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eval_track string | paper_id string | doi string | title string | version string | date_received string | category string | published_journal string | published_doi string | published_date string | sjr_rank int64 | sjr float64 | cit_per_doc_2yr float64 | xml_path string | candidate_journal_set string |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
biochemistry | 10.1101_2024.10.01.616059_v1 | 10.1101/2024.10.01.616059 | Evolutionary origins and innovations sculpting the mammalian PRPS enzyme complex | v1 | 2024-10-01 | Biochemistry | Nature Communications | 10.1038/s41467-025-61216-z | 2025-07-08 | 71 | 4.761 | 14.63 | extracted_data/October_2024/10.1101_2024.10.01.616059_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.05.616782_v1 | 10.1101/2024.10.05.616782 | Structure and function of the yeast amino acid-sensing SEAC-EGOC supercomplex | v1 | 2024-10-05 | Biochemistry | Nature Structural & Molecular Biology | 10.1038/s41594-026-01746-2 | 2026-03 | 48 | 6.187 | 6.42 | extracted_data/October_2024/10.1101_2024.10.05.616782_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.07.616933_v1 | 10.1101/2024.10.07.616933 | Mining the CRBN Target Space Redefines Rules for Molecular Glue-induced Neosubstrate Recognition | v1 | 2024-10-07 | Biochemistry | Science | 10.1126/science.adt6736 | 2025-07-03 | 19 | 10.416 | 15.26 | extracted_data/October_2024/10.1101_2024.10.07.616933_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.08.617196_v1 | 10.1101/2024.10.08.617196 | Enhancement of Enzymatic Activity by Biomolecular Condensates through pH Buffering | v1 | 2024-10-08 | Biochemistry | Nature Communications | 10.1038/s41467-025-61013-8 | 2025-07-10 | 71 | 4.761 | 14.63 | extracted_data/October_2024/10.1101_2024.10.08.617196_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.09.617371_v1 | 10.1101/2024.10.09.617371 | Structural basis of TMPRSS11D specificity and autocleavage activation | v1 | 2024-10-09 | Biochemistry | Nature Communications | 10.1038/s41467-025-59677-3 | 2025-05-10 | 71 | 4.761 | 14.63 | extracted_data/October_2024/10.1101_2024.10.09.617371_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.14.618244_v1 | 10.1101/2024.10.14.618244 | A human high-fidelity DNA polymerase holoenzyme has a wide range of lesion bypass activities | v1 | 2024-10-14 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf646 | 2025-07-08 | 34 | 7.776 | 16.9 | extracted_data/October_2024/10.1101_2024.10.14.618244_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.14.618260_v1 | 10.1101/2024.10.14.618260 | Sequential structure probing of cotranscriptional RNA folding intermediates | v1 | 2024-10-14 | Biochemistry | Nature Communications | 10.1038/s41467-025-60425-w | 2025-06-01 | 71 | 4.761 | 14.63 | extracted_data/October_2024/10.1101_2024.10.14.618260_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.15.614675_v1 | 10.1101/2024.10.15.614675 | ‘Identification of RING E3 pseudoligases in the TRIM protein family’ | v1 | 2024-10-15 | Biochemistry | Nature Communications | 10.1038/s41467-025-58807-1 | 2025-04-11 | 71 | 4.761 | 14.63 | extracted_data/October_2024/10.1101_2024.10.15.614675_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.17.618737_v2 | 10.1101/2024.10.17.618737 | Molecular mechanism of thyroxine transport by monocarboxylate transporters | v2 | 2024-10-17 | Biochemistry | Nature Communications | 10.1038/s41467-025-59751-w | 2025-05-14 | 71 | 4.761 | 14.63 | extracted_data/October_2024/10.1101_2024.10.17.618737_v2.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.18.619134_v1 | 10.1101/2024.10.18.619134 | High-resolution mapping of Sigma Factor DNA Binding Sequences using Artificial Promoters, RNA Aptamers and Deep Sequencing | v1 | 2024-10-18 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf306 | 2025-04-10 | 34 | 7.776 | 16.9 | extracted_data/October_2024/10.1101_2024.10.18.619134_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.18.619173_v1 | 10.1101/2024.10.18.619173 | Drp1-mediated mitochondrial fission protects macrophages from mtDNA/ZBP1-mediated sterile inflammation and inhibits post-infarct cardiac remodeling | v1 | 2024-10-18 | Biochemistry | Cardiovascular Research | 10.1093/cvr/cvag006 | 2026-03-16 | 100 | 3.947 | 9.65 | extracted_data/October_2024/10.1101_2024.10.18.619173_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.22.619592_v3 | 10.1101/2024.10.22.619592 | Structural basis for a dual-function type II-B CRISPR-Cas9 | v3 | 2024-10-22 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf585 | 2025-06-20 | 34 | 7.776 | 16.9 | extracted_data/February_2025/10.1101_2024.10.22.619592_v3.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.23.619806_v2 | 10.1101/2024.10.23.619806 | Iron-sensing and redox properties of the hemerythrin-like domains of Arabidopsis BRUTUS and BRUTUS-LIKE2 proteins | v2 | 2024-10-23 | Biochemistry | Nature Communications | 10.1038/s41467-025-58853-9 | 2025-04-24 | 71 | 4.761 | 14.63 | extracted_data/March_2025/10.1101_2024.10.23.619806_v2.