Datasets:
query_name string | source_chrom string | source_start int64 | source_end int64 | region_label string | species string | alignment_name string | assembly string | taxonomy_id int64 | family string | clade string | phylogenetic_rank int64 | alignment_source string | t_chrom string | t_start int64 | t_end int64 | t_strand string | t_src_size int64 | pre_resize_t_start int64 | pre_resize_t_end int64 | fragment_count int64 | aligned_bases int64 | sequence string | augmentation string |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
win_chr20_000500384 | chr20 | 64,049,024 | 64,049,279 | cds | Erinaceus europaeus | Erinaceus_europaeus | GCF_000296755.1 | 9,365 | Erinaceidae | mammals | 1 | zoonomia_cactus | JH835526.1 | 1,698,523 | 1,698,778 | + | 3,267,260 | 1,698,548 | 1,698,752 | 12 | 192 | AAGTGTCCTCCCACCTATCTGCCCCATGCCCCTGTCCCCCATcattctgtccccccccccccgtctatgTGCCCCCTGCCCGCGTCCCCGCGTCCCGTCCGCACTCACCCAGCATCTTGCTGAGCACAGCGTTGTGCAGGTCGGGGTTCTGCTGCGCCAGGCGCTTGCGCTCATCCTTAGCCCACACCATGAAGGCGTTCATGGGCCGCCGGATGCGGGACTCGTCGGGCGGGCGCTCCCCGCGGGCAGCCCCGG | + |
win_chr15_000634997 | chr15 | 81,279,488 | 81,279,743 | cds | Odocoileus virginianus | Odocoileus_virginianus | GCA_002102435.1 | 9,874 | Cervidae | mammals | 1 | zoonomia_cactus | KZ103677.1 | 11,067 | 11,322 | + | 44,726 | 11,047 | 11,342 | 8 | 234 | TGGCGGGCGCCCCGGGGCTCTCCAGGACGAAGGGGCCGCAGTCCTTGGTGATGCAGGTACTGGAGCTCAGGGAACGGCACAGTGGGGGTGACAGGTGGCTGCCCAGGGAGTGGGGGGCCGTCAGGCGGGTCCTGACCGTGAGGGTGAGCAGCCCCTTTTTGGCTTGCTGAAATAGACAGGGTCACAGCTTAGAGCAGCAGCTCAGGGCAAGGCcgatattttctttattactatttttttgtaaataacagTAGC | - |
win_chr1_001348059 | chr1 | 172,551,424 | 172,551,679 | cds | Antilocapra americana | Antilocapra_americana | GCA_004027515.1 | 9,891 | Antilocapridae | mammals | 1 | zoonomia_cactus | AntAmePen_scaffold_21128 | 60,280 | 60,535 | - | 68,792 | 60,293 | 60,522 | 8 | 224 | CCAGACATTTTGAGAAGACAGAAAGCTAATACACAAATTACAACTTCATCTTTATTTAAGGTACCTTTTCCTGGGATTGTACATCTTCATTTTCTAGTGCACAATTGTCATCTTTAGAGTAATATGATGAAGCTGAAGAACTTTCTTTACAACACACATGCCAACTGGGAAGCCTGTAAAACATCCACCGTCATCATCAAAGAAAAAAAAAAGGTTGTTAAATCAACATATTCCATACAATGAACTAGAATTTGA | - |
win_chr9_000816688 | chr9 | 104,535,936 | 104,536,191 | cds | Gadus morhua | gadMor1 | GadMor_May2010/gadMor1 | 8,049 | Gadidae | ray-finned_fish | 6 | ucsc_multiz100way | HE567241 | 988,732 | 988,987 | - | 1,133,452 | 988,736 | 988,983 | 14 | 205 | TTTCTGCAACAATCCAGCAATGACAAAACTGCTCTGTGATGACACAAAGTTCAATAACTACTTTGGCTTGTTTTTCCTTGCCGTAATTCAAGGAATGCCGCTGGTTATagtaacatacacatacattcagaTCTTGTTGACTTGTATGATGACGAAGCAGGCTGATGCGAGAGGGAAAGCTCTCCAAACATGTGGAACACATCTGgtggtttttttattctttgaattCAATGCTGCCATCACTTTGATCTCTCA | - |
win_chr3_000373802 | chr3 | 47,846,528 | 47,846,783 | cds | Lycaon pictus | Lycaon_pictus | GCA_001887905.1 | 9,622 | Canidae | mammals | 1 | zoonomia_cactus | CM007585.1 | 41,105,244 | 41,105,499 | - | 58,133,239 | 41,105,244 | 41,105,499 | 1 | 255 | TAATTATCACTCAGCCGCGCCGCATCTCCGCCGTGTCCGTGGCACAGCGGGTCAGCCACGAACTGGGCCCCTCTTTGCGCCGGAATGTGGGCTTCCAGGTACGGCTGGAGAGCAAGCCCCCGGCCCGCGGCGGGGCCCTGCTCTTCTGCACCGTGGGCATCCTGCTGCGGAAGCTGCAGAGCAACCCCAGCCTGGAGGGCGTGAGCCATGTCATCGTGGATGAGGTCCACGAGCGGGACGTGAATACAGACTTCC | + |
win_chr14_000527139 | chr14 | 67,473,664 | 67,473,919 | cds | Nycticebus coucang | Nycticebus_coucang | GCA_004027815.1 | 9,470 | Lorisidae | mammals | 1 | zoonomia_cactus | k141_1432500 | 4,647 | 4,902 | - | 11,877 | 4,647 | 4,902 | 1 | 255 | CTTCTGCAGAACCTCTGACGGCGCTGTCCCGCTGGTACCTATACGCCATCCACGGCTACTTCTGCGAGGTGATGTTCACAGCAGCCTGGGAGTTTGTGGTGAACTTGAACTGGAAGTTCCCGGGGGTCACGAGCGTGTGGGCCCTCTTCATCTATGGCACGTCCATCCTCATCGTGGAACGCATGTACCTGCGCCTGCGTGGCCGCTGCCCGCTCCTGGTGCGCTGCCTCATCTATACACTCTGGACCTACCTGT | - |
win_chr3_000081031 | chr3 | 10,371,840 | 10,372,095 | cds | Tolypeutes matacus | Tolypeutes_matacus | GCA_004025125.1 | 183,749 | Chlamyphoridae | mammals | 1 | zoonomia_cactus | TolMat_scaffold_322660 | 4,904 | 5,159 | - | 5,358 | 4,903 | 5,159 | 2 | 255 | CGATGGCATTGACCAGCAGCTCCATGGTCTTGGCGTTGATGGAGCTGGGGTCGGGGACTTCCTTGTGGTGGATGTCGCCGACGTACGCTTGCACCACTGTCATGCGGTTGGTGGTCAGCGTGCCTGTCTTGTCTGAGCAGATGGCCGTGGCATTGCCCATGGTCTCACAGGCATCCAGGTGGCGGACCAGGTTGTTGTCCTTCATCATTTTCTGGGAGAAGAGGCAGGTGAGGGGGCGACAGTGAGGAGAGGGAG | + |
win_chr12_000381064 | chr12 | 48,776,064 | 48,776,319 | cds | Odocoileus virginianus | Odocoileus_virginianus | GCA_002102435.1 | 9,874 | Cervidae | mammals | 1 | zoonomia_cactus | KZ100239.1 | 459,226 | 459,481 | - | 541,479 | 459,227 | 459,479 | 8 | 249 | AGCTTGGCCAGCATGGCCTTCTCCTCTTTCTGTGTGGACAGCACAGGTACAGGCTGGGAAGAAGTGCCCAAAGAAGGCCTCTGCTTGCTCCCTCCatctgcccctctccccagctgCCTTGCCTTCCCCAACCCGACCCTGACCCGTTTCTGGCTGGCTCCCAGGATGAGGAAGGTCTCAATGTGCTGCTCCTTGAGGTAGGCGTTGCGCTCCCCGCCGCGGCCCGGCTCCACCTCATAGTCCCCATTCAGGTAC | + |
win_chr14_000823984 | chr14 | 105,469,824 | 105,470,079 | cds | Tupaia tana | Tupaia_tana | GCA_004365275.1 | 70,687 | Tupaiidae | mammals | 1 | zoonomia_cactus | TupTan_flattened_line_3626 | 24,275 | 24,530 | + | 41,310 | 24,261 | 24,544 | 11 | 237 | CCTGTGGGCGCGGGCGGCGGTGAGTGGGGAGGCCCCGGGGCTGCCATGCCCGGCCTCGCCCGCCCCTGGAAGGCCCACCTGGTCTCCTCGGTGGCCATGTAGAACACGTCGTCGGGTGCGTCGATCCAGTTCATCCGCCGCCGCTTGACGGGGGGCAGGGAGCCGCCCCGGATCAGGCGCACTTTGGTGGGGTACGACTTCCCGTTGAGCAGGAGGTTCCGGCTTGGTCCCTGGGCGAGGAGGGGTGGTGAGAGG | - |
win_chr2_001825930 | chr2 | 233,718,912 | 233,719,167 | cds | Hipposideros armiger | Hipposideros_armiger | GCA_001890085.1 | 186,990 | Hipposideridae | mammals | 1 | zoonomia_cactus | JXIK01000018.1 | 2,523,781 | 2,524,036 | + | 8,428,090 | 2,523,789 | 2,524,027 | 1 | 238 | CCCCATGGACGGCAGCCACTGGCTCAGCATGCGCAAGGCCGTGCAGGAGCTCCATGCCAGAGGCCACCAAACAGTGGTCCTTTCGTCAGATGTGACCCTGCACGTCAAGGGGGAGGACTTTTTCACCCTGAAAACCTATGCCACTCCATATACTCAGGACGAATTCCAGTACATCATCCTGGGCCGGACTGAACAGATGTTTGAAAGAGCGCATTttctaaaaacttttttcaaCTCTATGGTAATTTTGAAAAA | + |
win_chr2_000676597 | chr2 | 86,604,288 | 86,604,543 | cds | Xiphophorus maculatus | xipMac1 | X_maculatus-4.4.2/xipMac1 | 8,083 | Poeciliidae | ray-finned_fish | 6 | ucsc_multiz100way | JH557398 | 77,210 | 77,465 | + | 89,597 | 77,213 | 77,462 | 8 | 242 | GTTTATCATCTTGATGTAAACAAGACACAGACTGGCATTGATGGAGAACAGTTTTAACCTTCCAGGTTGGAAGAGATTTTAAGTAGTCTACATTTACTAGTGGGTGAAGCCAGAGATCTGGGAAAGCCAAACGCTCAAATAAAAAGCTGGGGTCATCTTCCCACTCTGAAAGATCAGACGGGAACTGTTGCACTAATGTAATAGGGTGAAGCAGAAAGGAGGTGTACCAGTCCCACAGACTGGCTAGCCACTCGA | + |
win_chrX_000139076 | chrX | 17,801,600 | 17,801,855 | cds | Columba livia | colLiv1 | Cliv_1.0/colLiv1 | 8,932 | Columbidae | birds | 2 | ucsc_multiz100way | KB375696 | 1,024,436 | 1,024,691 | - | 1,183,535 | 1,024,434 | 1,024,692 | 6 | 255 | gggAGTTCAGGTGCTGGAAGACGTGCTGCTCCAGGAGGACAGGCAGCGGGACGGGGCCCTGGGTGGTCATGACGTAGGGGGTGGCGGCGTTGGTGGCCGGCATCTGCGGGGCGGCGCTGCCCGCGACCTGCAGGTGGATGGGCAGGACCACGGGGCTGTCCCCCAGGCAGATGGGCTGCAGCACGGTGGCCGCCACCTTCAGGGCCACCCCGCTCTGCGACTCAGCCGGCGGCGTCAGGATGGAGGGTGCGGGGA | + |
