140 | null |
6ywc | 2020-10-07 | other | id:A,D;type:N;source:Homo sapiens;length:248;seq_nat:MGCVAETGEFTRQVTLKESGPGILQPSQTLSLTCSFSGFSLSTSGMGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLKSRLTISKDTSRNQVFLKITSVDTADTATYYCARLYGFTYGFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTETYICNVNHKPSNTKVDKKVEPKSCDGTKHHHHHH;seq_unnat:MGCVAETGEFT... | 26,391.598 | C 1 2 1 | 181.146|65.417|128.525|90.000|119.352|90.000 | X-RAY DIFFRACTION | null | C. Yang;F. Sesterhenn;J. Bonet;E.A. van Aalen;L. Scheller;L.A. Abriata;J.T. Cramer;X. Wen;S. Rosset;S. Georgeon;T. Jardetzky;T. Krey;M. Fussenegger;M. Merkx;B.E. Correia | "Bottom-up de novo design of functional proteins with complex structural features", Nat.Chem.Biol., 17, 492-500 | 10.1038/s41589-020-00699-x|33398169||1552-4469| | US | De novo designed protein 4e1h_95 in complex with 101f antibody | de novo protein;de novo designed protein | null | null | null | null | 6ywc(0) | null | 7m0q(0.5590999722) | 5hy3(0.6370000243) | null | null |
6ywd | 2020-10-07 | other | id:A;type:N;source:Homo sapiens;length:235;seq_nat:MGCVAETGQVTLRESGPALVKPTQTLTLTCTFSGFSLSTAGMSVGWIRQPPGKALEWLADIWWDDKKHYNPSLKDRLTISKDTSKNQVVLKVTNMDPADTATYYCARDMIFNFYFDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK;seq_unnat:MGCVAETGQVTLRESGPALVKPTQT... | 25,033.338 | P 31 2 1 | 143.710|143.710|90.223|90.000|90.000|120.000 | X-RAY DIFFRACTION | null | C. Yang;F. Sesterhenn;J. Bonet;E.A. van Aalen;L. Scheller;L.A. Abriata;J.T. Cramer;X. Wen;S. Rosset;S. Georgeon;T. Jardetzky;T. Krey;M. Fussenegger;M. Merkx;B.E. Correia | "Bottom-up de novo design of functional proteins with complex structural features", Nat.Chem.Biol., 17, 492-500 | 10.1038/s41589-020-00699-x|33398169||1552-4469| | US | De novo designed protein 4h_01 in complex with mota antibody | de novo protein;de novo designed protein | 4l8i(52) | null | null | null | 4l8i(52) | 6uvo(44) | 4jlr(0.6245999932) | 4fbs(0.649699986) | 1.10.150.80;1.20.1440.140;3.30.750.44;1.20.120.710;1.20.1270.430;1.10.150.190;1.10.8.1060;1.20.1390.20;1.10.246.30;1.10.150.240;1.10.150.120;1.10.150.130;1.10.8.1220;1.10.150.260;1.20.120.1600 | null |
6z0l | 2021-03-17 | other | id:A,C,E,G;type:U;source:unknown;length:50;seq_nat:XNLAALRSELQALRREGFSPERLAALESRLQALERRLAALRSRLQALRGX;seq_unnat:(ACE)NLAALRSELQALRREGFSPERLAALESRLQALERRLAALRSRLQALRG(NH2)|id:B,D,F,H;type:U;source:unknown;length:50;seq_nat:XGLCALRSELQALRREGFSPEELAALESELQALERELAALRSELQALRGX;seq_unnat:(ACE)GLCALRSELQALRREGFSPEELAALESELQAL... | 5,462.353 | P 1 | 40.669|49.952|53.043|105.090|92.490|110.150 | X-RAY DIFFRACTION | null | E.A. Naudin;A.G. McEwen;S.K. Tan;P. Poussin-Courmontagne;J.L. Schmitt;C. Birck;W.F. DeGrado;V. Torbeev | "Acyl Transfer Catalytic Activity in De Novo Designed Protein with N-Terminus of alpha-Helix As Oxyanion-Binding Site", J.Am.Chem.Soc., 143, 3330-3339 | 10.1021/jacs.0c10053|33635059||1520-5126|JACSAT | US | Het-n2 - de novo designed three-helix heterodimer with cysteine at the n2 position of the alpha-helix | de novo protein;acyl transfer activity;domain swapped dimer;oxyanion-binding site | 7bey(88);6z0m(87) | null | 7bey(0.9643999934) | null | 7bey(88) | null | 7bey(0.9643999934) | 6wa9(0.8467000127) | 1.10.287.1520;1.10.287.600;6.10.140.750;1.20.5.420;6.10.140.640;1.10.12.10;6.10.250.660;6.10.140.480;6.10.140.1970;1.10.287.690;1.10.287.650;1.10.287.1100;1.20.5.4010;1.10.287.3280;6.10.140.2110;6.10.250.890;1.10.287.190;1.10.286.70;6.10.250.2860;1.10.287.1130;4.10.860.20;1.10.287.2900;6.10.250.3140;1.10.1220.10;1.10.2... | null |
6z0m | 2021-03-17 | other | id:A,C,E,G;type:U;source:unknown;length:50;seq_nat:XNLAALRSELQALRREGFSPERLAALESRLQALERRLAALRSRLQALRGX;seq_unnat:(ACE)NLAALRSELQALRREGFSPERLAALESRLQALERRLAALRSRLQALRG(NH2)|id:B,D,F,H;type:U;source:unknown;length:50;seq_nat:XCLAALRSELQALRREGFSPEELAALESELQALERELAALRSELQALRGX;seq_unnat:(ACE)CLAALRSELQALRREGFSPEELAALESELQAL... | 5,462.353 | C 1 2 1 | 76.875|73.097|84.128|90.000|105.020|90.000 | X-RAY DIFFRACTION | null | E.A. Naudin;A.G. McEwen;S.K. Tan;P. Poussin-Courmontagne;J.L. Schmitt;C. Birck;W.F. DeGrado;V. Torbeev | "Acyl Transfer Catalytic Activity in De Novo Designed Protein with N-Terminus of alpha-Helix As Oxyanion-Binding Site", J.Am.Chem.Soc., 143, 3330-3339 | 10.1021/jacs.0c10053|33635059||1520-5126|JACSAT | US | Het-ncap - de novo designed three-helix heterodimer with cysteine at the ncap position of the alpha-helix | de novo protein;acyl transfer activity;domain swapped dimer;oxyanion-binding site | 7bey(87);6z0l(87) | null | 1g6u(0.9671999812) | null | 7bey(87) | null | 1g6u(0.9671999812) | 1wqf(0.8626000285) | 1.10.287.1520;6.10.140.750;1.20.5.420;1.10.12.10;6.10.250.2850;6.10.250.660;6.10.140.480;6.10.140.1970;1.10.287.690;1.10.287.650;1.10.287.1100;1.20.5.4010;1.10.287.3280;6.10.140.360;6.10.140.2110;6.10.250.890;1.10.287.190;1.10.286.70;1.10.880.10;4.10.860.20;1.10.287.1130;1.10.287.2900;6.10.250.3140;4.10.860.10;1.10.287... | null |
6z2i | 2021-07-21 | other | id:A;type:D;source:synthetic construct;length:196;seq_nat:MDKDEAWKQVEILRRLGAKQIAYRSDDWRDLQEALKKGGDILIVDATDKDEAWKQVEILRRLGAKQIAYRSDDWRDLQEALKKGGDILIVDATDKDEAWKQVEILRRLGAKQIAYRSDDWRDLQEALKKGGDILIVDATDKDEAWKQVEILRRLGAKQIAYRSDDWRDLQEALKKGGDILIVDATGLEHHHHHH;seq_unnat:MDKDEAWKQVEILRRLGAKQIAYRSDDWRDLQEALKKGGDILIVDATDKDEAWKQVE... | 22,553.506 | P 4 | 87.480|87.480|44.263|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | S. Romero-Romero;M. Costas;D.A. Silva Manzano;S. Kordes;E. Rojas-Ortega;C. Tapia;Y. Guerra;S. Shanmugaratnam;A. Rodriguez-Romero;D. Baker;B. Hocker;D.A. Fernandez-Velasco | "The Stability Landscape of de novo TIM Barrels Explored by a Modular Design Approach", J.Mol.Biol., 433, 167153-167153 | 10.1016/j.jmb.2021.167153|34271011|0070|1089-8638|JMOBAK | UK | Crystal structure of denovotim6, a de novo designed tim barrel | epistasis;tim barrel;(beta/alfa)8 barrel;de novo protein design;stability landscape;de novo protein | 7ot8(381);7osv(381);6yqy(340);6yqx(338);5bvl(337);7ot7(334);7osu(334);7p12(325);7a8s(325);6wvs(291);7mcc(142);7smj(136);6wxp(125);6wxo(125);9qul(123);9quo(123);9qud(123);9qui(123);9quc(123);6zv9(123);7mcd(108) | null | null | null | 7ot8(381) | 2w6r(45) | 6yqx(0.847299993) | 4ixh(0.6403999925) | 3.40.1390.10;3.30.160.600 | null |