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.23.619915_v1 | 10.1101/2024.10.23.619915 | Evolutionary-Scale Enzymology Enables Biochemical Constant Prediction Across a Multi-Peaked Catalytic Landscape | v1 | 2024-10-23 | Biochemistry | Science | 10.1126/science.adu1058 | 2025-06-12 | 19 | 10.416 | 15.26 | extracted_data/October_2024/10.1101_2024.10.23.619915_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.23.619951_v1 | 10.1101/2024.10.23.619951 | PACT prevents aberrant activation of PKR by endogenous dsRNA without sequestration | v1 | 2024-10-23 | Biochemistry | Nature Communications | 10.1038/s41467-025-58433-x | 2025-04-08 | 71 | 4.761 | 14.63 | extracted_data/October_2024/10.1101_2024.10.23.619951_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.24.620088_v1 | 10.1101/2024.10.24.620088 | Topological rearrangements activate the HerA-DUF anti-phage defense system | v1 | 2024-10-24 | Biochemistry | Molecular Cell | 10.1016/j.molcel.2025.02.001 | 2025-03 | 26 | 9.051 | 12.04 | extracted_data/October_2024/10.1101_2024.10.24.620088_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.25.620255_v1 | 10.1101/2024.10.25.620255 | A sequence-specific RNA acetylation catalyst | v1 | 2024-10-25 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf217 | 2025-03-20 | 34 | 7.776 | 16.9 | extracted_data/October_2024/10.1101_2024.10.25.620255_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.25.620263_v1 | 10.1101/2024.10.25.620263 | Human-mouse proteomics reveals the shared pathways in Alzheimer’s disease and delayed protein turnover in the amyloidome | v1 | 2024-10-25 | Biochemistry | Nature Communications | 10.1038/s41467-025-56853-3 | 2025-02-11 | 71 | 4.761 | 14.63 | extracted_data/October_2024/10.1101_2024.10.25.620263_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.26.620442_v1 | 10.1101/2024.10.26.620442 | Autocatalytic assembly of a chimeric aminoacyl-RNA synthetase ribozyme | v1 | 2024-10-26 | Biochemistry | Science Advances | 10.1126/sciadv.adu3693 | 2025-04-04 | 79 | 4.324 | 12.06 | extracted_data/October_2024/10.1101_2024.10.26.620442_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.10.29.620861_v1 | 10.1101/2024.10.29.620861 | Directed evolution of the multicopper oxidase laccase for cell surface proximity labeling and electron microscopy | v1 | 2024-10-29 | Biochemistry | Nature Chemical Biology | 10.1038/s41589-025-01973-6 | 2025-12 | 56 | 5.521 | 7.32 | extracted_data/October_2024/10.1101_2024.10.29.620861_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.04.621790_v1 | 10.1101/2024.11.04.621790 | Constitutive activity of an atypical chemokine receptor revealed by inverse agonistic nanobodies | v1 | 2024-11-04 | Biochemistry | Nature Communications | 10.1038/s41467-025-65858-x | 2025-12-02 | 71 | 4.761 | 14.63 | extracted_data/November_2024/10.1101_2024.11.04.621790_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.05.622009_v1 | 10.1101/2024.11.05.622009 | Discovery of A Chimeric Polyketide Family as Cancer Immunogenic Chemotherapeutic Leads | v1 | 2024-11-05 | Biochemistry | Journal of the American Chemical Society | 10.1021/jacs.4c09582 | 2025-01-08 | 55 | 5.554 | 15.01 | extracted_data/November_2024/10.1101_2024.11.05.622009_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.06.618433_v1 | 10.1101/2024.11.06.618433 | Light-dependent flavin redox and adduct states control the conformation and DNA binding activity of the transcription factor EL222 | v1 | 2024-11-06 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf215 | 2025-03-20 | 34 | 7.776 | 16.9 | extracted_data/November_2024/10.1101_2024.11.06.618433_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.08.618644_v5 | 10.1101/2024.11.08.618644 | Shifting Beyond Classical Drug Synergy in Combinatorial Therapy through Solubility Alterations | v5 | 2024-11-08 | Biochemistry | Nature Communications | 10.1038/s41467-026-70394-3 | 2026-03-25 | 71 | 4.761 | 14.63 | extracted_data/August_2025/10.1101_2024.11.08.618644_v5.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.09.622779_v2 | 10.1101/2024.11.09.622779 | DnaB and DciA: Mechanisms of Helicase Loading and Translocation on ssDNA | v2 | 2024-11-09 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf521 | 2025-06-20 | 34 | 7.776 | 16.9 | extracted_data/May_2025/10.1101_2024.11.09.622779_v2.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.11.622991_v1 | 10.1101/2024.11.11.622991 | Microtubule association induces a Mg-free apo-like ADP pre-release conformation in kinesin-1 that is unaffected by its autoinhibitory tail | v1 | 2024-11-11 | Biochemistry | Nature Communications | 10.1038/s41467-025-61498-3 | 2025-07-05 | 71 | 4.761 | 14.63 | extracted_data/November_2024/10.1101_2024.11.11.622991_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.11.623112_v2 | 10.1101/2024.11.11.623112 | Structures of vertebrate R2 retrotransposon complexes during target-primed reverse transcription and after second strand nicking | v2 | 2024-11-11 | Biochemistry | Science Advances | 10.1126/sciadv.adu5533 | 2025-06-20 | 79 | 4.324 | 12.06 | extracted_data/November_2024/10.1101_2024.11.11.623112_v2.