win_chr15_000572394 | chr15 | 73,266,304 | 73,266,559 | cds | Octodon degus | Octodon_degus | GCF_000260255.1 | 10,160 | Octodontidae | mammals | 1 | zoonomia_cactus | JH651541.1 | 4,233,749 | 4,234,004 | - | 19,343,008 | 4,233,753 | 4,233,999 | 12 | 238 | TTTTCCTTCCCTCAGATCCAAGCTCTCACTATGTGATCACCCTGAAAGCGTTTAACAATGTGGGTGAAGGCATCCCGCTGTATGAAAGTGCTGTGACCAGGCCGCACACAGGTAGGGGCTTTCTGTCTCTGGTGCTCATCAGCACTTTCCCAGTAGCTTACATATTGGCATCGATCCCGCTTTCCTGCTcatgaaagaaatgtatatgGTAGTATAAGGTGCAAGCTTAAAATGGGCCCGTAGGCTTTCAGCACG | + |
win_chr8_000111231 | chr8 | 14,237,440 | 14,237,695 | cds | Balaenoptera acutorostrata | Balaenoptera_acutorostrata | GCF_000493695.1 | 9,767 | Balaenopteridae | mammals | 1 | zoonomia_cactus | KI537508.1 | 18,775,426 | 18,775,681 | - | 23,207,421 | 18,775,488 | 18,775,619 | 1 | 131 | CAGTATAAatttatatatcaaattttgactatatttctattttttatttgatttctttattttatacatgtttcCCAGGATAGTCCACTGGTCTTACAGTCTGACAGGAATGTAACAGTGAATGCAAGAAATCACATGGGGCAGTTAACGGGACAGCTGACAGTAGGTGAGTGCTTTGGGGTAAAGATTGCTCATACCATCTTACTCCATTTAAAACTCTGTGGTTGTTTAAATTGGGAAACGCAAAAGTATATT | - |
win_chr3_000385202 | chr3 | 49,305,728 | 49,305,983 | cds | Papio anubis | Papio_anubis | GCA_000264685.2 | 9,555 | Cercopithecidae | mammals | 1 | zoonomia_cactus | CM001492.2 | 86,391,988 | 86,392,243 | - | 188,283,584 | 86,391,988 | 86,392,243 | 1 | 255 | GGGTTGTCCCTCAGTGACCCTTTAGAACTTGATTTATCTTGTATCTCTGGTACTGTCTAGAAGGTATGTAAAGCCCTCATCATGTTCTGTTTCAGTGCTTGAGCAACACTGCACCACTGACTGACTACTTTCTCAAAGATGAGTATGAAGCCGAAATCAACAGAGACAACCCTCTGGGGATGAAAGGGGAAATTGCAGAAGCCTATGCAGAGCTCATTAAGCAGATGTGGTCTGGAAGGGACGCCCATGTGGCAC | - |
win_chr12_000915541 | chr12 | 117,189,120 | 117,189,375 | cds | Galeopterus variegatus | Galeopterus_variegatus | GCA_004027255.1 | 482,537 | Cynocephalidae | mammals | 1 | zoonomia_cactus | GalVar_scaffold_5591 | 40,276 | 40,531 | - | 123,678 | 40,276 | 40,531 | 3 | 254 | AGCACTGAAAAGGGAGATATCAAAAAGAGCTGGATGAGCTAATGCCTACAAACCCAGCGCGTACACTACCAGGCCAAAGCTTAGAGCTACACCAACAGATCCTTACGTGCTCTGAAAAGAACCTCTTTGAGAACGAGGCTACAATCTTCCGGGCTTCTAACCCAGCTTTTTGCCGAACTTTATATTCTTCCAACCAATTGACGTAGTCGGTGGGGCTGTAGTGTTTCATAAGGGAAGGCCACCTACAAGGAGAGA | + |
win_chr4_000931732 | chr4 | 119,261,568 | 119,261,823 | cds | Spilogale gracilis | Spilogale_gracilis | GCA_004023965.1 | 30,551 | Mephitidae | mammals | 1 | zoonomia_cactus | SpiGra_flattened_line_20120 | 54,169 | 54,424 | + | 73,950 | 54,168 | 54,424 | 16 | 233 | TCTTGGTATGAAAAGCAAAGGCACAATAATGTCGGCTGGTGTAGCAGATCATACCAACTAGGTGAAGTTCACTATTTTTGGCATTTTCATCAGTAACTCTATAAAAAAGCTGTTTAAAAAAATAAAAATGTATATTTAATACAGTACCATTTTAAAAATGAGGAAAAATAATTTGGAGAGTCATGTATTTGACTATCTGTGAAAAAATTTCTTATGCAAGCTTCCCTAATCCAATATTATATTAGTACAGAAGGT | - |
win_chr4_000858095 | chr4 | 109,836,032 | 109,836,287 | cds | Monodon monoceros | Monodon_monoceros | GCA_004026685.1 | 40,151 | Monodontidae | mammals | 1 | zoonomia_cactus | MonMon_M_scaffold_49698 | 8,816 | 9,071 | - | 22,167 | 8,816 | 9,070 | 3 | 252 | CATCAGCATGATTCTGGGGGCCTGGTTCAATGGCCTCTTTTGGGCTTTGATGCCTATTGTTGGGTGGGCTAGTTATGCCCCAGATCCTACTGGGGCCACCTGTACCATAAACTGGCGGAAAAATGATGTGTAAGAGACATGTTTACACTTTATAATCAAATGCTTCTAGTGTAGACATTTTCTCACCATTTCAAATTTAAGGTCAGATCAAATGTTTCTCATGCAGAGATGACAAAGATCTTCCTTGGTATAGAT | + |
win_chr3_001024483 | chr3 | 131,133,696 | 131,133,951 | cds | Myocastor coypus | Myocastor_coypus | GCA_004027025.1 | 10,157 | Myocastoridae | mammals | 1 | zoonomia_cactus | MyoCoy_scaffold_16894 | 1,668 | 1,923 | - | 64,452 | 1,670 | 1,920 | 6 | 248 | ACTTTTGCTTCCCGTTAAAATGATATGATGCATTGCATACTGAAATAATCAGACATATATGCACCCATTAATTTTCAGTGCTGAATTTTTTGTTTAAAAAGTATTCATAAAGATTTGTTATTTTTTTCAAGGGGATTTTGGAGTTTCTTGCCTCCTGATGGGATCGTGTGACCTGGCCACAACTTTAACTGGAACTCCCCACTATATGAGTCCCGAGGCTCTTAAACACCAAGGCTATGACACAAAATCAGACAT | + |
win_chr7_000847676 | chr7 | 108,502,400 | 108,502,655 | cds | Tapirus indicus | Tapirus_indicus | GCA_004024905.1 | 9,802 | Tapiridae | mammals | 1 | zoonomia_cactus | TapInd_scaffold_1603 | 333,833 | 334,088 | - | 543,181 | 333,866 | 334,054 | 2 | 188 | AAAATTCCTAAGACTGAACTGGATCTATAGTTTTAAAAAATCATTTCTCTAGCCTTACCTTGTTCCTCCACCATCAATTGTGAGAATTCGGATTCCTCTTCCTTTCACAGGATCCACATAGCCAATTAAAGCCAAAATTTCCCTAACTGCAGCCTGAAGAGTTTCATCCTTAATTTGTCGCAATCGTAATAAATATGGAATAATTTTTTCCTAAGTGAGAGAAAAGATATTTTGTTGCTTTTGTCAAGAGTGAAA | + |
win_chr1_001153285 | chr1 | 147,620,352 | 147,620,607 | cds | Tragulus javanicus | Tragulus_javanicus | GCA_004024965.1 | 9,849 | Tragulidae | mammals | 1 | zoonomia_cactus | TraJav_scaffold_36178 | 19,934 | 20,189 | - | 33,622 | 19,934 | 20,189 | 1 | 255 | TACCTCAGAAGATGAGAGAGGCTGGGGCGGGGCCCGAGGAGATGCTCAAGCTCCGTGCAGGTGGCGCAGACATGCTGCCTGCTCAGCAGAAGATGGTGCCCCTGCCGTTCGGCGAACACCCGCAGCAAGAGTATGGCATGGGCCCCAGGCCGTTCCTCCCTATGTCTCAGGGTCCAGGCAGCAACAGTGGCTTGCGGAATCTCAGAGAACCCATTGGGCCCGACCAAAGGACTAACAGCCGGCTCAGTCATATGC | + |
win_chr5_001176159 | chr5 | 150,548,224 | 150,548,479 | cds | Takifugu rubripes | fr3 | FUGU5/fr3 | 31,033 | Tetraodontidae | ray-finned_fish | 6 | ucsc_multiz100way | chr14 | 4,332,062 | 4,332,317 | - | 12,328,026 | 4,332,092 | 4,332,286 | 18 | 190 | cttttctttgcttcctctcAACAGCACCAAAGAGCTCACGATGACCCCGTGGCACTGAAGTACTCCTTCCATGATGTCATCACCGCAGGCCACGATGCACCAGTAAAACTACGGGTCCTTCAGAATCGCTGTCTGGTGCCAGGCTGGTACGCCATCCATCTGGAGCGCTGGCTCAACTATTACCACTCCAGCCAGGTGCCCTATCCCTACACATGGGGAACACAGCATTCTCCCCACCATTCACATCTGCTTTAA | + |
win_chr1_000659489 | chr1 | 84,414,464 | 84,414,719 | cds | Macroglossus sobrinus | Macroglossus_sobrinus | GCA_004027375.1 | 326,083 | Pteropodidae | mammals | 1 | zoonomia_cactus | MacSob_scaffold_395 | 1,081,576 | 1,081,831 | + | 1,086,240 | 1,081,576 | 1,081,831 | 1 | 255 | TTTGTGAAATACACCATTTGGCATGATCCTGATAAGAACTGAAATAAGAATGTCCAGATATTTTAATTGCTTTGACATTGTAGACATGGTAAGGAAGGGAGCAGTTTGAAGGAAGCTCTTGTGTCTTTCTCTGCCAGGTTTCTGCTAGCAAGTGTGTCTTCAATCGTTGAGCCATCCAGGCTGCAAAAATGTCTAGAGTTTATAAGGAGAAAAATAATAGGGTTAGTATTTATACTTAGATAAGTCTCTGAAAAT | - |
win_chr1_001219077 | chr1 | 156,041,728 | 156,041,983 | cds | Trichechus manatus | Trichechus_manatus | GCF_000243295.1 | 9,778 | Trichechidae | mammals | 1 | zoonomia_cactus | JH594819.1 | 1,134,701 | 1,134,956 | - | 4,028,341 | 1,134,694 | 1,134,963 | 8 | 249 | CAGCAGGCAAAGCAgttggaggaaagagaaaaagagacccTCAGAGGCACAAAGGCTGCCGGGAGACAGCAGGGCTCAGAGAGGGGCAGACGGGGGAGCCGGAGGGGAGGAGTGGTCAGAAGCCAGTGGCTTATCTGCCCCCAGCCTTACCTGGGTACCAGCCCGGGGGCCTCGGTCTGCAAGGTCTGCAGCCCCTGCTGGATCTGCAGCAGCGCCTGCATGGCGCGGGGGTTGGTCAGGATGGAGAGTGACTCT | + |
win_chr3_001440014 | chr3 | 184,321,664 | 184,321,919 | cds | Enhydra lutris | Enhydra_lutris | GCF_002288905.1 | 34,882 | Mustelidae | mammals | 1 | zoonomia_cactus | KZ291749.1 | 7,375,504 | 7,375,759 | - | 99,434,291 | 7,375,501 | 7,375,762 | 2 | 255 | CATAGCCGGATTGGCAGAGAGGATGGTGGGGGAAGCCACTGATGCGGGAACCTCCTTGTCCTGCTCCTCCGGCTCACTGACTGGGCTTAAGTCCACAGCTGGTGGCGAGGGGGCTCCGTTGAGCAGTTCCTCAGGTTGGGCAGTTGGAGCAATGGGCACGGGGGATTCAGAGGGACAagcttggggagggagaggagcaagcTCTGGGCTCGACTCCACCTCTGGTTCCAGATCCTCAGACGGGACCATGCCATT | - |