6z35 | 2021-04-07 | other | id:A;type:D;source:synthetic construct;length:110;seq_nat:SEFEKLRQTGDELVQAEQRLREIFDKGDDDSLEQVLEEIEELIQKHRQLFDNRQEAADTEAAKQGDQWVQLKQRFREAIDKGDKDSLEQLLEELEQALQKIRELAEKKN;seq_unnat:SEFEKLRQTGDELVQAEQRLREIFDKGDDDSLEQVLEEIEELIQKHRQLFDNRQEAADTEAAKQGDQWVQLKQRFREAIDKGDKDSLEQLLEELEQALQKIRELAEKKN | 12,929.207 | P 1 | 1.000|1.000|1.000|90.00|90.00|90.00 | SOLUTION NMR | null | M. Baumgart;M. Ropke;M.E. Muhlbauer;S. Asami;S.L. Mader;K. Fredriksson;M. Groll;A.P. Gamiz-Hernandez;V.R.I. Kaila | "Design of buried charged networks in artificial proteins", Nat Commun, 12, 1895-1895 | 10.1038/s41467-021-21909-7|33767131||2041-1723| | UK | De-novo maquette 2 protein with buried ion-pair | de novo protein;protein | 7jh6(146);9cte(124) | 7jrq(131) | null | null | 7jh6(146) | 7jrq(131) | 7jh6(0.6399000287) | 7jrq(0.658100009) | 1.10.287.110;1.10.287.600;1.20.5.420;1.10.287.660;6.10.140.630;1.10.287.3810;4.10.810.10;1.10.12.10;6.10.140.380;6.10.140.790;6.10.140.480;1.10.287.690;1.20.5.4010;6.10.140.360;1.10.287.140;6.10.250.1570;6.10.250.890;1.10.287.550;6.10.250.2860;6.10.140.1480;1.20.58.350;4.10.860.20;1.10.287.230;6.10.250.1010;6.10.280.11... | null |
6zt1 | 2021-02-03 | other | id:A,B,C,D,E,F,G,H,I,J,K,L;type:U;source:unknown;length:32;seq_nat:XGEIGQALKEIGKALKEIGYALKEIGQALKGX;seq_unnat:(ACE)GEIGQALKEIGKALKEIG(4BF)ALKEIGQALKG(NH2) | 3,218.627 | P 21 21 2 | 58.920|128.100|56.530|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | W.M. Dawson;E.J.M. Lang;G.G. Rhys;K.L. Shelley;C. Williams;R.L. Brady;M.P. Crump;A.J. Mulholland;D.N. Woolfson | "Structural resolution of switchable states of a de novo peptide assembly", Nat Commun, 12, 1530-1530 | 10.1038/s41467-021-21851-8|33750792||2041-1723| | UK | Two states of a de novo hexameric coiled coil assembly cc-type2-(laidge)4 | de novo protein;de novo peptide;coiled coil;multi-state | null | null | 7qwa(1);7qwd(1);7qwe(1);4pna(1);6xy1(1);7qwb(0.996900022);5ez8(1);7nff(1);7nfi(0.9972000122);7nfj(0.9984999895);7nfl(0.9984999895);7nfm(1);7nfg(1);7nfo(0.993900001);7nfp(0.9987000227);7nfk(0.9983999729);6yb2(1);5ez9(1);7bas(0.9986000061);7bav(1);6eik(1);5eza(1);6g6e(1);6g6f(1);6g6g(1);7nfn(1);4pn9(0.9975000024);6eiz(1)... | null | 6zt1(0) | null | 7qwa(1) | null | 6.10.250.770;1.20.5.420;1.20.5.2620;1.20.5.1450;1.20.5.700;6.10.250.500;6.10.250.200;6.10.250.2150;6.10.250.880;6.10.250.270;1.20.5.3960;6.10.250.2060;6.10.250.1090;6.10.250.2720;6.10.250.1210;6.10.250.2370;6.10.250.1020;6.10.250.1440;1.20.5.1610;6.10.250.160;6.10.250.850;6.10.250.490;6.10.250.380;1.20.5.110;1.20.5.250... | null |
6zv9 | 2020-11-25 | other | id:A,B;type:D;source:synthetic construct;length:174;seq_nat:GAMGDILIVWAKDVDEMLKQVEILRRLGAKQIAVESSDWRILQEALKKGGDILIVNGGGMTITFRGDDLEALLKAAIEMIKQALKFGATITLSLDGNDLNINITGVPEQVRKELAKEAERLAKEFGITVTRTGGGDVDEMLKQVEILRRLGAKQIAVESDDWRILQEALKKG;seq_unnat:GAMGDILIVWAKDVDEMLKQVEILRRLGAKQIAVESSDWRILQEALKKGGDILIVNGGGMTITFRGDDLEALLKAAI... | 18,906.947 | P 1 21 1 | 43.970|56.470|71.280|90.000|101.690|90.000 | X-RAY DIFFRACTION | null | S.J. Caldwell;I.C. Haydon;N. Piperidou;P.S. Huang;M.J. Bick;H.S. Sjostrom;D. Hilvert;D. Baker;C. Zeymer | "Tight and specific lanthanide binding in a de novo TIM barrel with a large internal cavity designed by symmetric domain fusion", Proc.Natl.Acad.Sci.USA, 117, 30362-30369 | 10.1073/pnas.2008535117|33203677|0040|1091-6490|PNASA6 | US | Terbium(iii)-bound de novo tim barrel-ferredoxin fold fusion dimer with 4-glutamate binding site and tryptophan antenna (tfd-ee n6w) | de novo protein;lanthanide-binding protein | 9qud(337);9qui(337);9quc(337);9qul(334);9quo(334);6wxp(333);6wxo(325);6wvs(154);6yqx(153);7p12(151);9qup(145);4pww(135);6z2i(121);7ot8(113);7osv(113);2mtl(112);2kl8(106);4ky3(106);4kyz(106);4rjv(103);6yqy(97);5bvl(96);5cw9(95);4ney(93);7ot7(93);7osu(93);7a8s(93);4nez(92);7mcc(52);7mcd(51);7smj(51) | 4hhu(99) | null | null | 9qud(337) | 4hhu(99) | 6wxp(0.9114999771) | 4hhu(0.7437999845) | 3.30.70.1140;3.30.70.790;3.30.70.2860;3.40.1260.10;3.30.70.2250;3.30.70.1430;3.30.70.80;3.30.70.2810;3.30.70.870;3.30.70.1280;3.30.1370.10;3.30.70.1520;3.30.70.1400;3.30.70.250;3.30.70.860;3.30.70.2350;3.30.70.240;3.30.70.600;3.30.70.2280;3.30.70.1440;3.30.70.1750;3.30.70.2940;3.30.70.1130;3.30.70.330;3.30.70.2750;3.30... | null |
7a1t | 2021-05-19 | other | id:A,B,C,D,E,F;type:U;source:unknown;length:32;seq_nat:XGEIAQGLKEIAKGLKEIAYGLKEIAQGLKGX;seq_unnat:(ACE)GEIAQGLKEIAKGLKEIA(4BF)GLKEIAQGLKG(NH2) | 3,218.627 | C 2 2 21 | 50.646|129.687|59.141|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | W.M. Dawson;F.J.O. Martin;G.G. Rhys;K.L. Shelley;R.L. Brady;D.N. Woolfson | "Coiled coils 9-to-5: rational de novo design of alpha-helical barrels with tunable oligomeric states", Chem Sci, 12, 6923-6928 | 10.1039/d1sc00460c|34745518||2041-6520| | UK | A collapsed hexameric state of a de novo coiled-coil assembly: cc-type2-(gglaid)4-w19brphe | synthetic peptide;de novo protein;coiled coil;homomeric assembly | null | null | 7bim(1);8a09(0.9961000085);7baw(1);7bas(1);7bat(0.996900022);4pn9(1);6eiz(1);8b15(0.9957000017);8b16(1);7bav(1);7qwd(1);7qwb(0.9990000129);7qwe(1);4pna(1);7nfk(0.9980999827);5ez8(1);7nfj(1);7qwa(1);6xy1(1);5ez9(1);7bau(1);6eik(0.9965999722);6g6f(1);7nfo(0.9955000281);7nfl(1);7nfn(1);5ezc(1);5eze(0.9890000224);7nfh(1);6... | null | 7a1t(0) | null | 7baw(1) | null | 6.10.250.770;1.20.5.420;1.20.5.2620;1.20.5.1450;1.20.5.700;6.10.250.500;6.10.250.200;6.10.250.2150;6.10.250.880;6.10.250.270;1.20.5.3960;6.10.250.2060;6.10.250.1090;6.10.250.2720;6.10.250.1210;6.10.250.2370;6.10.250.1020;6.10.250.1440;1.20.5.1610;6.10.250.160;6.10.250.850;6.10.250.490;6.10.250.380;1.20.5.110;1.20.5.250... | null |
7a8s | 2021-03-24 | other | id:A;type:D;source:synthetic construct;length:201;seq_nat:MDKDEAWKQVEQLRREGATQIAYRSDDWRDLKEAWKKGADILIVDATDKDEAWKQVEQLRREGATQIAYRSDDWRDLKEAWKKGADILIVSEEMARHAPKDEAWKQVEQLRREGATQIAYRSDDWRDLKEAWKKGADILIVDATDKDEAWKQVEQLRREGATQIAYRSDDWRDLKEAWKKGADILIVDATGLEHHHHHH;seq_unnat:MDKDEAWKQVEQLRREGATQIAYRSDDWRDLKEAWKKGADILIVDATDKDEA... | 23,526.18 | P 41 21 2 | 50.510|50.510|133.274|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | J.G. Wiese;S. Shanmugaratnam;B. Hocker | "Extension of a de novo TIM barrel with a rationally designed secondary structure element", Protein Sci., 30, 982-989 | 10.1002/pro.4064|33723882|0795|1469-896X|PRCIEI | US | De novo designed ba8-barrel stim11 with an alpha-helical extension | tim-barrel;protein design;de novo protein;stim11 | 6yqy(393);5bvl(390);7ot7(387);7osu(387);6z2i(329);7ot8(325);7osv(325);6yqx(267);7p12(254);6wvs(224);7mcc(128);7smj(122);7mcd(114);6wxp(98);6wxo(98);9qul(96);9quo(96);9qud(96);9qui(96);9quc(96);6zv9(96) | null | null | null | 6yqy(393) | null | 7ot7(0.8831999898) | 3igs(0.6024000049) | 3.20.20.190;3.20.20.10;3.20.20.60;3.20.20.390;3.20.20.380;3.20.20.120;3.20.20.150;3.20.20.220;3.20.20.70;3.20.20.370;3.20.20.140 | null |