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.13.623453_v2 | 10.1101/2024.11.13.623453 | Mechanism-based approach in designing patient-specific combination therapies for nonsense mutation diseases | v2 | 2024-11-13 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf216 | 2025-03-20 | 34 | 7.776 | 16.9 | extracted_data/December_2024/10.1101_2024.11.13.623453_v2.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.13.623519_v1 | 10.1101/2024.11.13.623519 | Structural basis of augment taurine uptake by taurine transporter alleviating cellular senescence | v1 | 2024-11-13 | Biochemistry | Cell Research | 10.1038/s41422-025-01090-y | 2025-03-20 | 27 | 8.74 | 9.06 | extracted_data/November_2024/10.1101_2024.11.13.623519_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.17.623997_v1 | 10.1101/2024.11.17.623997 | AcrVIB1 inhibits CRISPR-Cas13b immunity by promoting unproductive crRNA binding accessible to RNase attack | v1 | 2024-11-17 | Biochemistry | Molecular Cell | 10.1016/j.molcel.2025.01.020 | 2025-03 | 26 | 9.051 | 12.04 | extracted_data/November_2024/10.1101_2024.11.17.623997_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.20.623956_v1 | 10.1101/2024.11.20.623956 | Histone H3 N-terminal recognition by the PHD finger of PHRF1 is required for proper DNA damage response | v1 | 2024-11-20 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf666 | 2025-07-08 | 34 | 7.776 | 16.9 | extracted_data/November_2024/10.1101_2024.11.20.623956_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.21.623953_v2 | 10.1101/2024.11.21.623953 | Mechanistic basis for protein conjugation in a diverged bacterial ubiquitination pathway | v2 | 2024-11-21 | Biochemistry | Nature Structural & Molecular Biology | 10.1038/s41594-025-01696-1 | 2026-01 | 48 | 6.187 | 6.42 | extracted_data/November_2024/10.1101_2024.11.21.623953_v2.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.21.624570_v1 | 10.1101/2024.11.21.624570 | Switchable client specificity in a dual functional chaperone coordinates light harvesting complex biogenesis | v1 | 2024-11-21 | Biochemistry | Science Advances | 10.1126/sciadv.adu5791 | 2025-06-13 | 79 | 4.324 | 12.06 | extracted_data/November_2024/10.1101_2024.11.21.624570_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.21.624772_v1 | 10.1101/2024.11.21.624772 | Structural insights into cholesterol sensing by the LYCHOS-mTORC1 pathway | v1 | 2024-11-21 | Biochemistry | Nature Communications | 10.1038/s41467-025-61966-w | 2025-07-23 | 71 | 4.761 | 14.63 | extracted_data/November_2024/10.1101_2024.11.21.624772_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.22.624703_v1 | 10.1101/2024.11.22.624703 | Conformational plasticity across phylogenetic clusters of RND multidrug efflux pumps and its impact on substrate specificity | v1 | 2024-11-22 | Biochemistry | Nature Communications | 10.1038/s41467-025-66751-3 | 2025-11-26 | 71 | 4.761 | 14.63 | extracted_data/November_2024/10.1101_2024.11.22.624703_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.22.624879_v1 | 10.1101/2024.11.22.624879 | 14-3-3 binding maintains the Parkinson’s associated kinase LRRK2 in an inactive state | v1 | 2024-11-22 | Biochemistry | Nature Communications | 10.1038/s41467-025-62337-1 | 2025-08-05 | 71 | 4.761 | 14.63 | extracted_data/November_2024/10.1101_2024.11.22.624879_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.25.625123_v1 | 10.1101/2024.11.25.625123 | Structure and mechanism of the RalGAP tumor suppressor complex | v1 | 2024-11-25 | Biochemistry | Nature Communications | 10.1038/s41467-025-61743-9 | 2025-07-30 | 71 | 4.761 | 14.63 | extracted_data/November_2024/10.1101_2024.11.25.625123_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.25.625307_v1 | 10.1101/2024.11.25.625307 | Visualization of a multi-turnover Cas9 after product release | v1 | 2024-11-25 | Biochemistry | Nature Communications | 10.1038/s41467-025-60668-7 | 2025-07-01 | 71 | 4.761 | 14.63 | extracted_data/November_2024/10.1101_2024.11.25.625307_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.26.625192_v1 | 10.1101/2024.11.26.625192 | Allosteric activation of the SPRTN protease by ubiquitin maintains genome stability | v1 | 2024-11-26 | Biochemistry | Nature Communications | 10.1038/s41467-025-61224-z | 2025-07-21 | 71 | 4.761 | 14.63 | extracted_data/November_2024/10.1101_2024.11.26.625192_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.26.625361_v1 | 10.1101/2024.11.26.625361 | The dual ubiquitin binding mode of SPRTN secures rapid spatiotemporal proteolysis of DNA-protein crosslinks | v1 | 2024-11-26 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf638 | 2025-07-08 | 34 | 7.776 | 16.9 | extracted_data/November_2024/10.1101_2024.11.26.625361_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.26.625528_v2 | 10.1101/2024.11.26.625528 | Stereoselectivity of Aminoacyl-RNA Loop-closing Ligation | v2 | 2024-11-26 | Biochemistry | Journal of the American Chemical Society | 10.1021/jacs.4c16905 | 2025-06-11 | 55 | 5.554 | 15.01 | extracted_data/November_2024/10.1101_2024.11.26.625528_v2.