win_chr5_000009800 | chr5 | 1,254,272 | 1,254,527 | cds | Ctenodactylus gundi | Ctenodactylus_gundi | GCA_004027205.1 | 10,166 | Ctenodactylidae | mammals | 1 | zoonomia_cactus | CteGun_scaffold_11079 | 21,932 | 22,187 | + | 93,182 | 21,936 | 22,183 | 8 | 183 | GGTCCTCAGCCTCCGTGTGCTCCCCCAGGCGTGGCGCTCGGAGCCAAGGGTGCTTCTGGACTGCTTCCCGCGGAAGCCATCCAGTGGCTCTGCCACCAAGCCTTCCTGCTCAAGCTAGCTCGTCACCGGGTCACCTACAGCCGTCTCCTGGGCCTGCTCAAGACGGGTAAGCACACAGGCAGAGATGTGCCCTCAAACACCGAGTACTGGGCCAAGGGCAGCGCTAGACCACAGGCCCTTGGCTCCTTTCTCACG | - |
win_chr8_000217007 | chr8 | 27,776,768 | 27,777,023 | cds | Otolemur garnettii | Otolemur_garnettii | GCF_000181295.1 | 30,611 | Galagidae | mammals | 1 | zoonomia_cactus | GL873593.1 | 2,924,058 | 2,924,313 | - | 9,898,869 | 2,924,058 | 2,924,313 | 3 | 252 | CTGATTTATTCTTTTGGGTGAGTCCCAGTGACTCATTTTCCAGAGAACATTTTTTAACAGAGGATTTTTTTCTACTAACAAAAAATGCTGCTCCACCCTGGAGTGTaacctgtggttttgttttttggcttagAACTCGAGGAACATTAGgattatttttaactgaataaCAATTATTCTCTTTCTCCATAATTGGCTTATAGGTCACTCGATTTTGGTGAGAACTTTTAGAAGTCCTTGATACAGGCTTGACAT | - |
win_chr1_001214186 | chr1 | 155,415,680 | 155,415,935 | cds | Heterohyrax brucei | Heterohyrax_brucei | GCA_004026845.1 | 77,598 | Procaviidae | mammals | 1 | zoonomia_cactus | HetBruBak_scaffold_3396 | 92,237 | 92,492 | + | 196,910 | 92,230 | 92,498 | 5 | 254 | TTCTAGCTTTACTGAAGCAGCAGTTGAGACTCCCAGTCCTCCCGAAACCCCAGACAAACCTACTGAACCTGAAAATACTTTGCAGCCTGTACTCACTCTCATTCCAAGGGAAAAGAAGACCCCTCGTCCCCCAAAGAAGAAGTATCAGAAAGCAGGGCTGTATTCTGACGTTTATAAAACTACAGAGTAAGTAGTAGCATATATTAGCTGACATTCTTTTAAAGACATGTTATTCTTCCATGGTTGGAAAAAAAC | - |
win_chr8_000854946 | chr8 | 109,432,960 | 109,433,215 | cds | Equus caballus | Equus_caballus | GCF_000002305.2 | 9,796 | Equidae | mammals | 1 | zoonomia_cactus | CM000385.2 | 53,841,062 | 53,841,317 | + | 83,561,422 | 53,841,062 | 53,841,316 | 11 | 241 | gtcttttttcccctacttGCTTGTAGGCTCATTGTTTATATCCTTCATAAGATAAGCCtatttttctctgagaaatatctgattttGTAACAACAGCTtctatgtttttctcattttaatattgttatttaaacatattttcaggGTCCTATGAAGAGAGCACTGTTCTAACCATATCGGGCTCTGGATTTTCTCCCAGTTCAGCTGTGTCAGTCTCAGTTGGACCAGTAGGttgctctcttctttctgtgGATG | + |
win_chr2_000756474 | chr2 | 96,828,544 | 96,828,799 | cds | Paradoxurus hermaphroditus | Paradoxurus_hermaphroditus | GCA_004024585.1 | 71,117 | Viverridae | mammals | 1 | zoonomia_cactus | ParHer_flattened_line_15628 | 38,240 | 38,495 | + | 77,817 | 38,221 | 38,514 | 8 | 250 | AATTCTCAGGTTGACTCAACTAGGATCTACTCTTCACACAAATTTGTGACCAGCATGTTCAGCCCCTTGGGGACACAAAGCTGGTTAAAAGCCGGTACCGATGAGCAGCCCAGTCACCTTAATGAACTGTAGGTCGGAGAGGGCCCGCACGGTGTAGTCAGGACAGTATGCAGACAAGCGGCCACCATCGGCTGGCTCAGGCTGCAGGTCATGGCGGATGGACTGGAGCGAGGACACTGGGGACTGGTGAACTAT | - |
win_chr17_000610742 | chr17 | 78,174,848 | 78,175,103 | cds | Moschus moschiferus | Moschus_moschiferus | GCA_004024705.1 | 68,415 | Moschidae | mammals | 1 | zoonomia_cactus | MosMos_scaffold_2138 | 10,422 | 10,677 | - | 163,902 | 10,421 | 10,678 | 20 | 212 | TGGAGTGCTTCCGAGAGGCCGCCTACACCAAGAGGCTGGGCGTGGAGAAGGAGGTAGCCGCCCCCTGCCTTCTCCCAGGGGCGAGGGGTGGGGCGCTGCGGCCCGCCCTCTCGCTCAGCCCGGGTGCTTCCTGTCTCACGGTCAGGTCGAGGTCATCGGAGGAGCAGACAAGTACCACTCCGTGTGCCGCCTGTGCTACTTCAAGAAGACCTCCGGTCAGCCCGCCGTGCTGGACAGTGAAGAGAATAAGGAGAA | - |
win_chr16_000453479 | chr16 | 58,045,184 | 58,045,439 | cds | Cavia porcellus | Cavia_porcellus | GCF_000151735.1 | 10,141 | Caviidae | mammals | 1 | zoonomia_cactus | DS562877.1 | 24,140,332 | 24,140,587 | - | 33,695,408 | 24,140,330 | 24,140,589 | 6 | 235 | CTCCTGCAGGGAGCGCTTACAGTAGAGCAGCATGCGGGGTGCACCCTTGCGCTGCATCTGCACCAGAGCATAGGCAACGCCCAGGacacagagcagcagcagcaggggcaccagcaccatcaccacgttcactgtccgcaccacctcctccatctgcaccaccacTCGGctgcccccatccctgtccttgtctccgtctgcccctgtcccATCGTCCATATCGCCCTCTGTGCTGTCACCATCCAGCCCAGGCTC | - |
win_chr14_000188974 | chr14 | 24,188,544 | 24,188,799 | cds | Mormoops blainvillei | Mormoops_blainvillei | GCA_004026545.1 | 118,852 | Mormoopidae | mammals | 1 | zoonomia_cactus | MorMeg_scaffold_4682 | 200,720 | 200,975 | + | 207,816 | 200,720 | 200,974 | 2 | 254 | CGCGGCTGCTGCCATGGATCCCGCCGGCCTGGAGCTGATTCTGCGGGAGTTGCTGCTGCCGGACACCGAGCGCATCCGCCGGGTACGGGGCAGGCGGGACCGGACCGGGGCGAGCGGGAGGTTGCGGGAAAGACCTGACTCTAACCCCCAGCATCCCCCAGGCCACCGAGCAGCTCCAGATTGTTCTTCGGGACCCTGCCGCGCTGTCCGCGCTCTGCGACCTGCTGGCCTCGGCGGCCGATCCTCAGGTGAAGC | - |
win_chr6_000304611 | chr6 | 38,990,080 | 38,990,335 | cds | Pithecia pithecia | Pithecia_pithecia | GCA_004026645.1 | 43,777 | Pitheciidae | mammals | 1 | zoonomia_cactus | tarseq_6 | 6,251,669 | 6,251,924 | + | 52,183,408 | 6,251,673 | 6,251,920 | 2 | 247 | CGAGATATGACAAAGTTGTAATTGGGAGACAGGAAGCGACACTATTTTTCACAGTAAAGTAAAAAAAGGAGAGAGATTAGGAGTGAAAATGAAATGCACTGTCTTTGTCAGACTGAGTTACAAATGACCCCTTCAAATTAAAAAATGCCAGTGACTTACGTGATATCAGCATTAGGGTGAAGCCCAAAGACTTCAGGGTTATCTAGGGAAGGCAGTGACTGGATGTATTCAAAATACTGGTCCAAGGTTTTGCAC | - |
win_chr15_000324752 | chr15 | 41,568,128 | 41,568,383 | cds | Ara macao | araMac1 | SMACv1.1/araMac1 | 176,014 | Psittacidae | birds | 2 | ucsc_multiz100way | KE025418 | 17,212 | 17,467 | - | 37,535 | 17,260 | 17,418 | 2 | 158 | ACATTCTCCAACTCTGAGCCCAGTGGTTCAGCTCTCCTCTCGATCTGTTACCTGAGTTACGTTATCCTGAATCCACTCCAGCCTGTATCCCAGGACATTTTCTTTGAGCACATCTGGAGCCACACCTTCCCACTCCAGAATCAGACCAGGATCTGTTTGAATAACATGGATATTTTGTGGGGTGCTGCTTGGCGCTGAAAGCAGAGGACAGAACACAATCACTATCCACACTGAAAATGGCTGCAAAGACAGTTT | - |
win_chr22_000249266 | chr22 | 31,905,920 | 31,906,175 | cds | Aotus nancymaae | Aotus_nancymaae | GCA_000952055.2 | 37,293 | Aotidae | mammals | 1 | zoonomia_cactus | KZ204305.1 | 1,652,012 | 1,652,267 | + | 1,718,789 | 1,652,013 | 1,652,266 | 3 | 252 | CAGCCACCAGGAGGGCACCTGGAGCCTGCTGAGGTGGTTCTGCAGCCACAGGTTCAGTGCAAGGAAAGGGATCTAGACCCACCTGCCCACTCTTTACCCATAGCTCCTCACCTGTAACGTGGATGTACTGAGGCTTGTTCTCAGCAGGGAAGTTAAAAGCAGAAGCAGAATATTTATCTTGTACAAACCCAAACCTAGGAAAGGACAGGACATCCTGATCAGCACCTCCTTaggaaaagggagaaggggagagaa | - |
win_chr19_000110360 | chr19 | 14,125,952 | 14,126,207 | cds | Eubalaena japonica | Eubalaena_japonica | GCA_004363455.1 | 302,098 | Balaenidae | mammals | 1 | zoonomia_cactus | EubJap_flattened_line_4892 | 87,828 | 88,083 | - | 110,062 | 87,868 | 88,042 | 4 | 174 | GaggtcagacagtgcttgagagcagagccaggatttgaaccTGAACTTTGACCAATGAACCATTCTGTGTGCTtttgggtagaagaggatgtttctaggtgtcaaggcctaaggcctagtctttcttacctgaaagacgaacatgtgtctCCCTGCTGGGACAGGGCCGACCAGCACTGAGTCTAGGATTTGATCAAACTCTTCACTCTCAGCTGAGCCTACGTAAATGATCTTCCACTCCAGGTCTGCAAGGAT | + |
win_chr6_001143649 | chr6 | 146,386,944 | 146,387,199 | cds | Manis javanica | Manis_javanica | GCF_001685135.1 | 9,974 | Manidae | mammals | 1 | zoonomia_cactus | JSZB01008779.1 | 64,267 | 64,522 | + | 158,172 | 64,270 | 64,519 | 14 | 236 | AGAATGAGTATGTGCAAGATGAATTCACCTGCAAAGCTTGTGACTTGGGGTGGTGGCCCAATGCAGACCTAACAGGTAGGAGCTCCTCCCTTGTGAACCTTGTCCCTGACTACTGGCCTCTCCAATGTGCCTGTTGTTTACAATGCGAGCAATTAGCTCATGCCTTTTTCAGGTTTACAGGGTGCACTTTTTAATGCTCATGTCAGAGTTCACATAAACCTATAGTTTTCCATGATCTATACtgaaaggaaagtt | + |