7ah0 | 2021-10-06 | other | id:A;type:D;source:synthetic construct;length:113;seq_nat:GSPELREKHRALAEQVYATGQEMLKNTSNSPELREKHRALAEQVYATGQEMLKNGSVSPSPELREKHRALAEQVYATGQEMLKNTSNSPELREKHRALAEQVYATGQEMLKN;seq_unnat:GSPELREKHRALAEQVYATGQEMLKNTSNSPELREKHRALAEQVYATGQEMLKNGSVSPSPELREKHRALAEQVYATGQEMLKNTSNSPELREKHRALAEQVYATGQEMLKN | 12,652.146 | H 3 | 81.250|81.250|59.060|90.00|90.00|120.00 | X-RAY DIFFRACTION | null | G.H. Hutchins;C.E.M. Noble;H.A. Bunzel;C. Williams;P. Dubiel;S.K.N. Yadav;P.M. Molinaro;R. Barringer;H. Blackburn;B.J. Hardy;A.E. Parnell;C. Landau;P.R. Race;T.A.A. Oliver;R.L. Koder;M.P. Crump;C. Schaffitzel;A.S.F. Oliveira;A.J. Mulholland;J.L.R. Anderson | "An expandable, modular de novo protein platform for precision redox engineering", Proc.Natl.Acad.Sci.USA, 120, e2306046120-e2306046120 | 10.1073/pnas.2306046120|37487099|0040|1091-6490|PNASA6 | US | Crystal structure of the de novo designed two-heme binding protein, 4d2 | heme;de novo protein;maquette | 9h4c(214) | null | 9h4c(0.9793000221) | null | 9h4c(214) | null | 9h4c(0.9793000221) | 6g94(0.6870999932) | 1.20.58.820;1.20.120.160;1.20.5.420;1.20.120.400;1.20.120.360;1.20.58.160;1.20.120.290;1.20.58.810;1.20.120.20;1.20.120.330;1.20.1280.250;1.20.120.580;1.20.58.1150;1.20.120.30;1.20.58.1800;1.20.120.960;1.20.1270.430;1.20.58.1360;1.20.120.260;1.20.1440.210;1.20.1270.90;1.20.120.50;1.20.58.200;1.20.120.440;1.20.120.630;1... | null |
7arr | 2021-07-14 | other | id:A,B,C,D;type:U;source:unknown;length:35;seq_nat:LSEEEIQRIFGLSSEQIKSLPEEXYKKXVEXTGYL;seq_unnat:LSEEEIQRIFGLSSEQIKSLPEE(XCP)YKK(XCP)VE(XCP)TGYL | 4,081.618 | P 1 | 30.937|32.068|43.087|114.160|91.880|109.860 | X-RAY DIFFRACTION | null | M. Bejger;P. Fortuna;M. Drewniak-Switalska;J. Plewka;W. Rypniewski;L. Berlicki | "A computationally designed beta-amino acid-containing miniprotein", Chem.Commun.(Camb.), 57, 6015-6018 | 10.1039/d1cc02192c|34032224||1364-548X| | UK | The de novo designed hybrid alpha/beta-miniprotein | alpha/beta-peptide;de novo protein;foldamer | 7ars(61) | null | 7ars(0.9907000065) | null | 7ars(61) | null | 7ars(0.9907000065) | 5i1s(0.6542000175) | null | null |
7ars | 2021-07-14 | other | id:A,B;type:U;source:unknown;length:35;seq_nat:LSEEEIQRIFGLSSEQIKSLPEEXYKKXVEXTGYM;seq_unnat:LSEEEIQRIFGLSSEQIKSLPEE(XCP)YKK(XCP)VE(XCP)TGY(MSE) | 4,146.551 | C 1 2 1 | 51.089|35.481|41.919|90.000|111.240|90.000 | X-RAY DIFFRACTION | null | M. Bejger;P. Fortuna;M. Drewniak-Switalska;J. Plewka;W. Rypniewski;L. Berlicki | "A computationally designed beta-amino acid-containing miniprotein", Chem.Commun.(Camb.), 57, 6015-6018 | 10.1039/d1cc02192c|34032224||1364-548X| | UK | The de novo designed hybrid alpha/beta-miniprotein (with se-methionine) | alpha/beta-peptide;de novo protein;foldamer | 7arr(62) | null | 7arr(0.9981999993) | null | 7arr(62) | null | 7arr(0.9981999993) | 1yri(0.6485999823) | null | null |
7awy | 2021-01-13 | other | id:A;type:D;source:synthetic construct;length:362;seq_nat:GSHMDGTEKWRFKTNKAIESTPVIGNDGTIYFGSNHLYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWRFKTNKAIESTPVIGNDGTIYFGSNHLYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWRFKTNKAIESTPVIGN... | 40,252.145 | P 1 21 1 | 40.077|79.834|47.426|90.000|100.984|90.000 | X-RAY DIFFRACTION | null | B. Mylemans;T. Killian;L. Vandebroek;L. Van Meervelt;J.R.H. Tame;T.N. Parac-Vogt;A.R.D. Voet | "Crystal structures of Scone: pseudosymmetric folding of a symmetric designer protein", Acta Crystallogr D Struct Biol, 77, 933-942 | 10.1107/S2059798321005787|34196619||2059-7983| | null | Crystal structure of the computationally designed scone-r protein | computational design;de novo protein;beta-propeller | 7ax0(722);7ax2(722);7awz(722);6tjh(586);6tji(580);6tjg(522);6tjf(398);8prj(379);6tje(334);6tjd(271);6tjc(207);8pra(201);6tjb(141);8prl(108);8pr9(103);8prb(103);8prr(100);8pre(100);8prf(100) | 3hxj(434);3q54(59);6sob(59);5ljo(59);6soj(59);6sn9(59);9h84(59);9h85(59);4xga(59);9h89(59);8qpu(59);3q7m(59);3q7n(59);3q7o(59);3prw(59);2yh3(59);5ayw(59);6v05(59);5d0o(59);3p1l(59);4pk1(59);6lyq(58);6lyr(58);6lys(58);6lyu(58) | null | null | 7ax0(722) | 3hxj(434) | 7awz(0.9204000235) | 5mzh(0.670599997) | 2.40.10.500;2.20.25.400;2.20.25.650;2.20.25.510;2.40.128.630;2.40.128.650 | null |
7awz | 2021-01-13 | other | id:A;type:D;source:synthetic construct;length:362;seq_nat:GSHMDGTEKWRFKTNDAITSAASIGKDGTIYFGSDKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTEKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYFGSDKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTEKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWRFKTNDAITSAASIGK... | 40,116.891 | P 1 21 1 | 46.443|61.952|54.059|90.000|111.525|90.000 | X-RAY DIFFRACTION | null | B. Mylemans;T. Killian;L. Vandebroek;L. Van Meervelt;J.R.H. Tame;T.N. Parac-Vogt;A.R.D. Voet | "Crystal structures of Scone: pseudosymmetric folding of a symmetric designer protein", Acta Crystallogr D Struct Biol, 77, 933-942 | 10.1107/S2059798321005787|34196619||2059-7983| | null | Crystal structure of the computationally designed scone-e protein | computational design;de novo protein;beta-propeller | 7ax0(786);7ax2(786);7awy(731);6tjh(527);6tji(520);6tjg(468);6tjf(355);8prj(351);6tje(297);6tjd(241);6tjc(184);8pra(183);6tjb(125);8prl(100);8prr(96);8pre(96);8prf(96);8pr9(96);8prb(96) | 3hxj(450);3q54(58);6sob(58);5ljo(58);6soj(58);6sn9(58);9h84(58);9h85(58);4xga(58);9h89(58);8qpu(58);3q7m(58);3q7n(58);3q7o(58);3prw(58);2yh3(58);5ayw(58);6v05(58);5d0o(58);3p1l(58);4pk1(58);6lyq(57);6lyr(57);6lys(57);6lyu(57);2yms(51) | null | null | 7ax0(786) | 3hxj(450) | 7ax0(0.945200026) | 3hxj(0.6869999766) | 2.40.128.630;2.40.128.650 | null |
7ax0 | 2021-06-30 | other | id:A;type:D;source:synthetic construct;length:362;seq_nat:GSHMDGTEKWRFKTNDAITSAASIGKDGTIYFGSDKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTEKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYFGSDKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTEKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWRFKTNDAITSAASIGK... | 40,116.891 | P 61 2 2 | 88.270|88.270|194.987|90.000|90.000|120.000 | X-RAY DIFFRACTION | null | B. Mylemans;T. Killian;L. Vandebroek;L. Van Meervelt;J.R.H. Tame;T.N. Parac-Vogt;A.R.D. Voet | "Crystal structures of Scone: pseudosymmetric folding of a symmetric designer protein", Acta Crystallogr D Struct Biol, 77, 933-942 | 10.1107/S2059798321005787|34196619||2059-7983| | null | Crystal structure of the computationally designed scone-e protein co-crystallized with sta form a | computational design;de novo protein;beta-propeller | 7ax2(786);7awz(786);7awy(731);6tjh(527);6tji(520);6tjg(468);6tjf(355);8prj(351);6tje(297);6tjd(241);6tjc(184);8pra(183);6tjb(125);8prl(100);8prr(96);8pre(96);8prf(96);8pr9(96);8prb(96) | 3hxj(450);3q54(58);6soh(58);6sn3(58);6sob(58);5ljo(58);6soj(58);6sn4(58);6soc(58);6smx(58);6sn5(58);6so7(58);6sn7(58);6sn0(58);6so8(58);6sn8(58);6sog(58);6sn9(58);6sn2(58);6soa(58);9h84(58);9h85(58);4xga(58);9h89(58);8qpu(58);3q7m(58);3q7n(58);3q7o(58);3prw(58);2yh3(58);5ayw(58);7nd0(58);6v05(58);7nbx(58);7ncs(58);7bnq... | null | null | 7ax2(786) | 3hxj(450) | 7awz(0.943599999) | 3hxj(0.6880000234) | 2.40.10.500;2.20.25.400;2.20.25.650;2.40.128.630;2.40.128.650 | null |
