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The dataset generation failed
Error code: DatasetGenerationError
Exception: ChunkedEncodingError
Message: ('Connection broken: IncompleteRead(3717746 bytes read, 454593 more expected)', IncompleteRead(3717746 bytes read, 454593 more expected))
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/urllib3/response.py", line 779, in _error_catcher
yield
File "/usr/local/lib/python3.12/site-packages/urllib3/response.py", line 925, in _raw_read
raise IncompleteRead(self._fp_bytes_read, self.length_remaining)
urllib3.exceptions.IncompleteRead: IncompleteRead(3717746 bytes read, 454593 more expected)
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/requests/models.py", line 820, in generate
yield from self.raw.stream(chunk_size, decode_content=True)
File "/usr/local/lib/python3.12/site-packages/urllib3/response.py", line 1091, in stream
data = self.read(amt=amt, decode_content=decode_content)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/urllib3/response.py", line 1008, in read
data = self._raw_read(amt)
^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/urllib3/response.py", line 903, in _raw_read
with self._error_catcher():
^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/contextlib.py", line 158, in __exit__
self.gen.throw(value)
File "/usr/local/lib/python3.12/site-packages/urllib3/response.py", line 803, in _error_catcher
raise ProtocolError(arg, e) from e
urllib3.exceptions.ProtocolError: ('Connection broken: IncompleteRead(3717746 bytes read, 454593 more expected)', IncompleteRead(3717746 bytes read, 454593 more expected))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1779, in _prepare_split_single
for key, table in generator:
^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 609, in wrapped
for item in generator(*args, **kwargs):
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/hdf5/hdf5.py", line 80, in _generate_tables
num_rows = _check_dataset_lengths(h5, self.info.features)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/hdf5/hdf5.py", line 349, in _check_dataset_lengths
first_path = _first_dataset(h5_obj, features)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/hdf5/hdf5.py", line 337, in _first_dataset
for path, dset in h5_obj.items():
^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/h5py/_hl/base.py", line 437, in __iter__
yield (key, self._mapping.get(key))
^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/h5py/_hl/group.py", line 403, in get
return self[name]
~~~~^^^^^^
File "h5py/_objects.pyx", line 56, in h5py._objects.with_phil.wrapper
File "h5py/_objects.pyx", line 57, in h5py._objects.with_phil.wrapper
File "/usr/local/lib/python3.12/site-packages/h5py/_hl/group.py", line 360, in __getitem__
oid = h5o.open(self.id, self._e(name), lapl=self._lapl)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "h5py/_objects.pyx", line 56, in h5py._objects.with_phil.wrapper
File "h5py/_objects.pyx", line 57, in h5py._objects.with_phil.wrapper
File "h5py/h5o.pyx", line 257, in h5py.h5o.open
File "h5py/h5fd.pyx", line 162, in h5py.h5fd.H5FD_fileobj_read
File "/usr/local/lib/python3.12/site-packages/fsspec/spec.py", line 1856, in readinto
data = self.read(out.nbytes)
^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/utils/file_utils.py", line 844, in read_with_retries
out = read(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 728, in track_read
out = f_read(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/huggingface_hub/hf_file_system.py", line 1015, in read
return super().read(length)
^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/fsspec/spec.py", line 1846, in read
out = self.cache._fetch(self.loc, self.loc + length)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/fsspec/caching.py", line 189, in _fetch
self.cache = self.fetcher(start, end) # new block replaces old
^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/huggingface_hub/hf_file_system.py", line 969, in _fetch_range
r = http_backoff(
^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/huggingface_hub/utils/_http.py", line 310, in http_backoff
response = session.request(method=method, url=url, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/requests/sessions.py", line 589, in request
resp = self.send(prep, **send_kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/requests/sessions.py", line 724, in send
history = [resp for resp in gen]
^^^
File "/usr/local/lib/python3.12/site-packages/requests/sessions.py", line 265, in resolve_redirects
resp = self.send(
^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/requests/sessions.py", line 746, in send
r.content
File "/usr/local/lib/python3.12/site-packages/requests/models.py", line 902, in content
self._content = b"".join(self.iter_content(CONTENT_CHUNK_SIZE)) or b""
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/requests/models.py", line 822, in generate
raise ChunkedEncodingError(e)
requests.exceptions.ChunkedEncodingError: ('Connection broken: IncompleteRead(3717746 bytes read, 454593 more expected)', IncompleteRead(3717746 bytes read, 454593 more expected))
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1342, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 907, in stream_convert_to_parquet
builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1646, in _prepare_split
for job_id, done, content in self._prepare_split_single(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1832, in _prepare_split_single
raise DatasetGenerationError("An error occurred while generating the dataset") from e
datasets.exceptions.DatasetGenerationError: An error occurred while generating the datasetNeed help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
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End of preview.
Allen V1 Direct Raw Alignment Reproduction Assets
This dataset repo stores data assets used by
https://github.com/aod321/allen-v1-direct-raw-alignment.
Contents:
brainsets_processed/allen_visual_coding_ophys_2016/*.h5: POYO/Brainsets preprocessed H5 files derived from Allen Visual Coding Ophys 2016.natural_movie_one_frames.npy: Natural Movie One frame tensor used as the V1 visual input.GLIF_network/: Billeh-pristine/Chen-style GLIF V1 network assets needed by the JAX V1 simulator.
This repo intentionally does not contain warm-started or final V1 checkpoints. The reproduction code trains those from the data assets.
HF repo id: inz/allen-v1-direct-raw-alignment-assets
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