Instructions to use gayanin/med_masked_pubmed_articles_biogpt_large with libraries, inference providers, notebooks, and local apps. Follow these links to get started.

Libraries

How to use gayanin/med_masked_pubmed_articles_biogpt_large with Transformers:

# Use a pipeline as a high-level helper
from transformers import pipeline

pipe = pipeline("text-generation", model="gayanin/med_masked_pubmed_articles_biogpt_large")

# Load model directly
from transformers import AutoTokenizer, AutoModelForCausalLM

tokenizer = AutoTokenizer.from_pretrained("gayanin/med_masked_pubmed_articles_biogpt_large")
model = AutoModelForCausalLM.from_pretrained("gayanin/med_masked_pubmed_articles_biogpt_large")

Notebooks
Google Colab
Kaggle
Local Apps Settings

vLLM

How to use gayanin/med_masked_pubmed_articles_biogpt_large with vLLM:

Install from pip and serve model

# Install vLLM from pip:
pip install vllm
# Start the vLLM server:
vllm serve "gayanin/med_masked_pubmed_articles_biogpt_large"
# Call the server using curl (OpenAI-compatible API):
curl -X POST "http://localhost:8000/v1/completions" \
	-H "Content-Type: application/json" \
	--data '{
		"model": "gayanin/med_masked_pubmed_articles_biogpt_large",
		"prompt": "Once upon a time,",
		"max_tokens": 512,
		"temperature": 0.5
	}'

Use Docker

docker model run hf.co/gayanin/med_masked_pubmed_articles_biogpt_large

SGLang

How to use gayanin/med_masked_pubmed_articles_biogpt_large with SGLang:

Install from pip and serve model

# Install SGLang from pip:
pip install sglang
# Start the SGLang server:
python3 -m sglang.launch_server \
    --model-path "gayanin/med_masked_pubmed_articles_biogpt_large" \
    --host 0.0.0.0 \
    --port 30000
# Call the server using curl (OpenAI-compatible API):
curl -X POST "http://localhost:30000/v1/completions" \
	-H "Content-Type: application/json" \
	--data '{
		"model": "gayanin/med_masked_pubmed_articles_biogpt_large",
		"prompt": "Once upon a time,",
		"max_tokens": 512,
		"temperature": 0.5
	}'

Use Docker images

docker run --gpus all \
    --shm-size 32g \
    -p 30000:30000 \
    -v ~/.cache/huggingface:/root/.cache/huggingface \
    --env "HF_TOKEN=<secret>" \
    --ipc=host \
    lmsysorg/sglang:latest \
    python3 -m sglang.launch_server \
        --model-path "gayanin/med_masked_pubmed_articles_biogpt_large" \
        --host 0.0.0.0 \
        --port 30000
# Call the server using curl (OpenAI-compatible API):
curl -X POST "http://localhost:30000/v1/completions" \
	-H "Content-Type: application/json" \
	--data '{
		"model": "gayanin/med_masked_pubmed_articles_biogpt_large",
		"prompt": "Once upon a time,",
		"max_tokens": 512,
		"temperature": 0.5
	}'

Docker Model Runner
How to use gayanin/med_masked_pubmed_articles_biogpt_large with Docker Model Runner:
```
docker model run hf.co/gayanin/med_masked_pubmed_articles_biogpt_large
```

med_masked_pubmed_articles_biogpt_large

This model is a fine-tuned version of microsoft/BioGPT-Large-PubMedQA on an unknown dataset. It achieves the following results on the evaluation set:

Loss: 3.2545
Rouge2 Precision: 0.7011
Rouge2 Recall: 0.6931
Rouge2 Fmeasure: 0.6959

Model description

More information needed

Intended uses & limitations

More information needed

Training and evaluation data

More information needed

Training procedure

Training hyperparameters

The following hyperparameters were used during training:

learning_rate: 2e-05
train_batch_size: 16
eval_batch_size: 16
seed: 42
optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
lr_scheduler_type: linear
num_epochs: 10
mixed_precision_training: Native AMP

Training results

Training Loss	Epoch	Step	Validation Loss	Rouge2 Precision	Rouge2 Recall	Rouge2 Fmeasure
3.0566	1.0	7914	3.0375	0.7013	0.6931	0.6959
2.911	2.0	15828	3.0228	0.7013	0.6931	0.6959
2.7386	3.0	23742	3.0594	0.7011	0.6931	0.6959
2.5718	4.0	31656	3.1371	0.7011	0.6931	0.6959
2.4573	5.0	39570	3.2545	0.7011	0.6931	0.6959

Framework versions

Transformers 4.26.1
Pytorch 1.13.1+cu116
Datasets 2.9.0
Tokenizers 0.13.2

Downloads last month: 4