7ax2 | 2021-01-13 | other | id:A;type:D;source:synthetic construct;length:362;seq_nat:GSHMDGTEKWRFKTNDAITSAASIGKDGTIYFGSDKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTEKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYFGSDKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTEKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWRFKTNDAITSAASIGK... | 40,116.891 | I 41 2 2 | 133.517|133.517|70.093|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | B. Mylemans;T. Killian;L. Vandebroek;L. Van Meervelt;J.R.H. Tame;T.N. Parac-Vogt;A.R.D. Voet | "Crystal structures of Scone: pseudosymmetric folding of a symmetric designer protein", Acta Crystallogr D Struct Biol, 77, 933-942 | 10.1107/S2059798321005787|34196619||2059-7983| | null | Crystal structure of the computationally designed scone-e protein co-crystallized with sta, form b | computational design;de novo protein;beta-propeller | 7ax0(786);7awz(786);7awy(731);6tjh(527);6tji(520);6tjg(468);6tjf(355);8prj(351);6tje(297);6tjd(241);6tjc(184);8pra(183);6tjb(125);8prl(100);8prr(96);8pre(96);8prf(96);8pr9(96);8prb(96) | 3hxj(450);3q54(58);6sob(58);5ljo(58);6soj(58);6sn9(58);9h84(58);9h85(58);4xga(58);9h89(58);8qpu(58);3q7m(58);3q7n(58);3q7o(58);3prw(58);2yh3(58);5ayw(58);6v05(58);5d0o(58);3p1l(58);4pk1(58);6lyq(57);6lyr(57);6lys(57);6lyu(57);2yms(51) | null | null | 7ax0(786) | 3hxj(450) | 7awz(0.9175000191) | 3hxj(0.6901000142) | 2.40.10.500;2.40.128.190;2.40.10.360;2.20.25.650;2.40.128.630 | null |
7aye | 2021-08-18 | other | id:A;type:N;source:Homo sapiens;length:115;seq_nat:MEFSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQESSDSGTSVSENLE;seq_unnat:MEFSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQESSDSGTSVSENLE|id:B;type:U;source:unknown;le... | 13,185.105 | P 43 2 2 | 73.238|73.238|92.262|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | S. Shui;P. Gainza;L. Scheller;C. Yang;Y. Kurumida;S. Rosset;S. Georgeon;R.B. Di Roberto;R. Castellanos-Rueda;S.T. Reddy;B.E. Correia | "A rational blueprint for the design of chemically-controlled protein switches", Nat Commun, 12, 5754-5754 | 10.1038/s41467-021-25735-9|34599176||2041-1723| | UK | Crystal structure of the computationally designed chemically disruptable heterodimer ld6-mdm2 | protein-protein interaction;protein binding;gene and cell therapy;protein switches;chemically disruptable heterodimer (cdh) | null | null | null | null | null | null | null | null | null | null |
7b4t | 2021-11-24 | other | id:B;type:D;source:synthetic construct;length:15;seq_nat:KSIRIGPGQAFYAPP;seq_unnat:KSIRIGPGQAFYA(DPR)P|id:A;type:D;source:synthetic construct;length:166;seq_nat:GPGSDLGKKLLEAARAGQDDEVRILMANGADVNADDNTGETPLHLAAYEGHLEIVEVLLKTGADVNAEDMMGFTPLHLAAAWGHLEIVEVLLKHGADVNAQDNQGVTPLHLAAYEGHLEFVEVLLKHGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK... | 1,603.862 | P 21 21 21 | 33.980|67.050|95.610|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | N. Friedrich;E. Stiegeler;M. Glogl;T. Lemmin;S. Hansen;C. Kadelka;Y. Wu;P. Ernst;L. Maliqi;C. Foulkes;M. Morin;M. Eroglu;T. Liechti;B. Ivan;T. Reinberg;J.V. Schaefer;U. Karakus;S. Ursprung;A. Mann;P. Rusert;R.D. Kouyos;J.A. Robinson;H.F. Gunthard;A. Pluckthun;A. Trkola | "Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization", Nat Commun, 12, 6705-6705 | 10.1038/s41467-021-27075-0|34795280||2041-1723| | UK | Broadly neutralizing darpin bnd.1 in complex with the hiv-1 envelope variable loop 3 crown mimetic peptide v3-if (bg505) | neutralization;antibodies;v3;conformation;darpins;de novo protein;hiv | 7b4w(287);7zyu(284);6fpa(284);6fpb(284);6fp9(284);7z7e(278);9gtk(277);8u1b(274);9dmi(274);7z7c(273);9g8i(271);2xee(269);9ivp(269);4j7w(267);4j8y(267);9gnb(266);8a19(266);8a1a(266);7z71(265);8aed(263);5le9(262);2xeh(261);5oou(261);5oos(261);8ql6(261);8ql5(261);9fe2(261);8ql9(261);9fe3(261);9u6a(261);8ql2(261);8ql3(261);... | 6qfk(317);6s9s(290);6fp7(289);5fin(285);5fio(285);6fp8(284);4hrm(278);6gcu(278);5ma6(277);5ma8(277);5ma4(277);5mak(277);5ma3(277);5ma5(277);5ma9(277);6qev(275);5aq8(274);5lel(272);6d65(271);1svx(271);4k5a(271);4k5b(271);6ob5(270);5aq9(268);5op1(267);4hrl(266);3nog(265);7alr(265);6nht(265);6nhv(265);4f6r(264);4hna(264);... | 6fp9(0.9585999846);7b4w(0.9631999731);7z7e(0.9641000032);6fpa(0.9501000047);9gtk(0.9664000273);6fpb(0.9631000161);7z7c(0.9527999759);7z71(0.9528999925);5knh(0.951300025);4ydw(0.9534999728);5le8(0.9603999853);5le7(0.950600028);5leb(0.9581000209);5lea(0.9538000226);9epa(0.950600028) | 6qfk(0.9595999718);5fin(0.9700999856);5ma5(0.9552000165);5ma9(0.953700006);4k5a(0.9659000039);6qev(0.9563000202);6z4s(0.9555000067);4jb8(0.9520999789);6f5e(0.9503999949);5aq7(0.9538999796);6yvr(0.9502000213) | 7b4w(287) | 6qfk(317) | 9gtk(0.9664000273) | 5fin(0.9700999856) | 1.10.10.2400;1.25.40.70;1.10.220.10;1.25.40.850;1.25.40.1040;1.25.40.20 | null |
7b4u | 2021-11-24 | other | id:A,C;type:D;source:synthetic construct;length:133;seq_nat:GPGSDLGKKLLEAARAGQDDEVRILMANGADVNASDADVGATPLHLAAWAGHLEIVEVLLKTGADVNAVDIWGLTPLHLAAAVGHLEIVEVLLKHGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAAKLN;seq_unnat:GPGSDLGKKLLEAARAGQDDEVRILMANGADVNASDADVGATPLHLAAWAGHLEIVEVLLKTGADVNAVDIWGLTPLHLAAAVGHLEIVEVLLKHGADVNAQDKFGKTPFDLAIDNG... | 13,744.465 | P 21 21 21 | 51.120|69.290|75.280|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | N. Friedrich;E. Stiegeler;M. Glogl;T. Lemmin;S. Hansen;C. Kadelka;Y. Wu;P. Ernst;L. Maliqi;C. Foulkes;M. Morin;M. Eroglu;T. Liechti;B. Ivan;T. Reinberg;J.V. Schaefer;U. Karakus;S. Ursprung;A. Mann;P. Rusert;R.D. Kouyos;J.A. Robinson;H.F. Gunthard;A. Pluckthun;A. Trkola | "Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization", Nat Commun, 12, 6705-6705 | 10.1038/s41467-021-27075-0|34795280||2041-1723| | UK | Broadly neutralizing darpin bnd.2 in complex with the hiv-1 envelope variable loop 3 crown mimetic peptide v3-if (bg505) | neutralization;antibodies;v3;conformation;darpins;de novo protein;hiv | 7b4v(267);7z73(227);8rci(224);9fzb(221);7b4t(220);7b4w(219);6fp9(219);6fpa(218);6fpb(218);9gtk(216);9f23(215);8hkh(215);7zyu(213);7z7e(210);8ak1(209);8u1b(208);9dmi(208);7z71(207);7z7c(207);8ql6(206);8ql5(206);8ql9(206);9u6a(206);8ql2(206);8ql3(206);9f8g(206);8qlb(206);8qla(206);8ql7(206);8ql8(206);8qea(206);8ql4(206);... | 6fp7(224);6s9s(220);6fp8(219);6s9t(218);5ma6(216);5ma8(216);5ma4(216);5mak(216);5ma3(216);5ma5(216);5ma9(216);2xzd(213);2y0b(213);6gcu(213);7bhe(212);7bhf(212);4hrm(212);2xzt(211);4k5b(211);5fin(211);5fio(211);4hrl(210);3zuv(209);7alr(209);6qev(207);3hg0(206);6bbn(206);5nm5(206);6zwc(206);5eib(206);6mzf(206);6mze(206);... | 7b4v(1);7z73(0.9566000104);8hkh(0.9596999884) | 6s9t(0.9595000148) | 7b4v(267) | 6fp7(224) | 7b4v(1) | 6s9t(0.9595000148) | 1.25.40.1040;1.10.10.2400;1.10.220.10 | null |