win_chr13_000304798 | chr13 | 39,014,016 | 39,014,271 | cds | Ailurus fulgens | Ailurus_fulgens | GCA_002007465.1 | 9,649 | Ailuridae | mammals | 1 | zoonomia_cactus | LNAC01000143.1 | 262,395 | 262,650 | + | 3,665,815 | 262,396 | 262,648 | 2 | 252 | AGAGGTGGCAGAAAACGGGAGGCCAGGGAAAGGGCCAGAAGTCGAAGCAAATGTTTCACTGGAAGCAGGAGCAGCCCGAGGTGTGGATGCAGCCTGAGGGGCGGGGGTCGGAGGAGCGGAAGGACCTGGCAGGGGCACCAGACCAGCGAAAACGGACGGGACTGGAGCTGATGTTGTACTGTGGCCAGAAGTAACAGGCGCCGCAGGCAAGGAAGGGGTTCTGATGACCGTTGGATTTGGTGTTGACGGCTGAGG | + |
win_chrX_000802735 | chrX | 102,749,952 | 102,750,207 | cds | Choloepus hoffmanni | Choloepus_hoffmanni | GCA_000164785.2 | 9,358 | Megalonychidae | mammals | 1 | zoonomia_cactus | KN186972.1 | 6,256 | 6,511 | - | 8,325 | 6,256 | 6,511 | 1 | 255 | ATGGATTCTGTGGAATTTGAAAAACTTGTTAGCTTACTCAAGTCAACTACTGATCCTCTCATTCATAAAATAGCTCAAATTGCAATGGGTATCAATACTGTTCATCCATTTGCCCAAGAGTTCATTAATGAGGTGGGTGTAGTGACACTTATTGAAAGCTTGCTCAGTTTGCCTTCCCCTGACATGAGAAAAAAGGCTGTAATAACTCTGAATTCCCCTTCAGAGGATGAAAGACAACACAAGGTTGAATTACAC | + |
win_chr9_000151147 | chr9 | 19,346,688 | 19,346,943 | cds | Dipodomys ordii | Dipodomys_ordii | GCF_000151885.1 | 10,020 | Heteromyidae | mammals | 1 | zoonomia_cactus | KN672399.1 | 5,173,886 | 5,174,141 | + | 12,951,316 | 5,173,892 | 5,174,135 | 2 | 243 | GTGGAGAGGGAAACACTGGTATTGCAGTTAGTCATCCTTTAGAAAGGAGATCAAGTCTACCTTTTGATCATGGTCCACCAGCACAGGAAAATCCAGAAAGTGAAATGAGCTCCTCGGTCGTGTCTGGGTCAAAAACTTTTACTGGGCGTCTTAAGCCACAAACTCCATATCGAACTCATAAGGATCGTTCAACATCTTTATCAGCATTGGTACGGTCTTCACCACATAGCCCACTGGGCTCTGTAGTAAATTCAT | + |
win_chr7_000375839 | chr7 | 48,107,264 | 48,107,519 | cds | Petromyzon marinus | petMar2 | WUGSC_7.0/petMar2 | 7,757 | Petromyzontidae | jawless_vertebrates | 7 | ucsc_multiz100way | GL477625 | 134,092 | 134,347 | + | 973,922 | 134,062 | 134,377 | 26 | 235 | TTTACAGAGGCCGTTGGGCCAACGAAACTTGCAGCAGCATTTCTCTACTGTTGCGTCGATCATTACATTCCACACCGTTCTAGTGCCTCTGTTCGTGTGTGCGTGAAAGCTAAATTGGCGGACTCTTCGTGTGCAGGCCAGGCCCGGTTGGACGGTGCCGTGTGCACGTACAGCCACGAGGAGAAGCTGGTGTATCTGCGCGCGGCGCACGAAGCGGGGGTGTGCAACATCGAGATGGAGTCGTCCGTGTTTTCC | + |
win_chr2_000763577 | chr2 | 97,737,728 | 97,737,983 | cds | Microcebus murinus | Microcebus_murinus | GCA_000165445.3 | 30,608 | Cheirogaleidae | mammals | 1 | zoonomia_cactus | CM007664.1 | 36,443,338 | 36,443,593 | + | 73,916,538 | 36,443,343 | 36,443,588 | 7 | 245 | AGCCCTACCCTGGTAGcgtctcccctccccaggcccgcTCAGCGGGGAAGTGGCCGCTGAAGTGGTACGCGCCTGAGTGCATCAACTTCCGCAAGTTCTCCAGCCGCAGTGACGTCTGGAGCTACGGGGTCACCATGTGGGAGGCCTTGTCCTATGGCCAGAAGCCCTACAAGGCAGGTGGCAGAGACAGGCAGGTGGCGGGCGGGGCAAGGTGGGAGGGAGccctggtggctcacacgtgCCTCATCCTCATCT | + |
win_chr2_001319725 | chr2 | 168,924,672 | 168,924,927 | cds | Mungos mungo | Mungos_mungo | GCA_004023785.1 | 210,652 | Herpestidae | mammals | 1 | zoonomia_cactus | MunMun_flattened_line_10721 | 27,245 | 27,500 | - | 136,428 | 27,251 | 27,493 | 6 | 238 | TCCCAATTTTAAAAAACAAAAATTGTTTAAATACACAGAGAGGTCATTAACATGCACTCAATACAGCATAGGAGCAATGACTGTTTCTGCGTCTCTAACTTACCATACTTTTTCCAGAAATATGAAACTAATGTTGGGTCCCAGGGGTCTCAACTATCTCGAGGGGAGAAACAGCGCATTGCTATTGCTCGGGCCATTGTACGAGACCCTAAAATCTTGCTACTAGATGAGGCTACTTCTGCCTTAGACACAGAA | - |
win_chr2_000120434 | chr2 | 15,415,424 | 15,415,679 | cds | Erinaceus europaeus | Erinaceus_europaeus | GCF_000296755.1 | 9,365 | Erinaceidae | mammals | 1 | zoonomia_cactus | JH835403.1 | 3,873,019 | 3,873,274 | + | 4,841,617 | 3,872,989 | 3,873,304 | 6 | 194 | AGGAAAGCGGGAGCAGGGGCTTTCCGGGCCTGGAACACATGACAGGCctagtttgggggtggggtgtttgCAGACACCAGTCTGGGTGCAGCGAAAATTTGTacccatgagagagagagagagagagagagagagagattgatctaCTCACATCTGGTTTGGAATGCTGGAATATCTTCAGTGGCAACTTCAAGTCCCCTTTAGCTAACGTTACCAAATATTCCTTGAGTAGCTGACTCGCCGCGCCAGGAGACT | + |
win_chr8_000935870 | chr8 | 119,791,232 | 119,791,487 | cds | Equus caballus | Equus_caballus | GCF_000002305.2 | 9,796 | Equidae | mammals | 1 | zoonomia_cactus | CM000385.2 | 62,784,108 | 62,784,363 | + | 83,561,422 | 62,784,105 | 62,784,366 | 7 | 247 | aattaaatttgtattttttttagcCCAGCATCCCATCTACACTTTTCAATAAAGCATCCACATACACTCTCCTGGGAATACTACACTATGTTTCAGTGTAAAGCTCACCTTGTGATGAGATTGATTGAAAATAGAATCAGTATGGAATTTATGCTACAAGTAAGTATTGAAGTTAAGAACTTAACAATAACTGTAAAAAATGATCTGTTCTATATGTGTATAATCTGAATCCTGTTCTGtagaataggagttaga | - |
win_chr11_000049938 | chr11 | 6,391,936 | 6,392,191 | cds | Ctenodactylus gundi | Ctenodactylus_gundi | GCA_004027205.1 | 10,166 | Ctenodactylidae | mammals | 1 | zoonomia_cactus | CteGun_scaffold_5976 | 1,135 | 1,390 | + | 233,441 | 1,137 | 1,387 | 3 | 250 | TCGTAAGGACCAACTGCGAGCCCTGACCACCATCACAGACCTTGTGAGGAAGTTCTTAGGGCCGGTGCCTGTGTACCCTGCTGTGGGCAACCACGAAAGCACACCCGTCAATGGCTTCCCACCCCCCTTCATAAAGGGCAACCAATCCTCGCTCTGGCTCTATGAGGTGATGGCCAAGGCATGGGAGCCCTGGCTGACTGCGGAAGCCCTCAAAACCCTCAGGTAAAGTCCCTGGAAACTCTGGGAGGAACACAA | + |
win_chr22_000327982 | chr22 | 41,981,568 | 41,981,823 | cds | Anolis carolinensis | anoCar2 | AnoCar2.0/anoCar2 | 28,377 | Dactyloidae | reptiles | 3 | ucsc_multiz100way | chr5 | 27,025,223 | 27,025,478 | + | 150,641,573 | 27,025,254 | 27,025,447 | 12 | 186 | AGATTCAAGCCTTCCTACCTACAACCATAATGTTGAAGTCAAATCCAGTTTTCATGGTCTTCTTGCGCATTTGCTCTATGATGGTGTCGATTCCAATGTAGCCTAGCAGGTTAGAATTAATGCCAACAGGTTTCATTGGCACCACTGGCTTTGGCCTGGGCTCTGGCACCACTTCAGACATGGCTGCTTCAGGCTTGGTTTCTGCTGAGCCTGTAAGCAGAAGGAAAATAAGTGGTTAATGTCATACAAAGACAT | - |
win_chr1_001185205 | chr1 | 151,706,112 | 151,706,367 | cds | Hipposideros armiger | Hipposideros_armiger | GCA_001890085.1 | 186,990 | Hipposideridae | mammals | 1 | zoonomia_cactus | JXIK01000820.1 | 277,669 | 277,924 | + | 844,568 | 277,683 | 277,910 | 12 | 211 | AGCCACCTCAGCCCCACTCACTGTCTTCCCCACCCATGGGGCTAGAACTGGGCCTGGAGTGGCTGAGAGCGTGTCCCTGAGCCACGACAAGGGCCCCCCTGTCCCTAAAGGGTCGCACCTTCccgctgttgctgctgctgttgctgctggggaggcggcgggggctgctgAGCCACCAGGGTGGGGGGCTGCGGGAACGCAGGCGCAACCAGGCTGTAGGCTGCCGGGTAGGCTGCTGGGGTGGGAAAGCAGAGA | + |
win_chr13_000568545 | chr13 | 72,773,632 | 72,773,887 | cds | Danio rerio | danRer10 | Zv10/danRer10 | 7,955 | Danionidae | ray-finned_fish | 6 | ucsc_multiz100way | chr1 | 29,948,977 | 29,949,232 | + | 58,871,917 | 29,948,999 | 29,949,209 | 10 | 178 | TTGCAAAAAAAAGGATGTCAAAAATAATCAACACTTACGTTTGGGTATCTTGAGTTTTTAGGCCATCCATCTATAGCAACCATAATCCTCTGTCCAATCAGTGTGGCAGCTTGTCTGGTTTCAATGCGGATTCGTGGGATTCTCCGGTCTGCTGGAGTGAAAAGGTGTCTTGTTGCCTGGTGTTTAAATTCAAAATAATACAAAAAATAAAGTAAATGCACCAGAAAGGAATATAATATTTTATACATTTTTGGT | + |
win_chr8_000298016 | chr8 | 38,145,920 | 38,146,175 | cds | Elephantulus edwardii | Elephantulus_edwardii | GCA_004027355.1 | 28,737 | Macroscelididae | mammals | 1 | zoonomia_cactus | JH947408.1 | 3,123,166 | 3,123,421 | - | 3,484,820 | 3,123,168 | 3,123,419 | 4 | 250 | CTTATTTGGGAAAGAGATCGCTGAAGCTACTAGCATTACCTAATGACTCCTTTCTGCTCAGGCATCTCCCCAAAGTGTGTGGCCATGCCAGCCAACACACAGTTGGAGCCTCGGCGCTTGGCACAGCGCACACTCACAAAGTCGCGGGGCCCCACGAGGTTTCCTGCAGATTCCGCAGCCAGTTCATGAGTGATGACTGTGTCTTTTCCAATCTTCTGAAGAACCTGGAAAGCCATGAGAGGACCAGAGTCATTA | + |