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.27.625627_v1 | 10.1101/2024.11.27.625627 | Gut microbiota-derived GlcNAc-MurNAc is a TLR4 agonist that protects the host gut | v1 | 2024-11-27 | Biochemistry | Nature Communications | 10.1038/s41467-025-60678-5 | 2025-07-01 | 71 | 4.761 | 14.63 | extracted_data/November_2024/10.1101_2024.11.27.625627_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.11.29.625835_v1 | 10.1101/2024.11.29.625835 | Cryo-EM structures of the MnmE-MnmG complex reveal large conformational changes and provide new insights into the mechanism of tRNA modification | v1 | 2024-11-29 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf824 | 2025-08-27 | 34 | 7.776 | 16.9 | extracted_data/December_2024/10.1101_2024.11.29.625835_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.01.626249_v1 | 10.1101/2024.12.01.626249 | G-quadruplex topologies determine the functional outcome of guanine-rich bioactive oligonucleotides | v1 | 2024-12-01 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf590 | 2025-06-20 | 34 | 7.776 | 16.9 | extracted_data/December_2024/10.1101_2024.12.01.626249_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.03.626601_v1 | 10.1101/2024.12.03.626601 | Harnessing the FBXW7 somatic mutant R465C for targeted protein degradation | v1 | 2024-12-03 | Biochemistry | Journal of the American Chemical Society | 10.1021/jacs.4c17331 | 2025-02-19 | 55 | 5.554 | 15.01 | extracted_data/December_2024/10.1101_2024.12.03.626601_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.07.627348_v1 | 10.1101/2024.12.07.627348 | Loss-of-function coding variants in the Ras of Complex Proteins/GTPase domain of Leucine Rich Repeat Kinase 2 | v1 | 2024-12-07 | Biochemistry | Protein Science | 10.1002/pro.70190 | 2025-07 | 73 | 4.657 | 6.35 | extracted_data/December_2024/10.1101_2024.12.07.627348_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.08.627421_v2 | 10.1101/2024.12.08.627421 | Atom-economic enantioselective photoenzymatic radical hydroalkylation via single-electron oxidation of carbanions | v2 | 2024-12-08 | Biochemistry | Nature Catalysis | 10.1038/s41929-025-01434-2 | 2025-10-31 | 12 | 14.132 | 25.3 | extracted_data/October_2025/10.1101_2024.12.08.627421_v2.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.11.627969_v1 | 10.1101/2024.12.11.627969 | Calmodulin binding is required for calcium mediated TRPA1 desensitization | v1 | 2024-12-11 | Biochemistry | Nature Communications | 10.1038/s41467-025-63767-7 | 2025-09-30 | 71 | 4.761 | 14.63 | extracted_data/December_2024/10.1101_2024.12.11.627969_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.12.626759_v1 | 10.1101/2024.12.12.626759 | H2B.W2, a Spermatocytes-specific Histone Variant, disrupts nucleosome stability and reduces chromatin compaction | v1 | 2024-12-12 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf825 | 2025-08-27 | 34 | 7.776 | 16.9 | extracted_data/December_2024/10.1101_2024.12.12.626759_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.13.628212_v1 | 10.1101/2024.12.13.628212 | Leucine Aminopeptidase LyLAP enables lysosomal degradation of membrane proteins | v1 | 2024-12-13 | Biochemistry | Science | 10.1126/science.adq8331 | 2025-03-28 | 19 | 10.416 | 15.26 | extracted_data/December_2024/10.1101_2024.12.13.628212_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.13.628308_v1 | 10.1101/2024.12.13.628308 | Enzymatic epimerization of monoterpene indole alkaloids in Kratom | v1 | 2024-12-13 | Biochemistry | Nature Chemical Biology | 10.1038/s41589-025-01970-9 | 2026-02 | 56 | 5.521 | 7.32 | extracted_data/December_2024/10.1101_2024.12.13.628308_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.14.628514_v5 | 10.1101/2024.12.14.628514 | Structurally distinct manganese-sensing riboswitch aptamers regulate different expression platform architectures | v5 | 2024-12-14 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf477 | 2025-06-06 | 34 | 7.776 | 16.9 | extracted_data/May_2025/10.1101_2024.12.14.628514_v5.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.17.628619_v1 | 10.1101/2024.12.17.628619 | Mechanism of D-type cyclins recognition by the AMBRA1 E3 ligase receptor | v1 | 2024-12-17 | Biochemistry | Science Advances | 10.1126/sciadv.adu8708 | 2025-05-23 | 79 | 4.324 | 12.06 | extracted_data/December_2024/10.1101_2024.12.17.628619_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.17.628942_v1 | 10.1101/2024.12.17.628942 | Spatially barcoding biochemical reactions using DNA nanostructures unveil a major contact mechanism in proximity labeling | v1 | 2024-12-17 | Biochemistry | Nature Chemical Biology | 10.1038/s41589-025-02086-w | 2025-12-24 | 56 | 5.521 | 7.32 | extracted_data/December_2024/10.1101_2024.12.17.628942_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.18.629151_v1 | 10.1101/2024.12.18.629151 | Scavenger receptor CD163 multimerises to allow uptake of diverse ligands | v1 | 2024-12-18 | Biochemistry | Nature Communications | 10.1038/s41467-025-62054-9 | 2025-07-18 | 71 | 4.761 | 14.63 | extracted_data/January_2025/10.1101_2024.12.18.629151_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.18.629163_v1 | 10.1101/2024.12.18.629163 | Architecture of the UBR4 complex, a giant E4 ligase central to eukaryotic protein quality control | v1 | 2024-12-18 | Biochemistry | Science | 10.1126/science.adv9309 | 2025-08-28 | 19 | 10.416 | 15.26 | extracted_data/December_2024/10.1101_2024.12.18.629163_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.19.629450_v2 | 10.1101/2024.12.19.629450 | Hydralazine inhibits cysteamine dioxygenase to treat preeclampsia and senesce glioblastoma | v2 | 2024-12-19 | Biochemistry | Science Advances | 10.1126/sciadv.adx7687 | 2025-10-17 | 79 | 4.324 | 12.06 | extracted_data/January_2025/10.1101_2024.12.19.629450_v2.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.28.630583_v1 | 10.1101/2024.12.28.630583 | Chromosome end protection by RAP1-mediated inhibition of DNA-PK | v1 | 2024-12-28 | Biochemistry | Nature | 10.1038/s41586-025-08896-1 | 2025-06-26 | 7 | 18.288 | 18.47 | extracted_data/December_2024/10.1101_2024.12.28.630583_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.30.628871_v1 | 10.1101/2024.12.30.628871 | YnaI exemplifies the diversity of structural gating mechanisms in mechanosensitive channels of small conductance | v1 | 2024-12-30 | Biochemistry | Nature Communications | 10.1038/s41467-025-63253-0 | 2025-08-23 | 71 | 4.761 | 14.63 | extracted_data/December_2024/10.1101_2024.12.30.628871_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.30.630499_v1 | 10.1101/2024.12.30.630499 | Structural basis of phosphate export by human XPR1 | v1 | 2024-12-30 | Biochemistry | Cell Research | 10.1038/s41422-025-01081-z | 2025-02-28 | 27 | 8.74 | 9.06 | extracted_data/December_2024/10.1101_2024.12.30.630499_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.30.630615_v2 | 10.1101/2024.12.30.630615 | A nucleotide code governs Lis1’s ability to relieve dynein autoinhibition | v2 | 2024-12-30 | Biochemistry | Nature Chemical Biology | 10.1038/s41589-025-02096-8 | 2026-04 | 56 | 5.521 | 7.32 | extracted_data/January_2025/10.1101_2024.12.30.630615_v2.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.30.630784_v1 | 10.1101/2024.12.30.630784 | Structural basis for ring-opening fluorescence by the RhoBAST RNA aptamer | v1 | 2024-12-30 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf555 | 2025-06-20 | 34 | 7.776 | 16.9 | extracted_data/December_2024/10.1101_2024.12.30.630784_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.31.630877_v1 | 10.1101/2024.12.31.630877 | A third type of PETase from the marine Halopseudomonas lineage | v1 | 2024-12-31 | Biochemistry | Protein Science | 10.1002/pro.70305 | 2025-10 | 73 | 4.657 | 6.35 | extracted_data/January_2025/10.1101_2024.12.31.630877_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2024.12.31.630957_v1 | 10.1101/2024.12.31.630957 | Identification and characterization of shifted G•U wobble pairs resulting from alternative protonation of RNA | v1 | 2024-12-31 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf575 | 2025-07-19 | 34 | 7.776 | 16.9 | extracted_data/January_2025/10.1101_2024.12.31.630957_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.02.631033_v1 | 10.1101/2025.01.02.631033 | Ether Rhodamines with Enhanced Hydrophilicity, Fluorogenicity, and Brightness for Super-Resolution Imaging | v1 | 2025-01-02 | Biochemistry | Journal of the American Chemical Society | 10.1021/jacs.5c08833 | 2025-06-25 | 55 | 5.554 | 15.01 | extracted_data/January_2025/10.1101_2025.01.02.631033_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.02.631069_v1 | 10.1101/2025.01.02.631069 | Biochemical Profiling and Structural Basis of ADAR1-Mediated RNA Editing | v1 | 2025-01-02 | Biochemistry | Molecular Cell | 10.1016/j.molcel.2025.02.017 | 2025-04 | 26 | 9.051 | 12.04 | extracted_data/January_2025/10.1101_2025.01.02.631069_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.03.631205_v1 | 10.1101/2025.01.03.631205 | Crystal structure of MutYX: A novel clusterless adenine DNA glycosylase with a distinct C-terminal domain and 8-Oxoguanine recognition sphere | v1 | 2025-01-03 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf1127 | 2025-11-13 | 34 | 7.776 | 16.9 | extracted_data/January_2025/10.1101_2025.01.03.631205_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.04.631262_v1 | 10.1101/2025.01.04.631262 | RNA denaturation underlies circular RNA separation | v1 | 2025-01-04 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf1160 | 2025-11-13 | 34 | 7.776 | 16.9 | extracted_data/January_2025/10.1101_2025.01.04.631262_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.04.631292_v4 | 10.1101/2025.01.04.631292 | Allosteric Residue Dynamics in Insulin: Temperature Induces Shift from Dihexamer to Hexamer Collective Motion | v4 | 2025-01-04 | Biochemistry | Protein Science | 10.1002/pro.70245 | 2025-09 | 73 | 4.657 | 6.35 | extracted_data/February_2025/10.1101_2025.01.04.631292_v4.