MedSightAI / backend /ml /registry.py
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feat: clinical Grad-CAM heatmap, Gemini chat integration, HF model auto-download
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import asyncio
import time
import logging
from dataclasses import dataclass
from datetime import datetime, timezone
from typing import Literal, Any
from backend.core.config import settings
from backend.core.logging_config import ml_logger
logger = logging.getLogger(__name__)
@dataclass
class ModelProfile:
name: str
hf_model_id: str
local_cache_subdir: str
device_preference: Literal["cuda", "cpu", "auto"]
vram_mb: int
ram_mb: int
load_priority: int
is_required: bool
MODEL_PROFILES = {
"convae_anomaly": ModelProfile(
name="convae_anomaly", hf_model_id="local/chest-convae", local_cache_subdir="convae",
device_preference="cpu", vram_mb=50, ram_mb=50, load_priority=1, is_required=True
),
"scispacy_ner": ModelProfile(
name="scispacy_ner", hf_model_id="en_core_sci_sm", local_cache_subdir="scispacy",
device_preference="cpu", vram_mb=0, ram_mb=100, load_priority=2, is_required=True
),
"whisper_tiny": ModelProfile(
name="whisper_tiny", hf_model_id="openai/whisper-tiny", local_cache_subdir="whisper",
device_preference="cpu", vram_mb=0, ram_mb=300, load_priority=3, is_required=False
),
"biogpt_base": ModelProfile(
name="biogpt_base", hf_model_id="microsoft/biogpt", local_cache_subdir="biogpt",
device_preference="cpu", vram_mb=0, ram_mb=700, load_priority=4, is_required=False
),
"minilm": ModelProfile(
name="minilm", hf_model_id="sentence-transformers/all-MiniLM-L6-v2", local_cache_subdir="minilm",
device_preference="cpu", vram_mb=0, ram_mb=100, load_priority=1, is_required=True
),
"classifier": ModelProfile(
name="classifier", hf_model_id="valhalla/distilbart-mnli-12-1", local_cache_subdir="classifier",
device_preference="cpu", vram_mb=0, ram_mb=300, load_priority=5, is_required=False
),
}
@dataclass
class ModelState:
profile: ModelProfile
model: Any = None
tokenizer: Any = None
head: Any = None # Extension for DINO head architecture
stats: dict = None # Extension for anomaly scoring
is_loaded: bool = False
is_loading: bool = False
load_error: str | None = None
load_time_ms: int = 0
last_used: datetime | None = None
current_device: str = "unloaded"
@property
def is_available(self) -> bool:
return self.is_loaded and self.load_error is None and self.model is not None
class ModelRegistry:
def __init__(self):
self._states: dict[str, ModelState] = {
name: ModelState(profile=profile) for name, profile in MODEL_PROFILES.items()
}
self._locks: dict[str, asyncio.Lock] = {
name: asyncio.Lock() for name in MODEL_PROFILES
}
self._gpu_budget_mb = settings.GPU_VRAM_BUDGET_MB
async def startup_load(self):
ml_logger.logger.info("Starting model registry startup")
sorted_models = sorted(MODEL_PROFILES.values(), key=lambda m: m.load_priority)
for profile in sorted_models:
if profile.device_preference == "cpu":
await self._load_model(profile.name)
else:
if self._get_used_vram() + profile.vram_mb <= self._gpu_budget_mb:
await self._load_model(profile.name)
else:
ml_logger.logger.warning(f"Skipping GPU load for {profile.name}: VRAM budget exceeded. Will load on CPU on first request.")
loaded = [n for n, s in self._states.items() if s.is_available]
failed = [n for n, s in self._states.items() if s.load_error]
required_failed = [n for n in failed if MODEL_PROFILES[n].is_required]
if required_failed:
raise RuntimeError(f"Critical models failed to load: {required_failed}. Check logs.")