7b4v | 2021-11-24 | other | id:C,A;type:D;source:synthetic construct;length:133;seq_nat:GPGSDLGKKLLEAARAGQDDEVRILMANGADVNASDADVGATPLHLAAWAGHLEIVEVLLKTGADVNAVDIWGLTPLHLAAAVGHLEIVEVLLKHGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAAKLN;seq_unnat:GPGSDLGKKLLEAARAGQDDEVRILMANGADVNASDADVGATPLHLAAWAGHLEIVEVLLKTGADVNAVDIWGLTPLHLAAAVGHLEIVEVLLKHGADVNAQDKFGKTPFDLAIDNG... | 13,744.465 | P 21 21 21 | 50.630|69.340|69.920|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | N. Friedrich;E. Stiegeler;M. Glogl;T. Lemmin;S. Hansen;C. Kadelka;Y. Wu;P. Ernst;L. Maliqi;C. Foulkes;M. Morin;M. Eroglu;T. Liechti;B. Ivan;T. Reinberg;J.V. Schaefer;U. Karakus;S. Ursprung;A. Mann;P. Rusert;R.D. Kouyos;J.A. Robinson;H.F. Gunthard;A. Pluckthun;A. Trkola | "Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization", Nat Commun, 12, 6705-6705 | 10.1038/s41467-021-27075-0|34795280||2041-1723| | UK | Broadly neutralizing darpin bnd.2 in complex with the hiv-1 envelope variable loop 3 crown mimetic peptide v3-if (bg505) | neutralization;antibodies;v3;conformation;darpins;de novo protein;hiv | 7b4u(267);7z73(227);8rci(224);9fzb(221);7b4t(220);7b4w(219);6fp9(219);6fpa(218);6fpb(218);9gtk(216);9f23(215);8hkh(215);7zyu(213);7z7e(210);8ak1(209);8u1b(208);9dmi(208);7z71(207);7z7c(207);8ql6(206);8ql5(206);8ql9(206);9u6a(206);8ql2(206);8ql3(206);9f8g(206);8qlb(206);8qla(206);8ql7(206);8ql8(206);8qea(206);8ql4(206);... | 6fp7(224);6s9s(220);6fp8(219);6s9t(218);5ma6(216);5ma8(216);5ma4(216);5mak(216);5ma3(216);5ma5(216);5ma9(216);2xzd(213);2y0b(213);6gcu(213);7bhe(212);7bhf(212);4hrm(212);2xzt(211);4k5b(211);5fin(211);5fio(211);4hrl(210);3zuv(209);7alr(209);6qev(207);3hg0(206);6bbn(206);5nm5(206);6zwc(206);5eib(206);6mzf(206);6mze(206);... | 7b4u(1);7z73(0.9678999782);8hkh(0.9636999965);8ak1(0.9519000053) | 6s9t(0.9703000188);5eyl(0.959800005);7pje(0.9552999735) | 7b4u(267) | 6fp7(224) | 7b4u(1) | 6s9t(0.9703000188) | 1.25.40.290;1.25.40.750;1.25.60.10;1.25.10.10;1.25.40.580;1.25.40.180;1.25.40.420;1.25.40.320;1.25.40.350;1.25.40.20 | null |
7b4w | 2021-11-24 | other | id:A,C;type:D;source:synthetic construct;length:163;seq_nat:SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGATPLHLAAWTGHLEIVEVLLKTGADVNAVDSVGYTPLHLAAAEGHLEIVEVLLKTGADVNAQDAQGITPLHLAAWYGHLEIVEVLLKHGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAAKLN;seq_unnat:SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGATPLHLAAWTGHLEIVEVLLKTGADVNAVDSVGYTPLHLAAAEGHLEIVEVL... | 17,108.199 | P 21 21 21 | 50.400|67.060|93.110|90.00|90.00|90.00 | X-RAY DIFFRACTION | null | N. Friedrich;E. Stiegeler;M. Glogl;T. Lemmin;S. Hansen;C. Kadelka;Y. Wu;P. Ernst;L. Maliqi;C. Foulkes;M. Morin;M. Eroglu;T. Liechti;B. Ivan;T. Reinberg;J.V. Schaefer;U. Karakus;S. Ursprung;A. Mann;P. Rusert;R.D. Kouyos;J.A. Robinson;H.F. Gunthard;A. Pluckthun;A. Trkola | "Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization", Nat Commun, 12, 6705-6705 | 10.1038/s41467-021-27075-0|34795280||2041-1723| | UK | Broadly neutralizing darpin bnd.3 in complex with the hiv-1 envelope variable loop 3 crown mimetic peptide v3-if (bg505) | neutralization;antibodies;v3;conformation;darpins;de novo protein;hiv | 7b4t(288);6fp9(287);9gtk(286);7zyu(285);6fpa(282);6fpb(282);7z7c(278);8u1b(278);9dmi(278);7z7e(273);2xee(271);9gnb(271);8a1a(271);7z72(267);7z71(266);9g8i(265);5oou(265);2xeh(263);8a19(263);5op3(262);6c9k(262);8aed(261);5oos(261);5kng(261);5knh(261);8ve7(261);4atz(258);2bkg(258);4j7w(258);4j8y(258);9ivp(258);7dng(256);... | 6qev(315);6fp7(287);6fp8(287);6s9s(282);4k5b(278);5fin(274);5fio(274);6qfk(274);4hrm(273);6gcu(273);5ma4(272);5mak(272);5ma3(272);5ma5(272);5ma6(271);5ma8(271);5ma9(271);5op1(270);4k5a(270);3zu7(268);5oov(267);4hrl(266);6nht(266);6nhv(266);5aqb(265);5ooy(264);5oyj(264);5mad(263);5aq8(263);3nog(262);5lel(261);6d65(260);... | 6fpa(0.9607999921);9gtk(0.9721999764);6fp9(0.9674999714);7b4t(0.9573000073);6fpb(0.9628000259);7z7e(0.9599999785);7z7c(0.959800005);5knh(0.9542999864);2xee(0.9534999728);2xeh(0.9503999949);1mj0(0.9566000104);8aed(0.9519000053);5le8(0.953700006);5lea(0.9508000016);5leb(0.9556000233);9epa(0.9538999796);5le7(0.956799984);... | 6fp8(0.9664999843);6qev(0.961499989);5fin(0.9631000161);4k5a(0.959800005);4k5b(0.9595000148);5ma4(0.9581000209);5ma9(0.9523000121);6z4s(0.9516999722);6z4v(0.953700006);6yvr(0.9609000087);4jb8(0.9538999796) | 7b4t(288) | 6qev(315) | 9gtk(0.9721999764) | 6fp8(0.9664999843) | 1.10.10.10;1.10.10.2400;1.25.40.70;1.10.220.10;1.25.10.10;1.25.40.1040;1.25.40.20 | null |
7bas | 2021-04-28 | other | id:A,B,C,D,E;type:U;source:unknown;length:32;seq_nat:XGEIAQTLKEIAKTLKEIAYTLKEIAQTLKGX;seq_unnat:(ACE)GEIAQTLKEIAKTLKEIA(4BF)TLKEIAQTLKG(NH2) | 3,394.835 | P 2 21 21 | 43.560|54.647|57.528|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | W.M. Dawson;F.J.O. Martin;G.G. Rhys;K.L. Shelley;R.L. Brady;D.N. Woolfson | "Coiled coils 9-to-5: rational de novo design of alpha-helical barrels with tunable oligomeric states", Chem Sci, 12, 6923-6928 | 10.1039/d1sc00460c|34745518||2041-6520| | UK | A de novo pentameric coiled-coil assembly: cc-type2-(tglaid)4-w19brphe | alpha;pentamer;barrel;de novo protein;helical | null | null | 7bav(1);8b16(1);8b15(0.9973000288);8a09(1);4pn9(1);6eiz(1);7bau(1);7a1t(1);7bim(1);7qwb(1);7qwd(1);7qwe(1);4pna(1);7qwa(1);5ez8(1);7nfj(1);7nfk(1);6xy1(1);6zt1(1);7baw(1);7nfo(1);5ez9(1);6eik(0.9986000061);6g6f(1);7bat(0.9983000159);7nfl(1);7nfn(1);5ezc(1);5eze(0.9983999729);7nfh(1);6g6b(1);6g6d(1);6g6a(0.9950000048);7... | null | 7bas(0) | null | 7bav(1) | null | 6.10.250.770;1.20.5.420;1.20.5.2620;1.20.5.1450;1.20.5.700;6.10.250.500;6.10.250.200;6.10.250.2150;6.10.250.880;6.10.250.270;6.10.250.2720;6.10.250.2060;6.10.250.1090;1.20.5.3960;6.10.250.1210;6.10.250.2370;6.10.250.1020;6.10.250.1440;1.20.5.1610;6.10.250.160;6.10.250.850;6.10.250.490;6.10.250.380;1.20.5.110;1.20.5.250... | null |