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.05.631374_v1 | 10.1101/2025.01.05.631374 | Cycling Molecular Assemblies for Selective Cancer Cell Golgi Disruption | v1 | 2025-01-05 | Biochemistry | Nature Communications | 10.1038/s41467-026-68768-8 | 2026-01-28 | 71 | 4.761 | 14.63 | extracted_data/January_2025/10.1101_2025.01.05.631374_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.06.630955_v2 | 10.1101/2025.01.06.630955 | Butyrolactol A potentiates caspofungin efficacy against resistant fungi via phospholipid flippase inhibition | v2 | 2025-01-06 | Biochemistry | Cell | 10.1016/j.cell.2025.11.036 | 2026-01 | 3 | 22.612 | 30.22 | extracted_data/July_2025/10.1101_2025.01.06.630955_v2.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.07.631695_v4 | 10.1101/2025.01.07.631695 | Ancient gene clusters govern the initiation of monoterpenoid indole alkaloid biosynthesis and C3 stereochemistry inversion | v4 | 2025-01-07 | Biochemistry | Nature Communications | 10.1038/s41467-025-65543-z | 2025-11-25 | 71 | 4.761 | 14.63 | extracted_data/September_2025/10.1101_2025.01.07.631695_v4.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.07.631748_v1 | 10.1101/2025.01.07.631748 | Strategic Modulation of Polarity and Viscosity Sensitivity of Bimane Molecular Rotor-Based Fluorophores for Imaging α-Synuclein | v1 | 2025-01-07 | Biochemistry | Journal of the American Chemical Society | 10.1021/jacs.4c17933 | 2025-05-07 | 55 | 5.554 | 15.01 | extracted_data/January_2025/10.1101_2025.01.07.631748_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.09.632186_v1 | 10.1101/2025.01.09.632186 | Molecular and structural basis of a subfamily of PrfH rescuing both the damaged and intact ribosomes stalled in translation | v1 | 2025-01-09 | Biochemistry | Science Advances | 10.1126/sciadv.aea7378 | 2026-01-23 | 79 | 4.324 | 12.06 | extracted_data/January_2025/10.1101_2025.01.09.632186_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.09.632187_v1 | 10.1101/2025.01.09.632187 | Leading and lagging strand abasic sites differentially affect vertebrate replisome progression but involve analogous bypass mechanisms | v1 | 2025-01-09 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf975 | 2025-09-23 | 34 | 7.776 | 16.9 | extracted_data/January_2025/10.1101_2025.01.09.632187_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.10.632481_v1 | 10.1101/2025.01.10.632481 | The bile acid-sensitive ion channel is gated by Ca2+-dependent conformational changes in the transmembrane domain | v1 | 2025-01-10 | Biochemistry | Nature Communications | 10.1038/s41467-025-62038-9 | 2025-07-22 | 71 | 4.761 | 14.63 | extracted_data/January_2025/10.1101_2025.01.10.632481_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.11.632532_v1 | 10.1101/2025.01.11.632532 | A novel broad-spectrum antibiotic targets multiple-drug-resistant bacteria with dual binding targets and no detectable resistance | v1 | 2025-01-11 | Biochemistry | Nature Communications | 10.1038/s41467-025-62407-4 | 2025-07-31 | 71 | 4.761 | 14.63 | extracted_data/January_2025/10.1101_2025.01.11.632532_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.13.632710_v2 | 10.1101/2025.01.13.632710 | α-Synuclein aggregates inhibit ESCRT-III through sequestration and collateral degradation | v2 | 2025-01-13 | Biochemistry | Molecular Cell | 10.1016/j.molcel.2025.08.022 | 2025-09 | 26 | 9.051 | 12.04 | extracted_data/January_2025/10.1101_2025.01.13.632710_v2.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.13.632842_v1 | 10.1101/2025.01.13.632842 | A suite of pre-assembled, pET28b-based Golden Gate vectors for efficient protein engineering and expression | v1 | 2025-01-13 | Biochemistry | Protein Science | 10.1002/pro.70106 | 2025-04 | 73 | 4.657 | 6.35 | extracted_data/January_2025/10.1101_2025.01.13.632842_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.14.632894_v1 | 10.1101/2025.01.14.632894 | The oncogenic CCDC6-RET fusion product is a dual ATP and ADP-dependent kinase that functions via cis-phosphorylation | v1 | 2025-01-14 | Biochemistry | Nature Communications | 10.1038/s41467-026-69833-y | 2026-03-06 | 71 | 4.761 | 14.63 | extracted_data/January_2025/10.1101_2025.01.14.632894_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.14.633079_v2 | 10.1101/2025.01.14.633079 | Monitoring monomer-specific acyl-tRNA levels in cells with PARTI | v2 | 2025-01-14 | Biochemistry | Nucleic Acids Research | 10.1093/nar/gkaf327 | 2025-04-22 | 34 | 7.776 | 16.9 | extracted_data/January_2025/10.1101_2025.01.14.633079_v2.