win_chr17_000279523 | chr17 | 35,778,816 | 35,779,071 | cds | Orycteropus afer | Orycteropus_afer | GCA_004365145.1 | 9,818 | Orycteropodidae | mammals | 1 | zoonomia_cactus | OryAfe_flattened_line_222280 | 1,885 | 2,140 | + | 9,991 | 1,782 | 2,242 | 3 | 254 | GCAGCCTGGGCCGAGAGGGTCAGTGCCCAGTTTGCTGGACGCCGGGCCAAAATGAGGCGAAGGAAACGCTTTGCAAAGCAAGGTGAGTGATGTTAAAATCCAGCCAGGCTGCAATTCCCAATGTCCTGAAGtcccataggagggagccctggtagcatagtgcctaaagcatttgactgctaaccagaaggctggcagttcaaacccatcagccactcctcagaaggaagactgggcaatctacttccgtagaga | - |
win_chr5_001314280 | chr5 | 168,227,712 | 168,227,967 | cds | Pseudopodoces humilis | pseHum1 | PseHum1.0/pseHum1 | 181,119 | Paridae | birds | 2 | ucsc_multiz100way | KB221205 | 1,879,081 | 1,879,336 | - | 15,707,096 | 1,879,091 | 1,879,325 | 22 | 230 | TTACATGAATCAGTAACATCTGTAATTTCCACCATAGTACCACGTAAATGGTAATTGCAGGCTGACTTCATTTAACATCAACAGGAGTGCAATAAAAAACCAATCAAATTAAGCTATATGTTTTCTTTATGACTGGAGtagctaaattattttcttttcattattgctGTAGATCAAGTGAGGAACAGCTACCAGCTCTGTAATAATGGTACTTTGAGAGTGATGTATGCCAATGGCATGAGCATTAGCTTTCAC | + |
win_chr11_000875611 | chr11 | 112,078,080 | 112,078,335 | cds | Phocoena phocoena | Phocoena_phocoena | GCA_004363495.1 | 9,742 | Phocoenidae | mammals | 1 | zoonomia_cactus | PhoPho_flattened_line_7635 | 70,305 | 70,560 | - | 163,707 | 70,333 | 70,531 | 4 | 186 | TAATCCAGTAATTAGTGCAGACCGTATTTTCAGTTACTTTTTGGTGATGTAATGTGTTATTTTTAGTAACTTATTTTTATTTCTTTCCTTAAAAAAAAAAATCCAGATTCAGGAGGAATCAGATATGTGGAAAATAAGAGAACTGGAGAAACAGATGGAAGATGCGTACCGGGGGGCGAAAAGGAAAATGTTACCCAGCAGTTCAAGGTGAAGTTGCGACTCTGAGAACCAAAATAATTCTCATCTTATTCAGAA | + |
win_chr4_000379293 | chr4 | 48,549,376 | 48,549,631 | cds | Eschrichtius robustus | Eschrichtius_robustus | GCA_004363415.1 | 9,764 | Eschrichtiidae | mammals | 1 | zoonomia_cactus | EscRob_flattened_line_1830 | 231,733 | 231,988 | + | 255,561 | 231,733 | 231,988 | 1 | 255 | CTTGATAGGTGACTCAATGCCACTTTATTCTAATTGGCGACTGAAAGTGATGGAGCATAATGAAGGAGAGCCACTACCCTTCCCACCAGCTGGAGGCTGCTGGTCACCACTGGTGGATTACTTGCCTGAAACGTCATCACCTGGATTACCTCTTCACAGGTGGACCACAGTGTCATTCCTATTTCATATGAGCCAAACCACTGCTTAACACTTCCAGCTTCCTTTACGCTGTCTGACAACACACAACATAAGCAA | - |
win_chr4_000693214 | chr4 | 88,731,264 | 88,731,519 | cds | Mungos mungo | Mungos_mungo | GCA_004023785.1 | 210,652 | Herpestidae | mammals | 1 | zoonomia_cactus | MunMun_flattened_line_7879 | 124,213 | 124,468 | + | 185,643 | 124,216 | 124,465 | 11 | 230 | CGCTTCTCTACAGCACTGTTGAATTGCTCATTCGTTATATTCATAACAATTCCGATTTAACCCAGTTTTCTTGAAATTTCCTGCCTCTCTTAGTCCGGAACTCTTGGAGCAACTTCAGGAAATGAGAGACCAAAAGAAAAGGATTCGAAAGAAACTTCGTGATTTTGAAGACAGTTTTTTCAGACAAAATGGAAGGTAGTGCATGCTTCCTTTCCCCCTCGCTCCTCCGCCGCCACACACCCACGGCCCCCTTCT | - |
win_chr20_000272989 | chr20 | 34,942,464 | 34,942,719 | cds | Pithecia pithecia | Pithecia_pithecia | GCA_004026645.1 | 43,777 | Pitheciidae | mammals | 1 | zoonomia_cactus | tarseq_4 | 20,937,651 | 20,937,906 | + | 36,019,041 | 20,937,651 | 20,937,906 | 1 | 255 | TACGTAGAGTTCATGGTACCTATCTGCTCTGTGGCTAGGTCCTCAGAGACAGCCCCTGGGCAGATATTGTCAGCCTTCAGTTTTCCCCACAGACTGTGTTCCTGGGCCTGAACCGCTCAGACTACATGTTCCAGCGCAGCGCAGATGGCTCCCCAGTCTTGAAACAGATTGAAATCAACACCATCTCTGCCAGCTTTGGGGGCCTGGCCTCCCGGACCCCAGCTGTGCACCGGTGGGTCCCTTGGGCAGCCCCAG | - |
win_chr15_000326925 | chr15 | 41,846,272 | 41,846,527 | cds | Ctenomys sociabilis | Ctenomys_sociabilis | GCA_004027165.1 | 43,321 | Ctenomyidae | mammals | 1 | zoonomia_cactus | CteSoc_scaffold_2816 | 26,364 | 26,619 | - | 147,874 | 26,391 | 26,592 | 11 | 172 | CTGTGACACCCCACATGCTGCAGCACCCACACAAGCAGAGAGCAAAGTGCTCAAAGAGCACAGTGCTCTGAAAGGGAGGAATACTGCAGGGCTGGGCCTGAGGCAGAGAAACCGATACCTTTCCAGGTGGAGAAGTGGGGATGGTAAAAATAGTCTTTGTGGAAATGGAGGCCATGTAGAAAATTGTGGGTGGCCTGGGCCAGCGGGCGCCTTGTGAGAAGGTCAGTGAAGAACTCAGCGATACGGCCAGCTGCT | - |
win_chr1_000026661 | chr1 | 3,412,480 | 3,412,735 | cds | Balaenoptera acutorostrata | Balaenoptera_acutorostrata | GCF_000493695.1 | 9,767 | Balaenopteridae | mammals | 1 | zoonomia_cactus | KI537195.1 | 4,592,505 | 4,592,760 | - | 6,578,050 | 4,592,507 | 4,592,758 | 3 | 249 | AGCTGCGCCGGGCATGCCTTGGGCGGCCCCTCGCCGGCCCCCAGCCTGCGCTCGCCGTACACGTGGTTCTTGCGGGGCTCCCGGGTCGCTCCGTTCTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGGACGCCGGGGCCGGGGGCGCCTTGGGCGCCGGCAGGACGGGCTTGGCCTCTTTGGGTTTGGTGGTGAGGTCGAAGGGTGACTCGGCGCTGGGGCCACCGGCCTTGAGGG | - |
win_chr6_000870121 | chr6 | 111,375,360 | 111,375,615 | cds | Ctenodactylus gundi | Ctenodactylus_gundi | GCA_004027205.1 | 10,166 | Ctenodactylidae | mammals | 1 | zoonomia_cactus | CteGun_scaffold_7060 | 70,614 | 70,869 | + | 194,886 | 70,614 | 70,869 | 1 | 255 | GTCTATTTTTCCCAGCTTCACAAGCATATTTTTCCTCCCTCTAAACCTATTAATAATAATATACTTTATGATAACAGGGGGCAGCTTTTTAGACATTTTTCTTCGTTTTCGAGATCTGAGAGTTCCATCTAAACTTTCACCAACTTCCACAGGATGAGGTAGGCTAATTTTTGAGTTGTGTGTTACAAAACTTGACTCGCTGTCTTCAGTTTCATAATTGACCTTGCGTTTGGCTCTAAGTGTGTACTTATTTCC | + |
win_chr10_000750394 | chr10 | 96,050,304 | 96,050,559 | cds | Ailurus fulgens | Ailurus_fulgens | GCA_002007465.1 | 9,649 | Ailuridae | mammals | 1 | zoonomia_cactus | LNAC01000020.1 | 5,688,254 | 5,688,509 | + | 8,206,688 | 5,688,255 | 5,688,508 | 5 | 129 | AGAAGGTATTTTGCTGACCTGATTGCCATTGTGAGCAATcgcttcaccctctgcccttctgcccgACATCTTGCTGTCTATTTGCTGGACTTATTTATGGATCGATATGACATCTCCATCCAGCAGCTGCATTTAGTTGCACTTTCCTGTCTGCTTTTAGCAAGTAAGTATGAATCTCATCTATATGACTggaaatttccattgtttataataaagaaaatttatgtaGAGCTCAATGAAGTATCACCAAATTCC | + |
win_chr14_000190745 | chr14 | 24,415,232 | 24,415,487 | cds | Cricetomys gambianus | Cricetomys_gambianus | GCA_004027575.1 | 10,085 | Nesomyidae | mammals | 1 | zoonomia_cactus | CriGam_scaffold_10697 | 70,738 | 70,993 | + | 109,903 | 70,738 | 70,993 | 1 | 255 | TTCCCATGTCTCATTGTCCACAGTGGTCCGGGAGGCATAGGCAAGGCCTAGAACCACTGGACTGTCTCCGATGCAGCGGGAAAAATGCTTAAGGGCCCAAGCCACGGCGTAGGGGCTGTCCCCCCCAGACTGAGGACCCTCGCTGTCCTCGTCCGGGAGGAGAGGCTTCGAGGTATAGGCAATGGGGTGCTTGCTTCCTGAGTGCTCCTGCTGCAGGATGGCCGTCAGTGACACTTGGCTGACAGTCACATCCAG | - |
win_chr17_000066005 | chr17 | 8,448,512 | 8,448,767 | cds | Miniopterus schreibersii | Miniopterus_schreibersii | GCA_004026525.1 | 9,433 | Miniopteridae | mammals | 1 | zoonomia_cactus | MinSch_scaffold_1591 | 125,772 | 126,027 | - | 246,295 | 125,800 | 125,998 | 4 | 193 | AGTTTCCTTTTGTATTACCTATTTGTACACTATTTATTTAATTCATGGATTCTAATTTTTTTTTAGGGCAACAATAGTTTCACTGGAAGACTTTGAACAAAGGCTAAATCAGGCCATTGAACGAAATGCATTTTTAGAAAGTGAACTTGATGAAAAGGAATCTTTGTTGGTCTCTGTTCAGAGGTTAAAGGATGAAGCAAGAGGTAAAATTTATAACCTAACCGAAACCTTACTACCCCTGAGCCAGAGTTCTCA | + |
win_chr1_001258223 | chr1 | 161,052,416 | 161,052,671 | cds | Moschus moschiferus | Moschus_moschiferus | GCA_004024705.1 | 68,415 | Moschidae | mammals | 1 | zoonomia_cactus | MosMos_scaffold_630 | 67,125 | 67,380 | + | 226,612 | 67,125 | 67,379 | 7 | 249 | CCCCAGATGCGGCCCTACCACACCATCATAGAGATTGCAGAGCACAAGTAAGGCCTTCTTCCTGGGCCCTTCTCCCCTGCACTGGCCATCAGGCTCCAACTGCAGTGATTTCTCTACTCCCTCCAGGAGGAAGGGGTCTCTGAAGGTCAGGAAGTGGAGATCTATCTTCAATCTGGGTCGCTCTGGCCATGAGACCAAACGTAAAGCTCCACGGGGGGCTGAGGACAGGGGTAAGTCTGCGGAGATAGAGGGGGA | - |