ml_logger.logger.info("Registry startup complete", extra={"loaded": loaded, "failed": failed, "vram_used_mb": self._get_used_vram()})
async def get(self, model_name: str) -> ModelState:
if model_name not in self._states:
raise ValueError(f"Unknown model: {model_name}")
state = self._states[model_name]
if not state.is_available and not state.is_loading:
await self._load_model(model_name)
self._states[model_name].last_used = datetime.now(timezone.utc)
return self._states[model_name]
def is_available(self, model_name: str) -> bool:
return self._states.get(model_name, ModelState(ModelProfile("","","","cpu",0,0,0,False))).is_available
async def _load_model(self, model_name: str):
async with self._locks[model_name]:
state = self._states[model_name]
if state.is_available:
return
state.is_loading = True
start_time = time.monotonic()
try:
profile = state.profile
device = self._resolve_device(profile)
if device == "cuda":
needed = profile.vram_mb
available = self._gpu_budget_mb - self._get_used_vram()
if available < needed:
evicted = await self._evict_lru_gpu_model(except_model=model_name)
if evicted:
ml_logger.logger.info(f"Evicted {evicted} to make room for {model_name}")
# Fetch objects securely
result = await asyncio.to_thread(self._load_model_sync, model_name, profile, device)
load_time_ms = int((time.monotonic() - start_time) * 1000)
state.model = result.get('model')
state.tokenizer = result.get('tokenizer')
state.head = result.get('head')
state.stats = result.get('stats')
state.is_loaded = True
state.load_error = None
state.load_time_ms = load_time_ms
state.current_device = device
ml_logger.log_model_load(model_name, device, load_time_ms, vram_delta_mb=profile.vram_mb if device == "cuda" else None)
except Exception as e:
state.load_error = str(e)
state.is_loaded = False
ml_logger.logger.error(f"Failed to load model {model_name}: {e}", exc_info=True)
if MODEL_PROFILES[model_name].is_required:
raise
finally:
state.is_loading = False
def _load_model_sync(self, name: str, profile: ModelProfile, device: str) -> dict:
cache_dir = settings.MODEL_CACHE_DIR / profile.local_cache_subdir
cache_dir.mkdir(parents=True, exist_ok=True)
if name == "convae_anomaly":
from backend.ml.vision import model_paths as mp
try:
backend, reason = mp.resolve_vision_backend()
except FileNotFoundError as exc:
logger.error("%s", exc)
raise
stats_path = mp.resolve_anomaly_stats_path()
stats = mp.load_stats(stats_path)
if backend == "none":
logger.warning(
"No vision artifacts found (pulmonary .pth or ONNX) under %s or MODEL_CACHE_DIR; vision uses demo fallback.",
settings.TRAINED_MODEL_OUTPUT_DIR,
)
return {"model": None, "tokenizer": None, "stats": stats}
if backend == "pulmonary":
ckpt_path = mp.resolve_pulmonary_checkpoint_path()
if not ckpt_path:
return {"model": None, "tokenizer": None, "stats": stats}
from backend.ml.vision.pulmonary_anomaly import load_pulmonary_detector
import torch
device = "cuda" if torch.cuda.is_available() else "cpu"
logger.info("Loading pulmonary detector from %s (%s)", ckpt_path, reason)
wrapper = load_pulmonary_detector(ckpt_path, device=device)
return {
"model": wrapper,
"tokenizer": None,
"stats": {"threshold": wrapper.threshold, "backend": "pulmonary"},
}
if backend == "onnx":
import onnxruntime as ort
onnx_path = mp.resolve_onnx_path()
if not onnx_path:
return {"model": None, "tokenizer": None, "stats": stats}
logger.info("Loading ConvAE ONNX from %s (%s)", onnx_path, reason)
session = ort.InferenceSession(str(onnx_path))
return {"model": session, "tokenizer": None, "stats": stats}
return {"model": None, "tokenizer": None, "stats": stats}
elif name == "scispacy_ner":
import spacy
try:
nlp = spacy.load(profile.hf_model_id)
except OSError:
logger.warning(f"scispaCy model {profile.hf_model_id} not found. Use 'python -m spacy download {profile.hf_model_id}'")
return {"model": None, "tokenizer": None}
return {"model": nlp, "tokenizer": None}
elif name == "whisper_tiny":
import whisper
model = whisper.load_model("tiny", device="cpu", download_root=str(cache_dir))
return {"model": model, "tokenizer": None}
elif name == "biogpt_base":
try:
import os
old_offline = os.environ.get("HF_HUB_OFFLINE")
os.environ["HF_HUB_OFFLINE"] = "1"
try:
from transformers import BioGptForCausalLM, BioGptTokenizer
tokenizer = BioGptTokenizer.from_pretrained(profile.hf_model_id, cache_dir=cache_dir, local_files_only=True)
model = BioGptForCausalLM.from_pretrained(profile.hf_model_id, cache_dir=cache_dir, local_files_only=True)
model.eval()
return {"model": model, "tokenizer": tokenizer}
finally:
if old_offline is None:
os.environ.pop("HF_HUB_OFFLINE", None)
else:
os.environ["HF_HUB_OFFLINE"] = old_offline
except Exception as e:
logger.warning(f"BioGPT failed to load (offline/no cache): {e}. Report generation will use template fallback.")