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.16.633180_v1 | 10.1101/2025.01.16.633180 | Mechanism of RPA phosphocode priming and tuning by Cdk1/Wee1 signaling circuit | v1 | 2025-01-16 | Biochemistry | Nature Communications | 10.1038/s41467-025-66794-6 | 2025-12-09 | 71 | 4.761 | 14.63 | extracted_data/January_2025/10.1101_2025.01.16.633180_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.17.633572_v1 | 10.1101/2025.01.17.633572 | The mycotoxin Beauvericin is an uncompetitive inhibitor of Cathepsin B | v1 | 2025-01-17 | Biochemistry | Protein Science | 10.1002/pro.70173 | 2025-06 | 73 | 4.657 | 6.35 | extracted_data/January_2025/10.1101_2025.01.17.633572_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.17.633603_v1 | 10.1101/2025.01.17.633603 | Conformational Dynamics and Membrane Insertion Mechanism of B4GALNT1 in Ganglioside Synthesis | v1 | 2025-01-17 | Biochemistry | Nature Communications | 10.1038/s41467-025-60593-9 | 2025-07-01 | 71 | 4.761 | 14.63 | extracted_data/January_2025/10.1101_2025.01.17.633603_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.21.633632_v4 | 10.1101/2025.01.21.633632 | Atom-level Machine Learning of Protein-Glycan Interactions and Cross-chiral Recognition in Glycobiology | v4 | 2025-01-21 | Biochemistry | Science Advances | 10.1126/sciadv.adx6373 | 2025-12-05 | 79 | 4.324 | 12.06 | extracted_data/March_2025/10.1101_2025.01.21.633632_v4.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.21.634006_v1 | 10.1101/2025.01.21.634006 | Peptide Design through Binding Interface Mimicry | v1 | 2025-01-21 | Biochemistry | Nature Biomedical Engineering | 10.1038/s41551-025-01507-4 | 2025-10-01 | 21 | 10.105 | 21.44 | extracted_data/January_2025/10.1101_2025.01.21.634006_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.22.634254_v1 | 10.1101/2025.01.22.634254 | A Cysteine-Less and Ultra-Fast Split Intein Rationally Engineered from Being Aggregation-Prone to Highly Efficient in Protein trans-Splicing | v1 | 2025-01-22 | Biochemistry | Nature Communications | 10.1038/s41467-025-57596-x | 2025-03-19 | 71 | 4.761 | 14.63 | extracted_data/January_2025/10.1101_2025.01.22.634254_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.23.634628_v2 | 10.1101/2025.01.23.634628 | Elucidation of the biosynthetic pathway of reserpine | v2 | 2025-01-23 | Biochemistry | Journal of the American Chemical Society | 10.1021/jacs.5c02863 | 2025-07-23 | 55 | 5.554 | 15.01 | extracted_data/January_2025/10.1101_2025.01.23.634628_v2.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.24.634655_v3 | 10.1101/2025.01.24.634655 | ST-FFPE-mIF: Integrating Spatial Transcriptomics and Multiplex Immunofluorescence in Formalin-Fixed Paraffin-Embedded Tissues Using Stereo-seq | v3 | 2025-01-24 | Biochemistry | Genome Biology | 10.1186/s13059-025-03900-3 | 2025-12-16 | 53 | 5.71 | 9.04 | extracted_data/April_2025/10.1101_2025.01.24.634655_v3.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.28.635216_v1 | 10.1101/2025.01.28.635216 | Collective biosynthesis of plant spirooxindole alkaloids through enzyme discovery and engineering | v1 | 2025-01-28 | Biochemistry | Journal of the American Chemical Society | 10.1021/jacs.5c02990 | 2025-06-25 | 55 | 5.554 | 15.01 | extracted_data/January_2025/10.1101_2025.01.28.635216_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.28.635220_v1 | 10.1101/2025.01.28.635220 | Structural Basis for OAS2 Regulation and its Antiviral Function | v1 | 2025-01-28 | Biochemistry | Molecular Cell | 10.1016/j.molcel.2025.05.001 | 2025-06 | 26 | 9.051 | 12.04 | extracted_data/January_2025/10.1101_2025.01.28.635220_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.28.635287_v1 | 10.1101/2025.01.28.635287 | Chemical Synthesis of Oligosaccharides Derived from Streptococcus pneumoniae Serotype 35B and D to Investigate Binding of Complement and Serum Factors | v1 | 2025-01-28 | Biochemistry | Journal of the American Chemical Society | 10.1021/jacs.5c12005 | 2025-08-20 | 55 | 5.554 | 15.01 | extracted_data/January_2025/10.1101_2025.01.28.635287_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.29.634835_v1 | 10.1101/2025.01.29.634835 | Structural basis of undecaprenyl phosphate glycosylation leading to polymyxin resistance in Gram-negative bacteria | v1 | 2025-01-29 | Biochemistry | Nature Communications | 10.1038/s41467-025-65968-6 | 2025-12-09 | 71 | 4.761 | 14.63 | extracted_data/February_2025/10.1101_2025.01.29.634835_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.01.31.635883_v1 | 10.1101/2025.01.31.635883 | Proteomic Ligandability Maps of Phosphorus(V) Stereoprobes Identify Covalent TLCD1 Inhibitors | v1 | 2025-01-31 | Biochemistry | Journal of the American Chemical Society | 10.1021/jacs.5c01944 | 2025-05-07 | 55 | 5.554 | 15.01 | extracted_data/February_2025/10.1101_2025.01.31.635883_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.02.04.636406_v1 | 10.1101/2025.02.04.636406 | Using a stable protein scaffold to display peptides that bind to alpha-synuclein fibrils | v1 | 2025-02-04 | Biochemistry | Protein Science | 10.1002/pro.70150 | 2025-06 | 73 | 4.657 | 6.35 | extracted_data/February_2025/10.1101_2025.02.04.636406_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.02.07.636353_v3 | 10.1101/2025.02.07.636353 | Elucidation and de novo Reconstitution of Glyceollin Biosynthesis | v3 | 2025-02-07 | Biochemistry | Molecular Plant | 10.1016/j.molp.2025.04.003 | 2025-05 | 57 | 5.519 | 13.75 | extracted_data/March_2025/10.1101_2025.02.07.636353_v3.