7bat | 2021-04-28 | other | id:A,B,C;type:U;source:unknown;length:32;seq_nat:XGEIAQGIKEIAKGIKEIAWGIKEIAQGIKGX;seq_unnat:(ACE)GEIAQGIKEIAKGIKEIAWGIKEIAQGIKG(NH2) | 3,178.767 | I 2 2 2 | 39.887|42.736|126.197|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | W.M. Dawson;F.J.O. Martin;G.G. Rhys;K.L. Shelley;R.L. Brady;D.N. Woolfson | "Coiled coils 9-to-5: rational de novo design of alpha-helical barrels with tunable oligomeric states", Chem Sci, 12, 6923-6928 | 10.1039/d1sc00460c|34745518||2041-6520| | UK | A hexameric barrel state of a de novo coiled-coil assembly: cc-type2-(ggiaid)4 | alpha;barrel;hexamer;de novo protein;helical | null | null | 7baw(1);7bim(0.9990000129);7a1t(1);8a09(1);4pn9(1);6eiz(1);6g68(0.996999979);6g69(1);6g6d(0.9987999797);8b16(1);7bas(0.9983000159);7bav(0.9983000159);6yb2(1);7bau(1);6g6a(0.9983000159);6g6b(0.9918000102);6g6c(1);6g6f(1);6g6g(0.9983999729);6xy1(1);7nfg(0.9983000159);7nfh(0.994599998);7nfj(1);7nfo(0.9947999716);4pna(1);5... | null | 7bat(0) | null | 6g6f(1) | 4kvt(0.8949000239) | 6.10.250.770;1.20.5.420;1.20.5.2620;6.10.250.500;6.10.250.1150;6.10.250.200;6.10.250.2150;6.10.250.880;1.20.5.3960;6.10.250.740;6.10.250.2060;6.10.250.1090;6.10.250.2370;6.10.250.1210;6.10.250.160;6.10.250.80;6.10.250.490;6.10.250.2230;1.20.5.110;6.10.250.1290;6.10.250.3290;6.10.250.30;1.20.5.460;1.20.5.740;6.10.250.29... | null |
7bau | 2021-04-28 | other | id:A,B,C,D,E,F,G,H,I,J;type:U;source:unknown;length:32;seq_nat:XGEIAQTIKEIAKTIKEIAYTIKEIAQTIKGX;seq_unnat:(ACE)GEIAQTIKEIAKTIKEIA(4BF)TIKEIAQTIKG(NH2) | 3,394.835 | P 1 21 1 | 40.597|53.446|56.156|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | W.M. Dawson;F.J.O. Martin;G.G. Rhys;K.L. Shelley;R.L. Brady;D.N. Woolfson | "Coiled coils 9-to-5: rational de novo design of alpha-helical barrels with tunable oligomeric states", Chem Sci, 12, 6923-6928 | 10.1039/d1sc00460c|34745518||2041-6520| | UK | A de novo pentameric coiled-coil assembly: cc-type2-(tgiaid)4-w19brphe | alpha;pentamer;barrel;de novo protein;helical | null | null | 7bav(0.9983000159);8b15(0.9943000078);7bas(1);8b16(0.9983000159);6eiz(0.9937000275);6g68(0.9983000159);6g69(0.9983000159);4pn9(0.9954000115);6g6d(0.9951999784);7qwb(1);7qwe(0.9983000159);8a09(0.9983000159);7a1t(0.9952999949);7nfo(1);7qwa(1);6xy1(0.9965999722);7nfh(1);7bat(0.9937000275);7baw(0.9984999895);7bim(1);7bo8(1... | null | 7bau(0) | null | 7nfo(1) | null | 6.10.250.770;1.20.5.420;1.20.5.2620;1.20.5.1450;1.20.5.700;6.10.250.500;6.10.250.200;6.10.250.2150;6.10.250.880;6.10.250.270;1.20.5.3960;6.10.250.2060;6.10.250.1090;6.10.250.2370;6.10.250.1210;6.10.250.2720;1.20.5.470;6.10.250.1020;6.10.250.1440;1.20.5.1610;6.10.250.160;6.10.250.850;6.10.250.490;6.10.250.380;1.20.5.110... | null |
7bav | 2021-04-28 | other | id:A,B,C,D,E;type:U;source:unknown;length:32;seq_nat:XGEIAQTLKEIAKTLKEIAYTLKEIAQTLKGX;seq_unnat:(ACE)GEIAQTLKEIAKTLKEIA(4BF)TLKEIAQTLKG(NH2) | 3,394.835 | P 21 21 21 | 43.734|51.831|55.040|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | W.M. Dawson;F.J.O. Martin;G.G. Rhys;K.L. Shelley;R.L. Brady;D.N. Woolfson | "Coiled coils 9-to-5: rational de novo design of alpha-helical barrels with tunable oligomeric states", Chem Sci, 12, 6923-6928 | 10.1039/d1sc00460c|34745518||2041-6520| | UK | A de novo pentameric coiled-coil assembly: cc-type2-(tglaid)4-w19brphe | alpha;pentamer;barrel;de novo protein;helical | null | null | 7bas(1);8b16(1);8b15(0.9746000171);8a09(0.9769999981);4pn9(1);6eiz(1);7a1t(1);7bau(0.97299999);7bim(1);7qwa(1);7qwd(1);7qwe(1);6xy1(1);7qwb(0.9769999981);4pna(1);7nfg(1);7nfj(1);5ez8(1);7nff(1);7nfl(1);7nfm(1);7nfo(0.9758999944);6g6d(0.9955000281);6yb2(1);7nfi(1);7nfp(1);7nfk(0.9769999981);6zt1(1);5ez9(1);6g6g(1);7baw(... | null | 7bav(0) | null | 7bas(1) | null | 6.10.250.770;1.20.5.420;1.20.5.2620;1.20.5.1450;1.20.5.700;6.10.250.500;6.10.250.200;6.10.250.2150;6.10.250.880;6.10.250.270;1.20.5.3960;6.10.250.2060;6.10.250.1090;6.10.250.2370;6.10.250.1210;6.10.250.2720;6.10.250.1020;6.10.250.1440;1.20.5.1610;6.10.250.160;6.10.250.850;6.10.250.490;6.10.250.380;1.20.5.110;1.20.5.250... | null |
7baw | 2021-04-28 | other | id:A,B,C,D,E,F,G;type:U;source:unknown;length:32;seq_nat:XGEIAQGIKEIAKGIKEIAWGIKEIAKGIKGX;seq_unnat:(ACE)GEIAQGIKEIAKGIKEIAWGIKEIAKGIKG(NH2) | 3,179.818 | P 21 2 21 | 37.456|50.434|126.608|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | W.M. Dawson;F.J.O. Martin;G.G. Rhys;K.L. Shelley;R.L. Brady;D.N. Woolfson | "Coiled coils 9-to-5: rational de novo design of alpha-helical barrels with tunable oligomeric states", Chem Sci, 12, 6923-6928 | 10.1039/d1sc00460c|34745518||2041-6520| | UK | A heptameric barrel state of a de novo coiled-coil assembly: cc-type2-(ggiaid)4 | de novo protein;alpha-helical;barrel | null | null | 7bat(1);7bim(1);7a1t(1);8a09(1);8b16(1);8b15(0.9947000146);4pn9(1);6eiz(1);7bas(1);7bau(1);6g6b(0.9941999912);4pna(1);6g6a(0.9988999963);6g6f(1);5ez8(1);7nfj(1);7nfk(1);6g69(1);7bav(1);6g6d(1);6xy1(1);5ez9(1);5ezc(1);5eze(1);6eik(1);7nfn(1);7qwe(1);7nfh(1);7nfo(1);7qwb(1);7qwd(1);7nfl(1);7bo9(1);6g68(1);7qwa(1);6g6g(1)... | null | 7baw(0) | null | 7bat(1) | null | null | null |
7bey | 2021-03-17 | other | id:A,C;type:U;source:unknown;length:50;seq_nat:XNLAALRSELQALRREGFSPERLAALESRLQALERRLAALRSRLQALRGX;seq_unnat:(ACE)NLAALRSELQALRREGFSPERLAALESRLQALERRLAALRSRLQALRG(NH2)|id:B,D;type:U;source:unknown;length:50;seq_nat:XGLCALRSELQALRREGFSPEELAALESELQALERELAALRSELQALRGX;seq_unnat:(ACE)GL(CSU)ALRSELQALRREGFSPEELAALESELQALEREL... | 5,462.353 | P 1 21 1 | 26.455|68.673|47.258|90.000|98.230|90.000 | X-RAY DIFFRACTION | null | E.A. Naudin;A.G. McEwen;S.K. Tan;P. Poussin-Courmontagne;J.L. Schmitt;C. Birck;W.F. DeGrado;V. Torbeev | "Acyl Transfer Catalytic Activity in De Novo Designed Protein with N-Terminus of alpha-Helix As Oxyanion-Binding Site", J.Am.Chem.Soc., 143, 3330-3339 | 10.1021/jacs.0c10053|33635059||1520-5126|JACSAT | US | Het-n2-so3- - de novo designed three-helix heterodimer with cysteine s-sulfate at the n2 position of the alpha-helix | de novo protein;acyl transfer activity;domain swapped dimer;oxyanion-binding site | 6z0m(87);6z0l(88) | null | 6z0l(0.9678000212) | null | 6z0l(88) | null | 6z0l(0.9678000212) | 3s4u(0.7835000157) | 1.10.287.1520;1.10.287.600;1.20.5.420;6.10.140.640;1.10.12.10;6.10.140.380;6.10.250.660;6.10.140.480;6.10.140.1970;1.10.287.690;1.10.287.650;1.10.287.1100;1.20.5.4010;1.10.287.3280;6.10.140.360;6.10.140.2110;6.10.250.890;1.10.287.190;1.10.286.70;1.10.880.10;6.10.250.2860;1.10.287.1130;4.10.860.20;1.10.287.2900;6.10.250... | null |
7bid | 2021-09-22 | other | id:A;type:D;source:synthetic construct;length:294;seq_nat:GSHMQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTV... | 30,354.143 | P 21 21 21 | 44.636|61.396|99.410|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | B. Mylemans;X.Y. Lee;I. Laier;C. Helsen;A.R.D. Voet | "Structure and stability of the designer protein WRAP-T and its permutants", Sci Rep, 11, 18867-18867 | 10.1038/s41598-021-98391-0|34552189||2045-2322| | UK | Crystal structure of v31wrap-t, a 7-bladed designer protein | synthetic construct;de novo protein | 7bie(560);7bif(548);7big(524);6y7o(244);6g6n(244);6g6m(244);6y7n(244);6y7p(244);6r5z(241);6g6o(178);6g6p(178);6g6q(106) | 2ymu(558);5yzv(218);5nnz(199);5mzh(198);2h9n(193);2o9k(193);2h9m(193);2cnx(193);5sxm(193);2co0(193);6ufx(192);6dy7(192);6u8l(192);6u5m(192);6uhy(192);6uoz(192);6uhz(192);6uj4(192);6uif(192);6u5y(192);6uik(192);6u8o(192);6pga(192);6pgb(192);6pgc(192);6pgd(192);6pge(192);6pgf(192);6dya(192);6pg4(192);6pg5(192);6pg7(192);... | 7bif(0.9559999704) | null | 7bie(560) | 2ymu(558) | 7bif(0.9559999704) | 5yzv(0.8309000134) | 2.40.10.500;2.110.10.10;2.20.25.650;2.40.128.630;2.40.128.650 | null |