win_chr14_000543532 | chr14 | 69,571,968 | 69,572,223 | cds | Falco cherrug | falChe1 | F_cherrug_v1.0/falChe1 | 345,164 | Falconidae | birds | 2 | ucsc_multiz100way | KB398048 | 2,928,664 | 2,928,919 | + | 5,268,049 | 2,928,664 | 2,928,919 | 11 | 254 | TCTTCTCCACTAGCTGTTCATAGTTCTCCTGAGCCTTCGTCAAACTCATCTCCAGGGAGGCCTTcagcatttccttctcttctgcctcttgCTTGGCCAGTTCCTTGAGCAAGGCCTCATGCTTCAGCTTCTCCGCTTGGTTGAgcagtttcttttgcttctgcagctgcaccTCCTTCTTCAGTCTCTTCTGCGCGGCTGTGGACAGCTTCTcttgcaggagctgctcctcTCGCTCCCGGTGCTCCTTCTTGC | + |
win_chr11_001022498 | chr11 | 130,879,616 | 130,879,871 | cds | Lycaon pictus | Lycaon_pictus | GCA_001887905.1 | 9,622 | Canidae | mammals | 1 | zoonomia_cactus | CM007569.1 | 4,082,434 | 4,082,689 | - | 88,915,096 | 4,082,439 | 4,082,684 | 7 | 238 | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGAAATACTCAGTCTGAATACAGATAGCAGATATCATGAGATAATCATGATAATCTTAGAACCTGGGGCTTCAGTGGTAACACTGAAACCACATCTGTTTTTTCCTCCTCAGATATTGTGGTAGAAATCCTTGGGGTGAACAGATGTCGACTGAGCTGGAGTCTAGTCTTGGAGTCACTACAGCAACCCCTCATCAACAGGTAGGCTGAAAG | - |
win_chrX_000025860 | chrX | 3,309,952 | 3,310,207 | cds | Solenodon paradoxus | Solenodon_paradoxus | GCA_004363575.1 | 79,805 | Solenodontidae | mammals | 1 | zoonomia_cactus | SolPar_flattened_line_11218 | 41,112 | 41,367 | - | 72,207 | 41,112 | 41,367 | 1 | 255 | CACGCCCGCCGGACCTGGACGCTCCCGGGCGGGCTGACCCTGGACGCGCCGCAAACGCGCGGGCGCGTCTCGCTGGGGGAAAACGGGACCCTGACGGTGCGCGACGCCTCCGTCTTTGACCGGGGCACCTACGTGTGTCGGGCCGACACCCCGCAGGCCGCGTGGCTCACCAGCTTCCCGGTGATCGTCATCGCCTACCCGCCGCGCATCACCAGCGAGCCGTCGCCCGTCATCTACACGCGGCCCGGGAGCAGC | - |
win_chr9_000604033 | chr9 | 77,316,096 | 77,316,351 | cds | Mus musculus | Mus_musculus | GCF_000001635.26 | 10,090 | Muridae | mammals | 1 | zoonomia_cactus | chr19 | 16,685,334 | 16,685,589 | - | 61,431,566 | 16,685,332 | 16,685,591 | 8 | 234 | ATCTTTAATGGCAGCAGTCACTGTATTGCTTGTAGGTTCACCTTTGCAGCAAATTTCACACTGTGTCGTAATGACTAAGGCAGGAGCATCGTTTCTTGTCATGTCAGCCACAAACACAATCTCTGGATTTTTAATAAGAATATTCATTTCCCACTTCCCTAATTCCTGTGCAGgtgctaaaataaaaataaacacatacattttACTTACAAATATTACTTAGGAAGAGTTTATGAGGAATAGGTAGTTACTTCA | - |
win_chr7_000836890 | chr7 | 107,121,792 | 107,122,047 | cds | Phocoena phocoena | Phocoena_phocoena | GCA_004363495.1 | 9,742 | Phocoenidae | mammals | 1 | zoonomia_cactus | PhoPho_flattened_line_19913 | 24,405 | 24,660 | - | 79,306 | 24,405 | 24,659 | 5 | 252 | CAAACTGGCTTTGGGGGGTAGACTGCTTGCCCTGGATGAGGTGAATTAATGGTTTTTTACACCACAGCCCTCTTTTTGTTCACTAATTTTTCAAGATATATTTATTGTAGCATGTTTCTTGGTGAAGGAATCTTTAAAATGTCCATTTTTATTTTTATAGTATGTGCAGAAGCTTATAATCCTGATGAAGAAGAAGATGATGCTGAGTCCAGGGTATGTAATTTACTGAATGCGTTAATTTTAAATTATACTCCC | + |
win_chr5_001098141 | chr5 | 140,561,920 | 140,562,175 | cds | Tragulus javanicus | Tragulus_javanicus | GCA_004024965.1 | 9,849 | Tragulidae | mammals | 1 | zoonomia_cactus | TraJav_scaffold_6157 | 128,548 | 128,803 | + | 153,576 | 128,546 | 128,804 | 7 | 253 | CCTGGACCACAGTCTGATCCACTGCCAGCCCCTGGTGCATATCCGTGTATGGGGTGTGGGCAGCTCCAAGGGCCGGTGAGAACCCCTGCATCCTTTGACATGAGAGTTGCTCCACCCTCCCCCTTGCAGGCTGTGATACCCACTGATGCTGATCCCCTGTACTTGAACCCCTGGACACAGGTCCTCTGACATGGACCCAAGCTCTGCTTCCCCTGCCTGATCCAGCCCTGGTTGGGGAGGGTGGGCTCCAGCTCA | - |
win_chr17_000038726 | chr17 | 4,956,800 | 4,957,055 | cds | Pithecia pithecia | Pithecia_pithecia | GCA_004026645.1 | 43,777 | Pitheciidae | mammals | 1 | zoonomia_cactus | tarseq_287 | 1,366,990 | 1,367,245 | + | 1,635,328 | 1,366,990 | 1,367,244 | 2 | 254 | CAACCCTCCAAATCCTTCTTCCCTCATCAGATCAAGACTGGCGCCCCCTGTCGCTCGGAGCGTCTGGCCAAATACAACCAACTCATGAGGTACAGTGAGAGCACTGGGCCTGGGCATTGGGGTACTGAAGGCTGTTGGGTTGGAAGGCAGCAGCCCTGACTTTGCCTGCATTCTAGGATCGAGGAAGCTCTTGGGGACAAGGCTATATTTGCTGGACGAAAGTTCCGTAACCCAAAGGCCAAGTGAGAAGCTGGA | + |
win_chr6_001190865 | chr6 | 152,430,592 | 152,430,847 | cds | Nannospalax galili | Nannospalax_galili | GCF_000622305.1 | 1,026,970 | Spalacidae | mammals | 1 | zoonomia_cactus | KL204747.1 | 2,366,269 | 2,366,524 | - | 2,463,256 | 2,366,264 | 2,366,528 | 4 | 251 | TTGGCTTTGATGCGTGCGGACTCCCCAGTGGTGACGTACTGAGCAAAAGACTGAGCTTCTTCTTCTAATCCTGTAAGGCTGCTGATCTTACTTTCTATTTCTTGAATTGCGACCTGgtatttaaaacaagaaaaaaatgacattggGGGCTTAACAGTCTCGCCTCCATGAAATGGTACAATCACCTGCAGAGACTATCAGGAGAGTTTCCTTAACTGACCTCCAAACACATTTGGGGAATGCAAGAGCAGCTGG | + |
win_chr3_001534312 | chr3 | 196,391,808 | 196,392,063 | cds | Hystrix cristata | Hystrix_cristata | GCA_004026905.1 | 10,137 | Hystricidae | mammals | 1 | zoonomia_cactus | HysCri_scaffold_13669 | 51,323 | 51,578 | - | 86,039 | 51,321 | 51,579 | 11 | 237 | TACTGTTTCAAAGCTGCCTTTATGCATCAAGTCAATGGGTGGCCGGAACAGATCTGCGAGTGTAGTTAGTTTCTTATCTATCGCTCCACCATTTCTTAGTTCCTGCTCTTGCCGAACTGCAATAAAAATTAATGACAAAATTTCAATTAGTCATAAAATAAAAGAAACCATGAATTGGGTTAAAAAAAAAATTACATCAATTGGAAGAATTACTAAACAATGTGCTTCACCTCAAATGCAAATACAAAGCTCTAA | + |
win_chr19_000431573 | chr19 | 55,241,216 | 55,241,471 | cds | Hystrix cristata | Hystrix_cristata | GCA_004026905.1 | 10,137 | Hystricidae | mammals | 1 | zoonomia_cactus | HysCri_scaffold_39950 | 14,607 | 14,862 | - | 33,038 | 14,604 | 14,865 | 11 | 240 | TGTGCCCCACAGCCCATTTTCCATACCAGCATGGTATTGGGCACATCCAACACCAGGAGCTCCTGCGTCAGGGCGGCATCATTAGCATTCAGGGCGCTGGCCAGGAGCTTCACCACATGCAGCCGTGTGTTCCCCAAGGGTGGGGCCAGGCTGCCCCATGTCATCTGCAGTGGCTCTAGCTGCTGGACCAGGAGACGCTCAGCTCCCGAAGAAGGCCACCTTTCCTGCCACCCCACCTCCCCTGGGGAGTAGTGA | + |
win_chr20_000323885 | chr20 | 41,457,152 | 41,457,407 | cds | Hydrochoerus hydrochaeris | Hydrochoerus_hydrochaeris | GCA_004027455.1 | 10,149 | Hydrochaeridae | mammals | 1 | zoonomia_cactus | HydHyd_scaffold_24707 | 18,319 | 18,574 | - | 44,948 | 18,325 | 18,568 | 9 | 238 | CACCGTATAGGCCAGAGCAAAGCTGTGAAGGTGTATCGCCTCATCACTCGGAACTCCTATGAGCGGGAAATGTTTGACAAGGCCAGCTTAAAGCTGGGCCTGGACAAGGCTGTCCTTCAGGACATCAATCGAAAGGGTGGCACCAATGGAGTAAGTATGCTGGAAGTGCTTTGGAGTGTGAGGAGTACTTGTGCAACACAGGTCTTCCTGACAATTGTTTCTAGATTTCTTTTACCATATTGAGTCAACCCACAT | - |
win_chr19_000148886 | chr19 | 19,057,280 | 19,057,535 | cds | Chinchilla lanigera | Chinchilla_lanigera | GCF_000276665.1 | 34,839 | Chinchillidae | mammals | 1 | zoonomia_cactus | JH721984.1 | 2,696,132 | 2,696,387 | - | 4,477,440 | 2,696,170 | 2,696,349 | 8 | 173 | CAGCCCAGGTCCCGGAGGGCGGCCTTGGCCACGTCCTCGCAGTCCTGGTGGGCCGCCCGCGCCTGCGCGATGAGCGCCTCCGCGCCCAGGTCCAGGAGGGGCTTGGAGAAGGCCTGGCTCCTGGACACCAGGTTGCGGATGAGCATGCAGGCCTGTTTCTGTGGAGAGGGGAAGTGAGGCGGGGCAGGCGGGTCTCGGGCCGGGCTCCCCTCTGCCCGCGGGGCCTCGCAGCATGACGGCTGTGCACCGtaaggc | - |
win_chr2_001395423 | chr2 | 178,614,016 | 178,614,271 | cds | Cryptoprocta ferox | Cryptoprocta_ferox | GCA_004023885.1 | 94,188 | Eupleridae | mammals | 1 | zoonomia_cactus | CryFer_flattened_line_9575 | 105,382 | 105,637 | + | 145,206 | 105,377 | 105,642 | 5 | 252 | TTTTTTTAAATTTTGGTCACCTGATTAAAGAGAAGCTTACCAAATGGATATTTAGCTGTTACTGGAGCAGCCTGAACTGGTTCACCAACACCATACATATTTTCTGCAGCAACTCTGAAGATGTATTCTTTATTGGGTGTTAATTTGGTTGCCTTGTAGTTTGTATCCTTGACAGTTGATGAGAGCTTGTGCCACACTTCACTGTCGGTTGCTCTCCTTTCCACGACATAGTTTGTGATTTTAGATCCACCATCA | + |