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.02.08.637243_v2 | 10.1101/2025.02.08.637243 | Flavoaffinins, elusive cellulose-binding natural products from an anaerobic bacterium | v2 | 2025-02-08 | Biochemistry | Journal of the American Chemical Society | 10.1021/jacs.5c15360 | 2026-01-28 | 55 | 5.554 | 15.01 | extracted_data/November_2025/10.1101_2025.02.08.637243_v2.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.02.09.637231_v1 | 10.1101/2025.02.09.637231 | Molecular basis of vitamin K-dependent protein γ-glutamyl carboxylation | v1 | 2025-02-09 | Biochemistry | Cell Research | 10.1038/s41422-025-01185-6 | 2025-09-29 | 27 | 8.74 | 9.06 | extracted_data/February_2025/10.1101_2025.02.09.637231_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.02.20.638879_v1 | 10.1101/2025.02.20.638879 | Chemical inhibition of a bacterial immune system | v1 | 2025-02-20 | Biochemistry | Cell Host & Microbe | 10.1016/j.chom.2026.01.003 | 2026-02 | 38 | 7.067 | 11.68 | extracted_data/February_2025/10.1101_2025.02.20.638879_v1.xml | top100_bgm_multi_journals.csv |
biochemistry | 10.1101_2025.02.21.639315_v1 | 10.1101/2025.02.21.639315 | Distal mutations enhance catalysis in designed enzymes by facilitating substrate binding and product release | v1 | 2025-02-21 | Biochemistry | Nature Communications | 10.1038/s41467-025-63802-7 | 2025-09-30 | 71 | 4.761 | 14.63 | extracted_data/February_2025/10.1101_2025.02.21.639315_v1.xml | top100_bgm_multi_journals.csv |
End of preview.
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Journal-recommendation benchmark data
Data used in the PASS study: bioRxiv/medRxiv preprints paired with the journal they were later published in, the candidate-journal target sets, the ablation cohort, and journal-level SCImago metrics. Ground-truth publication status was recovered from the bioRxiv/medRxiv APIs + CrossRef.
Files
Benchmark data (2,184 preprints) — evaluation_papers.csv
The papers used for evaluation: newest version preprints whose v1 was posted on/after 2024-10-01, that were subsequently published, in a journal within the track's top-100 candidate set. One row per preprint. We note here that filtering from papers_metadata_pub.csv yields 2,199 papers, but 15 papers were dropped due to producing API error during evaluation, which yields the final 2,184 entries.
| column | description |
|---|---|
eval_track |
one of the 16 evaluation tracks (e.g. genomics, neuro_200) |
paper_id |
{DOI_with_'/'→'_'}_v{N} |
doi, title, version |
preprint identifiers |
date_received |
v1 posting date (YYYY-MM-DD) |
category |
bioRxiv/medRxiv subject category |
published_journal |
ground-truth label — journal of the peer-reviewed version |
published_doi, published_date |
the published article |
sjr_rank, sjr, cit_per_doc_2yr |
SCImago metrics of the published journal |
xml_path |
path to the preprint's JATS XML |
candidate_journal_set |
which file in candidate_journals/ is this track's target list |
Full preprint pool (119,645 versions) — papers_metadata_pub.csv
The complete metadata + publication-status table the benchmark was filtered from (all downloaded bioRxiv/medRxiv preprint versions, published or not).
Columns: paper_id, source, doi, version, title, abstract, category, keywords, authors, date_received, published, published_doi, published_journal, published_date.
Recommendation target sets (top-100 each) — candidate_journals/
The five curated candidate-journal lists used across the 16 tracks, selected from SCImago by area and ranked by SJR. Columns: rank, journal, sjr, cit_per_doc_2yr, h_index, quartile, categories, areas, issn, publisher, country, open_access.
top100_bgm_multi_journals.csv— Biochemistry, Genetics & Molecular Biology (BGM) + Multidisciplinarytop100_med_multi_journals.csv— Medicine + Multidisciplinarytop100_neuro_multi_journals.csv— Neuroscience + Multidisciplinarytop100_ag_bio_multi_journals.csv— Agricultural & Biological Sciences + Multidisciplinarytop100_imm_micro_multi_no_elife_journals.csv— Immunology & Microbiology + Multidisciplinary
Ablation cohort (320 preprints) — ablation_sample_320.csv
The balanced sample used for the input-component ablation: 20 papers × 16 categories. Columns: paper_id, category, published_journal.
Journal-level metrics — scimago_2024_journal_metrics.csv
The raw SCImago Journal Rank 2024 (;-delimited), which is the source of the journal-level features (SJR, quartile, H-index, citations/doc, categories, areas, ISSN, publisher, country, open-access) used to build the candidate sets. This file was downloaded from SCImago website.
Citation. SCImago, (n.d.). SJR — SCImago Journal & Country Rank [Portal]. Retrieved February 1, 2026, from https://www.scimagojr.com
Reuse / redistribution of this SCImago-derived data must follow the SCImago Journal & Country Rank policy (https://www.scimagojr.com).
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