7bie | 2021-09-22 | other | id:A,B;type:D;source:synthetic construct;length:333;seq_nat:MGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSP... | 34,346.523 | C 1 2 1 | 79.662|48.497|121.950|90.000|101.470|90.000 | X-RAY DIFFRACTION | null | B. Mylemans;X.Y. Lee;I. Laier;C. Helsen;A.R.D. Voet | "Structure and stability of the designer protein WRAP-T and its permutants", Sci Rep, 11, 18867-18867 | 10.1038/s41598-021-98391-0|34552189||2045-2322| | UK | Crystal structure of nvwrap-t, a 7-bladed symmetric propeller | synthetic construct;de novo protein | 7bid(564);7bif(560);7big(560);6g6n(266);6g6m(266);6y7n(266);6y7p(266);6y7o(265);6r5z(241);6g6o(198);6g6p(198);6g6q(106) | 2ymu(634);5yzv(229);8rl2(221);5nnz(219);5mzh(219);6dya(209);6u6w(209);5vfc(209);6u8b(209);6u80(209);2h6k(209);3ur4(209);4es0(209);4esg(209);4qqe(209);3smr(209);4erq(209);5eal(209);2h6n(209);4ql1(209);5eam(209);5eap(209);2h6q(209);5ear(209);4ia9(209);4ewr(209);4ery(209);4o45(209);3eg6(209);4erz(209);2h68(209);6ucs(209);... | null | 2ymu(0.9642000198) | 7bid(564) | 2ymu(634) | 7big(0.9465000033) | 2ymu(0.9642000198) | 2.130.10.150;2.20.25.400;2.120.10.10;6.20.70.10;6.20.50.30;2.115.10.20;2.120.10.80;2.120.10.60;2.115.10.10;2.20.70.70;2.120.10.70;2.40.128.630;2.130.10.10;2.110.10.10;2.20.25.510;2.130.10.30;2.20.25.10;2.120.10.30 | null |
7bif | 2021-09-22 | other | id:A,B,C,D;type:D;source:synthetic construct;length:291;seq_nat:MDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNR... | 30,071.877 | P 1 21 1 | 63.853|72.886|93.545|90.000|96.002|90.000 | X-RAY DIFFRACTION | null | B. Mylemans;X.Y. Lee;I. Laier;C. Helsen;A.R.D. Voet | "Structure and stability of the designer protein WRAP-T and its permutants", Sci Rep, 11, 18867-18867 | 10.1038/s41598-021-98391-0|34552189||2045-2322| | UK | Crystal structure of v22wrap-t, a 7-bladed designer protein | synthetic construct;de novo protein | 7bie(560);7bid(550);7big(537);6r5z(241);6y7o(239);6g6n(238);6g6m(238);6y7n(238);6y7p(238);6g6o(178);6g6p(178);6g6q(106) | 2ymu(558);5yzv(218);5nnz(200);5mzh(199);3ur4(198);4qqe(198);3smr(198);5eal(198);4ql1(198);5eam(198);5eap(198);5ear(198);4ia9(198);4o45(198);2h9n(198);2o9k(198);2h9m(198);6pg8(198);6pg9(198);6pg3(198);6pg6(198);2cnx(198);5sxm(198);3n0d(198);3n0e(198);2co0(198);2xl3(198);6kiv(198);6kix(198);7cfp(198);6kiw(198);7cfq(198);... | 7bid(0.9556999803) | null | 7bie(560) | 2ymu(558) | 7bid(0.9556999803) | 2ymu(0.8855999708) | 2.130.10.150;2.130.10.120;2.115.10.20;2.120.10.80;2.120.10.60;2.120.10.70;2.130.10.10;2.130.10.30;2.120.10.10;2.120.10.30 | null |
7big | 2021-09-22 | other | id:A,B;type:D;source:synthetic construct;length:291;seq_nat:MGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVTGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS... | 30,071.885 | P 21 21 21 | 64.933|81.484|87.424|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | B. Mylemans;X.Y. Lee;I. Laier;C. Helsen;A.R.D. Voet | "Structure and stability of the designer protein WRAP-T and its permutants", Sci Rep, 11, 18867-18867 | 10.1038/s41598-021-98391-0|34552189||2045-2322| | UK | Crystal structure of v13wrap-t, a 7-bladed designer protein | synthetic construct;de novo protein | 7bie(559);7bif(537);7bid(527);6y7o(243);6g6n(243);6g6m(243);6y7n(243);6y7p(243);6r5z(241);6g6o(182);6g6p(182);6g6q(108) | 2ymu(558);5yzv(229);2h9n(209);2o9k(209);2h9m(209);2cnx(209);5sxm(209);2co0(209);6ufx(208);6dy7(208);6u8l(208);6u5m(208);6uhy(208);6uoz(208);6uhz(208);6uj4(208);6uif(208);6u5y(208);6uik(208);6u8o(208);6pga(208);6pgb(208);6pgc(208);6pgd(208);6pge(208);6pgf(208);6dya(208);6pg4(208);6pg5(208);6pg7(208);6byn(208);6iam(208);... | null | null | 7bie(559) | 2ymu(558) | 7bie(0.9499999881) | 5yzv(0.8762000203) | 2.40.10.500;2.40.128.190;2.40.128.660;2.110.10.10;2.20.25.650;2.40.128.630;2.40.128.650 | null |
7bim | 2021-04-21 | other | id:A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j;type:U;source:unknown;length:32;seq_nat:XGEIAQGLKEIAKGLKEIAWGLKEIAQGLKGX;seq_unnat:(ACE)GEIAQGLKEIAKGLKEIAWGLKEIAQGLKG(NH2) | 3,178.767 | P 1 21 1 | 71.210|128.080|71.450|90.000|110.670|90.000 | X-RAY DIFFRACTION | null | W.M. Dawson;F.J.O. Martin;G.G. Rhys;K.L. Shelley;R.L. Brady;D.N. Woolfson | "Coiled coils 9-to-5: rational de novo design of alpha-helical barrels with tunable oligomeric states", Chem Sci, 12, 6923-6928 | 10.1039/d1sc00460c|34745518||2041-6520| | UK | A de novo designed nonameric coiled coil, cc-type2-(gglaid)4 | nonamer;synthetic;alpha-helical barrel;de novo protein;coiled coil | null | null | 7a1t(1);7baw(1);8a09(1);7bat(0.9973999858);4pn9(1);6eiz(0.9984999895);8b16(1);4pna(1);8b15(0.9959999919);7bas(1);7bav(1);5ez8(1);6xy1(1);7nff(1);7nfi(1);7nfj(1);7nfl(1);7nfm(1);7nfk(1);7nfg(1);7nfo(1);5ez9(1);6eik(1);6g6e(1);6yb2(1);7nfn(1);5eza(1);7qwa(1);7qwd(1);7qwe(1);5ezc(1);6g6f(1);6g6g(1);7qwb(0.9990000129);6g6d... | null | 7bim(0) | null | 7a1t(1) | 4kvt(0.855799973) | 1.20.5.420;1.20.5.430;1.20.5.2620;1.20.5.1450;1.20.5.700;6.10.250.500;6.10.250.200;6.10.250.2150;6.10.250.270;1.20.5.3960;6.10.250.2060;6.10.250.1090;6.10.250.2370;6.10.250.2720;6.10.250.1210;6.10.250.1020;6.10.250.1440;6.10.250.10;1.20.5.1610;6.10.250.850;6.10.250.490;6.10.250.380;1.20.5.110;1.20.5.250;1.20.5.460;1.20... | null |
7bo8 | 2021-05-19 | other | id:A,B,C,D,E,F;type:U;source:unknown;length:32;seq_nat:XGEFAQAVKEYAKAVKEYAYAVKEFAQAVKGX;seq_unnat:(ACE)GEFAQAVKEYAKAVKEYA(4BF)AVKEFAQAVKG(NH2) | 3,386.687 | P 21 21 21 | 31.150|53.250|111.880|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | G.G. Rhys;W.M. Dawson;J.L. Beesley;F.J.O. Martin;R.L. Brady;A.R. Thomson;D.N. Woolfson | "How Coiled-Coil Assemblies Accommodate Multiple Aromatic Residues", Biomacromolecules, 22, 2010-2019 | 10.1021/acs.biomac.1c00131|33881308||1526-4602| | US | A hexameric de novo coiled-coil assembly: cc-type2-(vayd)4-y3f-w19(brphe)-y24f | tyrosine-tyrosine interactions;synthetic peptide;homomeric assembly;de novo protein;coiled coil | null | null | 7bo9(1);6g6f(1);6g69(1);6g68(1);6g6b(0.9986000061);6g6c(1);7bau(0.980799973);6g6a(0.9987999797);6g6d(1);7baw(1);7boa(1);8b16(1);7bat(0.9952999949);6g65(0.9955999851);6g67(0.9979000092);6yb0(0.9771999717);7bav(0.9966999888);7qwa(0.9986000061);8b15(0.9682000279);6eiz(0.9955000281);7nfo(0.9761000276);7nfl(0.9983000159);6z... | null | 7bo8(0) | null | 7bo9(1) | null | 6.10.250.770;1.20.5.420;1.20.5.2620;1.20.5.1450;1.20.5.700;6.10.250.500;6.10.250.200;6.10.250.2150;6.10.250.880;6.10.250.270;6.10.250.2720;6.10.250.2060;6.10.250.1090;1.20.5.3960;6.10.250.2370;6.10.250.1210;6.10.250.1020;6.10.250.1440;1.20.5.1610;6.10.250.160;6.10.250.850;6.10.250.490;6.10.250.380;1.20.5.110;1.20.5.250... | null |