win_chr5_000600607 | chr5 | 76,877,568 | 76,877,823 | cds | Danio rerio | danRer10 | Zv10/danRer10 | 7,955 | Danionidae | ray-finned_fish | 6 | ucsc_multiz100way | chr21 | 7,258,721 | 7,258,976 | - | 45,895,719 | 7,258,772 | 7,258,925 | 4 | 153 | TATCTGTATGCGGCTGTGCTGAGCAGTTCTTGTTGTTATTGTGTGTGTGTGTTTCAGTCTCAGAAGGACCCGATGCTGGTGGAGAAGATCATGAACGATCTGGACTCCAACAAGGACAACGAGGTGGACTTTAATGAGTTTGTGGTTCTGGTGGCGGCGCTGACTGTGGCCTGTAACGACTTCTTCCAGGAACAACAGAAGAAAAGGAGCAAATAGAACACATTGTATACCCGTAATGCTCTATGACGCATTAAA | + |
win_chr11_001010752 | chr11 | 129,376,128 | 129,376,383 | cds | Lipotes vexillifer | Lipotes_vexillifer | GCF_000442215.1 | 118,797 | Lipotidae | mammals | 1 | zoonomia_cactus | KE559370.1 | 182,023 | 182,278 | - | 416,290 | 182,017 | 182,283 | 6 | 241 | GGAGACCTGCGACTACTTTGAGAAACTTTCCCTCTACTCCATGTGCCCGTCGCTGGTCGTGCGACCCAAGCCCCTGCATTCCTGTACCGGTAAGACGGCCCGCGGGAGCGCAGTGGGGTGTGGCCGCTTTCGTGCCGGGGTCGGACGCTTGACCACCTCTGTCCTCCCACCCAAGGGCGAGAGGAAGGGGCCCGGGTAATGTGGGCCCCTGCAAGAGGACTAGACTTGTCCGAGGCGAGCATTGCGGAGGCCTCT | + |
win_chr7_000648043 | chr7 | 82,949,376 | 82,949,631 | cds | Petromyzon marinus | petMar2 | WUGSC_7.0/petMar2 | 7,757 | Petromyzontidae | jawless_vertebrates | 7 | ucsc_multiz100way | GL476335 | 1,308,297 | 1,308,552 | - | 2,214,433 | 1,308,287 | 1,308,562 | 16 | 236 | AACTCGTGGATTAATTCCACCAAATGATTTGCACCACCACGAACAAATAATCAACAACAAtatttcaaagtaaaaaaaacacatgcagaTAAATAACAAACTTACCAGgcagctctgctgctgctgaaacagcTGGTAGGACGTCTTTCCATCCTCGCCCGTGGGACTCAGAGGCTTGGGATCTGACATTGAGCGCTGCATGGGCTTGGTCATGCGCAGGCTCTGTGGGTGCTGCGGCGGCGGAGTCACGGAGCC | + |
win_chr11_000489886 | chr11 | 62,705,280 | 62,705,535 | cds | Nannospalax galili | Nannospalax_galili | GCF_000622305.1 | 1,026,970 | Spalacidae | mammals | 1 | zoonomia_cactus | KL201543.1 | 614,515 | 614,770 | - | 1,145,754 | 614,517 | 614,767 | 2 | 250 | TCTAGGCAGCCTTCTCACCTGTAGTAGAAATGCACAGGGCTGAGGTGGCTGACAGTCGGCATGTAGGAATAGTAGAAGgagccatagaggaacactgacACCCAAAGCAGGAGGAGGACGGTGCAGAAGAGCACCCCAAACTGCAGCAGCAGCCTGCGGGCACGACCTGCCAAGATGTGGCCCACTTCCTGGGCCCACAGTAAAGCTGGCACTGGTGGGTCATTGATCATGACAGGGACAGCGGAGGGTCTGGCC | + |
win_chr6_000852296 | chr6 | 109,093,760 | 109,094,015 | cds | Lepilemur ruficaudatus | Lepilemur_ruficaudatus | GCA_963574885.1 | 78,866 | Lepilemuridae | mammals | 1 | zoonomia_cactus | k141_439268 | 22,324 | 22,579 | - | 48,354 | 22,324 | 22,579 | 1 | 255 | CTAGAGAGACAGCACTGGAAAACATTAGGCAAATCATTTTGAGAAAAACCGAGTATCTTCGTTCGGTGAAAGAGACGCCTTGTCGTCCATCAGACGGGCTTTCAAATACTGTTTCTTTGGACGGATTGAATAAGCTGCTTGCTCATCTGCTTATGCTTTCTAAGAGATGTCCCTTTAAAGATGTAAGAGAGAAAAGTGAGTTTATTCTGAAGAGCATCCAGGTAAGAAAGAGCATTTTGAGTACAACTGTCTCTC | - |
win_chr1_001153288 | chr1 | 147,620,736 | 147,620,991 | cds | Catagonus wagneri | Catagonus_wagneri | GCA_004024745.1 | 51,154 | Tayassuidae | mammals | 1 | zoonomia_cactus | CatWag_scaffold_2371 | 149,225 | 149,480 | - | 231,388 | 149,225 | 149,480 | 4 | 228 | ACCCCCTGAAATCTCCCACCATGCGCCAAGTCCAGTCACCGATGCTGGGCTCGCCCTCGGGGAACCTCAAGTCCCCCCAGACTCCGTCGCAGCTGGCAGGCATGCTGGCGGGCCCAGCTGCTGCTGCTTCCATTAAGTCCCCCCCTGTCTTGGGGTCTGCTGCTGCTTCGCCTGTTCACCTCAAGTCTCCGTCACTTCCCGCCCCGTCACCTGGATGGACCTCCTCTCCAAAACCTCCCCTTCAGAGTCCTGGGA | + |
win_chr17_000469111 | chr17 | 60,046,080 | 60,046,335 | cds | Ailurus fulgens | Ailurus_fulgens | GCA_002007465.1 | 9,649 | Ailuridae | mammals | 1 | zoonomia_cactus | LNAC01000022.1 | 1,800,233 | 1,800,488 | + | 11,224,734 | 1,800,216 | 1,800,505 | 7 | 243 | TTGTCTTGTTGGCACTAAGACTTCCTGggttttttaaagctgaaattaAGCTTTCTGTAACATCTCTTTGGCAAAGCAGATTTCtaatgcttttttaattttttttttaacatttttttctaggtaaAAAGCAATGCAGTCCGGGCCCTTGGAAATCTGCTTCATTTTTTGCAGCCATCTCATATAGAAAAGCCCAGGTTTGCTGAAATCATTGAGGAGTCCATCCAGGCCCTAATTTCTACTGTTCTAATGGAG | - |
win_chr6_000890313 | chr6 | 113,959,936 | 113,960,191 | cds | Oryctolagus cuniculus | Oryctolagus_cuniculus | GCF_000003625.3 | 9,986 | Leporidae | mammals | 1 | zoonomia_cactus | CM000801.1 | 101,913,744 | 101,913,999 | + | 155,355,395 | 101,913,744 | 101,913,999 | 11 | 245 | TGTCTTGGTTTTCTAATATAGTTTGCAAGTTGTAAAATAAAGCCAATACCATTTTAGATATCTAATGAAATTTTACTTATGGTAAATGTTTCCTAACGTTTGACATACATAAATTCAGATACTTGTAAGGATGCTTTTATCTGTATTGTTCAGTTTATGTCTTCCTATTTTAGGTGACATTGGAAATTATTATTATGGACAGGGTCATCCCATGAAACCTCACAGAATCCGCATGACCCATAACTTGCTGTTAAA | - |
win_chr5_001159391 | chr5 | 148,401,920 | 148,402,175 | cds | Otolemur garnettii | Otolemur_garnettii | GCF_000181295.1 | 30,611 | Galagidae | mammals | 1 | zoonomia_cactus | GL873522.1 | 27,565,885 | 27,566,140 | - | 48,283,576 | 27,565,887 | 27,566,137 | 4 | 250 | TAATGCCAAAATATCCAACCAGGTGCACTCACCACTAAGTTCGGGCATGCCTGCAAAGCTTCTAGGACTCCTGGGATGCTAAACGCCTCATGGCCCCTTACTCTTCGCCTTTCAAGGTATCGAGGGTGAAGGCCATATAACTGTTCGACATCTGGCATCTTCTTCAATAGTGTTAGAAAACTGGAATCTGTGAAGCCTGAGAAGTTCAAAAGTATTTAGAGCCAAATCTTccctttattaacatttattatgcac | - |
win_chr17_000641255 | chr17 | 82,080,512 | 82,080,767 | cds | Mungos mungo | Mungos_mungo | GCA_004023785.1 | 210,652 | Herpestidae | mammals | 1 | zoonomia_cactus | MunMun_flattened_line_14289 | 62,587 | 62,842 | - | 95,589 | 62,587 | 62,841 | 17 | 196 | GAGGGCTCCATCGCTGTGTTCCGCAGCCTGGCGTCTAGGCTCAGCATCCCCACCTACGGCTTGCAGTGCACGCGAGGTGCGAGCTGGCCCGCCAGGCTGGCTGTCCCCACCCCTACTAACGCAGGGGGGCACGGGGGCCCCTCCTGCCCACGACTGAGCTTCCTTCCACCCCACAGCTGCGCCCCTGGACAGCATCCAGAGTCTGGCCGCCTACTACATCGAGTGCATCAGGCAGGTGCAGCCGGAGGGGCCCTA | - |
win_chr8_001131648 | chr8 | 144,850,816 | 144,851,071 | cds | Geosciurus inauris | Xerus_inauris | GCA_004024805.1 | 3,371,099 | Sciuridae | mammals | 1 | zoonomia_cactus | XerIna_scaffold_30580 | 37,017 | 37,272 | + | 47,310 | 37,017 | 37,272 | 1 | 255 | CACGCTCTTCTGCAGCAGGCCCTCCGGCTTCCGCCTCCCATCCCGAAGCCCAGTGCCTTCAAGGACCAACTTCAGGAGCTCGGCATCCCCCAGGACCTGATTGGGGACTTGACCAGTGTGGTATTTGGTGGCCAGCGCCCCCTCCTGGACTCTGTGGCCCAGCAGCAGGGTGCCTGGCTTCCCCACGTTGCCGACTTTAGGTGGAGGGTAGATGTGGCCATTTCCACCAGTGCCCTGGCCCGCTCCCTGCAGCCG | - |
win_chr10_000700898 | chr10 | 89,714,816 | 89,715,071 | cds | Carlito syrichta | Carlito_syrichta | GCF_000164805.1 | 1,868,482 | Tarsiidae | mammals | 1 | zoonomia_cactus | NW_007245725.1 | 340,085 | 340,340 | - | 427,648 | 340,086 | 340,339 | 6 | 247 | tctaaaaGTGTTTAGCATAGGGGGTCAAAGATTAAGGATTTTTGGTTTTTCAAGTCCATGAGTCTTGACCTGTAGTTTTGTCTAAGTTTTAGTCAGTTGAATGATTTTGTGATTatcccttttcttttattttgtaggaagTTTAACAAACTCTTTGAATATCACAGAGTTTGAAGAATCCATGAAAGATTGTGAACAAGCTAGCTTGAATAtggataataatataaaattttctgtgtggatttctttctttga | + |
win_chr3_000504166 | chr3 | 64,533,120 | 64,533,375 | cds | Petromus typicus | Petromus_typicus | GCA_004026965.1 | 10,183 | Petromuridae | mammals | 1 | zoonomia_cactus | PetTyp_scaffold_15386 | 14,327 | 14,582 | - | 59,843 | 14,379 | 14,530 | 6 | 137 | CCGAGCCCTGCCGAGAGCCTCCTGGGTCGGCGCAGGTGGAGGTGCCTGGCCGCGCGGCTCCGGCGACCTGAGCCCTCCGTGTGTTCCAGGGTCGCTTCAGCATCAACCTGGACGGGACCGGCCTGTCCGTGACCGAGGCGGCCCGCTGGATATCGCAGGGGAACTACGCCGTCTCGGACATCAAGAAGTCCCCGGTGAGGCCGCCTCCCTGTCCTCGTCCTTCCTGGGCCTCCCCCAGGTCGAGCGCGGCGCTGC | - |