return {"model": None, "tokenizer": None}
elif name == "minilm":
try:
from sentence_transformers import SentenceTransformer
import os
old_offline = os.environ.get("HF_HUB_OFFLINE")
os.environ["HF_HUB_OFFLINE"] = "1"
try:
model = SentenceTransformer(profile.hf_model_id, cache_folder=str(cache_dir))
finally:
if old_offline is None:
os.environ.pop("HF_HUB_OFFLINE", None)
else:
os.environ["HF_HUB_OFFLINE"] = old_offline
return {"model": model, "tokenizer": None}
except Exception as e:
logger.warning(f"SentenceTransformer failed to load (offline/timeout): {e}. Using Mock.")
class MockEncoder:
def encode(self, texts, **kwargs):
import numpy as np
return np.random.rand(len(texts), 384)
return {"model": MockEncoder(), "tokenizer": None}
elif name == "biomedvlp":
# This model is very heavy (900MB). We load it only if explicitly requested or if RAM is high.
from transformers import AutoModel, AutoTokenizer
# Skip loading if we are in a tight environment
return {"model": None, "tokenizer": None}
elif name == "classifier":
try:
import os
old_offline = os.environ.get("HF_HUB_OFFLINE")
os.environ["HF_HUB_OFFLINE"] = "1"
try:
from transformers import pipeline
pipe = pipeline(
"zero-shot-classification",
model=profile.hf_model_id,
device=-1,
model_kwargs={"local_files_only": True}
)
return {"model": pipe, "tokenizer": None}
finally:
if old_offline is None:
os.environ.pop("HF_HUB_OFFLINE", None)
else:
os.environ["HF_HUB_OFFLINE"] = old_offline
except Exception as e:
logger.warning(f"Classifier failed to load (offline/no cache): {e}. Using rule-based classification.")
return {"model": None, "tokenizer": None}
else:
raise ValueError(f"No loader defined for model: {name}")
def _resolve_device(self, profile: ModelProfile) -> str:
if profile.device_preference == "cpu":
return "cpu"
import torch
if profile.device_preference == "cuda":
if not torch.cuda.is_available():
ml_logger.logger.warning(f"CUDA not available, loading {profile.name} on CPU")
return "cpu"
return "cuda"
if profile.device_preference == "auto":
if torch.cuda.is_available():
free_vram = self._gpu_budget_mb - self._get_used_vram()
if free_vram >= profile.vram_mb:
return "cuda"
return "cpu"
def _get_used_vram(self) -> int:
return sum(s.profile.vram_mb for s in self._states.values() if s.is_available and s.current_device == "cuda")
async def _evict_lru_gpu_model(self, except_model: str) -> str | None:
gpu_models = [
(name, state) for name, state in self._states.items()
if state.is_available and state.current_device == "cuda" and name != except_model
]
if not gpu_models:
return None
lru_name, _ = min(gpu_models, key=lambda x: x[1].last_used or datetime.min.replace(tzinfo=timezone.utc))
await asyncio.to_thread(self._move_to_cpu, lru_name)
return lru_name
def _move_to_cpu(self, model_name: str):
state = self._states[model_name]
if state.model is not None and hasattr(state.model, "cpu"):
import torch
state.model = state.model.cpu()
torch.cuda.empty_cache()
state.current_device = "cpu"
ml_logger.logger.info(f"Moved {model_name} to CPU")
def get_status(self) -> dict:
return {
"models": {
name: {
"is_available": state.is_available,
"device": state.current_device,
"load_error": state.load_error,
"load_time_ms": state.load_time_ms,
"last_used": state.last_used.isoformat() if state.last_used else None,
"vram_mb": state.profile.vram_mb if state.current_device == "cuda" else 0
}
for name, state in self._states.items()
},
"gpu_budget_mb": self._gpu_budget_mb,
"gpu_used_mb": self._get_used_vram(),
"gpu_free_mb": self._gpu_budget_mb - self._get_used_vram()
}
model_registry = ModelRegistry()