7bo9 | 2021-05-19 | other | id:A,B,C,D,E,F;type:U;source:unknown;length:32;seq_nat:XGEFAQAVKEYAKAVKEYAYAVKEYAQAVKGX;seq_unnat:(ACE)GEFAQAVKEYAKAVKEYA(4BF)AVKEYAQAVKG(NH2) | 3,402.687 | P 21 21 21 | 44.630|50.900|69.430|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | G.G. Rhys;W.M. Dawson;J.L. Beesley;F.J.O. Martin;R.L. Brady;A.R. Thomson;D.N. Woolfson | "How Coiled-Coil Assemblies Accommodate Multiple Aromatic Residues", Biomacromolecules, 22, 2010-2019 | 10.1021/acs.biomac.1c00131|33881308||1526-4602| | US | A hexameric de novo coiled-coil assembly: cc-type2-(vayd)4-y3f-w19(brphe) | tyrosine-tyrosine interactions;synthetic peptide;homomeric assembly;de novo protein;coiled coil | null | null | 7bo8(1);6g6f(1);6g69(1);6g68(1);6g6b(0.9986000061);6g6c(1);7bau(0.9952999949);6g6d(0.9983000159);8b16(1);6g6a(0.9927999973);7bat(0.9921000004);7baw(1);6g65(0.9980000257);7bas(1);7bav(1);7qwa(1);7qwd(1);7qwe(1);6yb0(0.9775999784);8b15(0.9860000014);6g67(0.9975000024);6zt1(1);7a1t(1);7nfl(1);7nff(1);7nfo(0.989199996);7nf... | null | 7bo9(0) | null | 7bo8(1) | null | 6.10.250.770;1.20.5.420;1.20.5.2620;1.20.5.1450;1.20.5.700;6.10.250.500;6.10.250.200;6.10.250.2150;6.10.250.880;6.10.250.270;6.10.250.2720;6.10.250.2060;6.10.250.1090;1.20.5.3960;6.10.250.1210;6.10.250.2370;6.10.250.1020;6.10.250.1440;1.20.5.1610;6.10.250.160;6.10.250.850;6.10.250.490;6.10.250.380;1.20.5.110;1.20.5.250... | null |
7boa | 2021-05-19 | other | id:A,B,C,D,E,F,G,H;type:U;source:unknown;length:32;seq_nat:XGEFAQAYKEFAKAYKEFAYAYKEFAQAYKGX;seq_unnat:(ACE)GEFAQAYKEFAKAYKEFA(4BF)AYKEFAQAYKG(NH2) | 3,610.858 | P 21 21 21 | 40.707|75.608|88.123|90.000|90.000|90.000 | X-RAY DIFFRACTION | null | G.G. Rhys;W.M. Dawson;J.L. Beesley;F.J.O. Martin;R.L. Brady;A.R. Thomson;D.N. Woolfson | "How Coiled-Coil Assemblies Accommodate Multiple Aromatic Residues", Biomacromolecules, 22, 2010-2019 | 10.1021/acs.biomac.1c00131|33881308||1526-4602| | US | A hexameric de novo coiled-coil assembly: cc-type2-(yafd)4-w19(brphe) | tyrosine-tyrosine interactions;synthetic peptide;homomeric assembly;de novo protein;coiled coil | null | null | 6g6f(0.9983999729);6g6e(1);6yb2(1);7a1t(1);7bav(1);7nfi(0.9955999851);7nfj(1);7qwd(1);7qwe(1);6zt1(1);7bas(0.9940000176);7bau(0.9775000215);7nfg(0.9986000061);7qwa(1);4pn9(0.9986000061);6g68(1);6g6d(1);7baw(1);7bo8(1);7nfm(0.9986000061);5ez8(1);6eiz(0.9855999947);6g6a(0.996900022);6xy1(0.9983999729);7bat(0.9900000095);... | null | 7boa(0) | null | 6yb2(1) | null | 6.10.250.1960;6.10.250.770;1.20.5.420;1.20.5.2620;1.20.5.1450;6.10.250.1560;1.20.5.700;6.10.250.500;6.10.250.2150;6.10.250.200;6.10.250.880;6.10.250.270;6.10.250.2720;6.10.250.2060;1.20.5.590;6.10.250.1090;6.10.250.1210;1.20.5.3960;6.10.250.2370;6.10.250.1020;6.10.250.400;6.10.250.1440;1.20.5.1610;6.10.250.160;6.10.250... | null |
7bpl | 2021-03-24 | other | id:A;type:D;source:synthetic construct;length:111;seq_nat:GDADKIMEQAKRQDPNAQVYKVTTPDEIEEAVRRIEKYGAQVVLIIYTSSGIVILVAVRDPSQADQILKEAKKQNPSATFVRLEGVSPDDLRRQVEDVWRGSLEHHHHHH;seq_unnat:GDADKIMEQAKRQDPNAQVYKVTTPDEIEEAVRRIEKYGAQVVLIIYTSSGIVILVAVRDPSQADQILKEAKKQNPSATFVRLEGVSPDDLRRQVEDVWRGSLEHHHHHH | 12,525.046 | null | ||||| | SOLUTION NMR | null | S. Minami;N. Kobayashi;T. Sugiki;T. Nagashima;T. Fujiwara;R. Koga;G. Chikenji;N. Koga | "Exploration of novel alpha-beta-protein folds through de novo design", Nat.Struct.Mol.Biol. | 10.1038/s41594-023-01029-0|||1545-9985| | US | Solution nmr structure of nf1; de novo designed protein with a novel fold | de novo protein | 2l69(53) | null | null | null | 2l69(53) | null | 7bqe(0.4232000113) | 3mgj(0.4318000078) | null | null |
7bpm | 2021-03-24 | other | id:A;type:D;source:synthetic construct;length:76;seq_nat:GTEIELESKNGQREHYTATSEDEARKIIEKAVRRGIKRIELRGASEQLIRDMQEIAKQIGLQYRTDGSLEHHHHHH;seq_unnat:GTEIELESKNGQREHYTATSEDEARKIIEKAVRRGIKRIELRGASEQLIRDMQEIAKQIGLQYRTDGSLEHHHHHH | 8,886.904 | null | ||||| | SOLUTION NMR | null | S. Minami;N. Kobayashi;T. Sugiki;T. Nagashima;T. Fujiwara;R. Koga;G. Chikenji;N. Koga | "Exploration of novel alpha-beta-protein folds through de novo design", Nat.Struct.Mol.Biol. | 10.1038/s41594-023-01029-0|||1545-9985| | US | Solution nmr structure of nf2; de novo designed protein with a novel fold | de novo protein;de novo designed protein | null | null | null | null | 2ln3(37) | null | 7qsw(0.6116999984) | 4joq(0.6097999811) | 3.30.1490.170;3.30.160.600;3.10.20.10;6.20.250.30;3.30.160.330;3.30.160.60 | null |
7bpn | 2021-03-24 | other | id:A;type:D;source:synthetic construct;length:125;seq_nat:GQIQYFNVDENPEQVRKLIEQAGLDPDELREAEVIIIIISRTPEQLEKLSRQVKELGADRLLEFNVDENPEQASKLAKTAGISEKQLREADYIILILVRDEKKAKKFADSLRKKGSLEHHHHHH;seq_unnat:GQIQYFNVDENPEQVRKLIEQAGLDPDELREAEVIIIIISRTPEQLEKLSRQVKELGADRLLEFNVDENPEQASKLAKTAGISEKQLREADYIILILVRDEKKAKKFADSLRKKGSLEHHHHHH | 14,352.258 | null | ||||| | SOLUTION NMR | null | S. Minami;N. Kobayashi;T. Sugiki;T. Nagashima;T. Fujiwara;R. Koga;G. Chikenji;N. Koga | "Exploration of novel alpha-beta-protein folds through de novo design", Nat.Struct.Mol.Biol. | 10.1038/s41594-023-01029-0|||1545-9985| | US | Solution nmr structure of nf7; de novo designed protein with a novel fold | de novo protein;de novo designed protein | null | null | null | null | 7bqd(42) | null | 2lvb(0.4135999978) | 4mje(0.4266000092) | null | null |
7bpp | 2021-03-24 | other | id:A;type:D;source:synthetic construct;length:110;seq_nat:GEDDEILQRAKDILKEDPNRKILIILNPDGKIELYEVTSEEDIKRIAKKAGISEELLRRILQSFRDGQYDLFFIAKTEDDERRARELKERMGKPVEILRGSLEHHHHHH;seq_unnat:GEDDEILQRAKDILKEDPNRKILIILNPDGKIELYEVTSEEDIKRIAKKAGISEELLRRILQSFRDGQYDLFFIAKTEDDERRARELKERMGKPVEILRGSLEHHHHHH | 12,920.676 | null | ||||| | SOLUTION NMR | null | S. Minami;N. Kobayashi;T. Sugiki;T. Nagashima;T. Fujiwara;R. Koga;G. Chikenji;N. Koga | "Exploration of novel alpha-beta-protein folds through de novo design", Nat.Struct.Mol.Biol. | 10.1038/s41594-023-01029-0|||1545-9985| | US | Solution nmr structure of nf5; de novo designed protein with a novel fold | de novo protein;de novo designed protein | 7bqb(61) | null | null | null | 7bqb(61) | null | 7bqb(0.5206000209) | 3ukt(0.4273999929) | 6.10.250.1960;4.10.180.60;6.10.250.400;1.20.5.640;4.10.180.10;3.10.20.10;6.10.250.1560;1.20.5.220;6.10.250.1110;6.10.250.1990 | null |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.