win_chr1_000273554 | chr1 | 35,014,784 | 35,015,039 | cds | Octodon degus | Octodon_degus | GCF_000260255.1 | 10,160 | Octodontidae | mammals | 1 | zoonomia_cactus | JH651645.1 | 2,664,209 | 2,664,464 | + | 7,965,889 | 2,664,212 | 2,664,460 | 6 | 244 | TTCTCACAGCAGTTCATAGTGAGGTTGTTGGTggaatgaaattttgaaaaacaagcaTCACTACAAAGACCGTGCACCACATTTTGATACTTAACTTCAAATCGAATCtaggaaagagaaacacacacacatacaaaataagcAGAGCCAGTTTAAATGCCTCTGATTTTTGAACAAAATCTCAGTAAAAGTAACTTACATCAGCATTTTTCTGACACATACTGCATTTAGTTGAAGTACTATTGGTATATATGG | + |
win_chr8_000740498 | chr8 | 94,783,616 | 94,783,871 | cds | Chelonia mydas | cheMyd1 | CheMyd_1.0/cheMyd1 | 8,469 | Cheloniidae | reptiles | 3 | ucsc_multiz100way | KB564342 | 362,265 | 362,520 | + | 671,264 | 362,273 | 362,511 | 19 | 213 | aatattgttttagaaAATATGTCCTTGTACTCAAATGCATGAAGTGATATTGTTTTTTGCAGAAGACAGGCTCCTGTTGCTGCTGTGTTTGCTGGAAGTCCACAGCTAATGGGTATGATTAAGCTGTGTACTGGATGGATGGTGACAAGTCTACCTTTATATGATGATGTTGATCTTCTACAAAGAAATGAGAATGTGAGTATCTGATTCCAAAAATGTATTGTGGTATCAGTGATTCATTCTTCATTCGTTATG | + |
win_chr4_000691112 | chr4 | 88,462,208 | 88,462,463 | cds | Lycaon pictus | Lycaon_pictus | GCA_001887905.1 | 9,622 | Canidae | mammals | 1 | zoonomia_cactus | CM007557.1 | 11,760,708 | 11,760,963 | + | 38,806,596 | 11,760,701 | 11,760,969 | 6 | 250 | AGCTTGTGGAGCACCTCTCAGGAGTCCCATTGGTTCAGATTTCCGCGGGAAAAGCCCACAGCATGGCCTTATCCATGTCTGGAAACATTTACTCATGGGGAAGAAATGATTTGGGACAACTAGGCCTGGGCCACACTAACGGTATGGAAACATATTTTCAAGCTCTTATTGtcaaatatatttgttagatAAGAGATGAATTTAACTCGAGGGAGGGCCTTCCTGTCAAAAATGGTTTAGATCTTCACTGTCATT | + |
win_chr15_000394523 | chr15 | 50,498,816 | 50,499,071 | cds | Cryptoprocta ferox | Cryptoprocta_ferox | GCA_004023885.1 | 94,188 | Eupleridae | mammals | 1 | zoonomia_cactus | CryFer_flattened_line_114 | 44,818 | 45,073 | + | 863,935 | 44,821 | 45,069 | 11 | 237 | AATAAGAACATAAAGCTTCAAATTCCTTAAAATATGTCAGTAATTTTCGGTTTGAACTGATTTTCTATCTTGTTTGGCACAGAATCACTACGGCGGGCTGGATGGAGGCCACTACACTGCCTATTGTAAAAATGCAGCAAGACAGCGGTGGTTTAAATTTGATGACCATGAAGTCTCTGATATCTCTGTTTCTTCCGTGAAGTCTTCGGCAGCTTATATCCTCTTTTATACTTCACTGGGACCACGAGCAACAGA | + |
win_chr1_000343757 | chr1 | 44,000,768 | 44,001,023 | cds | Thryonomys swinderianus | Thryonomys_swinderianus | GCA_004025085.1 | 10,169 | Thryonomyidae | mammals | 1 | zoonomia_cactus | ThrSwi_scaffold_3728 | 45,845 | 46,100 | - | 84,588 | 45,845 | 46,100 | 6 | 252 | CTACGCGGCCAGCTTCTCCTTGGTCGTCATCTCCTCCATCATGTGTGTGTCCATCATGTACATCTACGGTACGTGCCTGCGCTCCCACAGCCTCACGGGTCCCAGTCCCTGGCTGCCCCACTCTGTCCCGCTGGCCGCTGACCCCGATCTCTCCAGGGCACAGGAACTACTTTGAGGACATCCAGATGATGCTGGGGTTCCCACCACCCCTCTTCTTCCAGATCTGCTGGCGTTTTGTCTCTCCGGCCATCATCT | - |
win_chr10_000589060 | chr10 | 75,399,552 | 75,399,807 | cds | Bos taurus | Bos_taurus | GCF_000003205.7 | 9,913 | Bovidae | mammals | 1 | zoonomia_cactus | CM000204.6 | 31,427,481 | 31,427,736 | + | 46,481,278 | 31,427,481 | 31,427,736 | 1 | 255 | AACCAGCACCCAGATGGGGGCCCCGGGGGCAAGGCTCTAGGTTCGGACTGCGGCGGCTCATCAGGCTCCGGCTCCGGCTCCGGCCCCAGTGCGcccacctcctcctctgtgtTGGGCTCTGGGCTAGTGGCGCCCGTGTCGCCCTACAAGCCGGGCCAAACAGTGTTCCCTCTGCCTCCCGCGGGCATGACCTACCCAGGGAGCCTGGCTGGGGCCTACGCCGGCTACCCGCCCCAGTTCCTGCCACACGGCGTG | - |
win_chr12_000435361 | chr12 | 55,726,080 | 55,726,335 | cds | Inia geoffrensis | Inia_geoffrensis | GCA_004363515.1 | 9,725 | Iniidae | mammals | 1 | zoonomia_cactus | IniGeo_flattened_line_1144 | 110,343 | 110,598 | - | 187,800 | 110,345 | 110,595 | 9 | 242 | AGGAGATTCTCATCTCCATGTTGAAGATTGGAGGTTCACCTAACAGCCTTTTCCCCATATCTTTCCGCAGTTTAAGTGCTGCGGGGCGGCTAACTACACAGACTGGGAGAAGATCCTGATCATGCCCAAGCGAGTCCCTGACTCCTGCTGTGTCAATGTCACTCAGGGCTGTGGGATTAATTTCAACGTGAAGGATATCCATACTGAGGTAGGGAGGGGGCTGAGGTAGTAGGGGACTTGGGGAAGCTGGGAAAT | - |
win_chr14_000391822 | chr14 | 50,153,088 | 50,153,343 | cds | Ateles geoffroyi | Ateles_geoffroyi_a | GCA_004024785.1 | 9,509 | Atelidae | mammals | 1 | zoonomia_cactus | k141_338838 | 11,519 | 11,774 | - | 45,262 | 11,518 | 11,774 | 2 | 255 | TCTTCTCTTGTAATTGAAGCACTTAAGGTATTAATTAAATACAGATTTGAGAGTCTTTGAGTATTGTATTGACCCTTGTGTATAAAGCTATCATCATGGCATGAGAGAAGTGAAGAAGTGTAATTGAACACTTAGGGTTCACTAAAATATGTTTCTTTCCATTTTACCAGGATTTTAAATGTATTTCGGCATTGGGTTGAACATCATTTTTACGACTTTGAAAGAGATTTGGAATTACTTGAAAGACTAGAATCC | - |
win_chr1_000512515 | chr1 | 65,601,792 | 65,602,047 | cds | Galeopterus variegatus | Galeopterus_variegatus | GCA_004027255.1 | 482,537 | Cynocephalidae | mammals | 1 | zoonomia_cactus | GalVar_scaffold_21175 | 45,285 | 45,540 | + | 59,749 | 45,283 | 45,541 | 2 | 255 | TACCAGACTACTATTATGGTGATATTTCCAAAGAAAATTTTTCTCTCACCATACCCACAGAAAAATAAAACAACAAAAATAATACATACCTATAATACATCAACTGCAAAGTACTTCCCACAAGTGattggactggactggctgaccatctgcaagtcattttagctaagtacccatcagtttcacatgatatattgatattggtatctattgaaaacacattaaaatattaatataaagCAAAAACGCCAAAAA | - |
win_chr9_000273365 | chr9 | 34,990,592 | 34,990,847 | cds | Erinaceus europaeus | Erinaceus_europaeus | GCF_000296755.1 | 9,365 | Erinaceidae | mammals | 1 | zoonomia_cactus | JH835476.1 | 1,066,961 | 1,067,216 | - | 3,634,003 | 1,066,960 | 1,067,217 | 4 | 253 | ACAGGTATGATGAGCGCCCTTCTCCGAGGGACTTACCGAAACTTTACAAACCCATTCAGCGTCCACGCTCGAAGTTTTAGGGGCTCCAGCTGAATTTTAAACATCAAGCTGGCTAAGAAGTCTTCTCCCCAGAAGTGTGGGAAGCTCCGGGAAGCTCCTCGGGCCTGCAGTgtgggtgctgctggggatgggcAGGAGAGCGCTGTGCGCTTAAACATGCCCAGCCCGGCCCCTCACCTCGGATCGCTCCACGGG | - |
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marin-dna/vertebrate-v1-cds
Human-anchored 255 bp vertebrate sequences from the Zoonomia 447-mammal Cactus alignment and UCSC hg38 MultiZ 100-way alignment. This
draft covers the cds region cohort with all species
scope and preserves source FASTA/2bit letter case.
Anchor eligibility uses the pipeline's pinned phyloP conservation filter. Sequence case is independent of that filter: lowercase bases preserve source repeat masking, uppercase bases preserve source non-repeat-masked sequence, and conservation scores never rewrite emitted characters or case.
Produced by the commit-pinned vertebrate projection pipeline.
Splits
train: 66,552,602 rows; no chromosome-18 source anchors.validation: 16,384 original-orientation chromosome-18 rows (4,194,304 tokens including BOS).
The selected target manifest contains 135 family-deduplicated projection targets; human reference rows are added separately once per anchor.
| Projection backend | Clade | Selected species |
|---|---|---|
| ucsc_multiz100way | amphibians | 1 |
| ucsc_multiz100way | birds | 11 |
| ucsc_multiz100way | jawless_vertebrates | 1 |
| ucsc_multiz100way | lobe-finned_fish | 1 |
| ucsc_multiz100way | ray-finned_fish | 9 |
| ucsc_multiz100way | reptiles | 5 |
| zoonomia_cactus | mammals | 107 |
Schema
query_name:Stringsource_chrom:Stringsource_start:Int64source_end:Int64region_label:Stringspecies:Stringalignment_name:Stringassembly:Stringtaxonomy_id:Int64family:Stringclade:Stringphylogenetic_rank:Int64alignment_source:Stringt_chrom:Stringt_start:Int64t_end:Int64t_strand:Stringt_src_size:Int64pre_resize_t_start:Int64pre_resize_t_end:Int64fragment_count:Int64aligned_bases:Int64sequence:Stringaugmentation:String
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