gabrielaltay commited on
Commit
efb2d6d
·
verified ·
1 Parent(s): 6fcce6e

Rename per-project files train.parquet → data.parquet

Browse files
README.md CHANGED
@@ -12,15 +12,15 @@ configs:
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  - config_name: TCGA-CHOL
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  data_files:
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  - split: train
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- path: TCGA-CHOL/*.parquet
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  - config_name: TCGA-DLBC
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  data_files:
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  - split: train
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- path: TCGA-DLBC/*.parquet
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  - config_name: TCGA-LUAD
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  data_files:
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  - split: train
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- path: TCGA-LUAD/*.parquet
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  ---
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  # TCGA Patients (Open Access)
@@ -30,7 +30,7 @@ National Cancer Institute (NCI) Genomic Data Commons (GDC). One HuggingFace
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  (HF) subset per TCGA project; one row per patient.
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  - **Projects included:** `TCGA-CHOL`, `TCGA-DLBC`, `TCGA-LUAD`
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- - **Generated:** 2026-05-04 23:29:28 UTC
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  - **Source:** GDC `/cases` endpoint, open-access tier only.
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  - **Schema:** derived from the [GDC Data Dictionary][gdc-dict]; the live
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  dictionary the GDC was serving when the data was fetched is hashed into
@@ -92,7 +92,7 @@ mutations-by-gene, expression-by-gene, longitudinal timeline).
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  import pyarrow.parquet as pq
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  from tcga2hf.models import TcgaHfPatient
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- t = pq.read_table("TCGA-CHOL/train.parquet")
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  patients = [TcgaHfPatient.model_validate(r) for r in t.to_pylist()]
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  ```
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  - config_name: TCGA-CHOL
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  data_files:
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  - split: train
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+ path: TCGA-CHOL/data.parquet
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  - config_name: TCGA-DLBC
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  data_files:
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  - split: train
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+ path: TCGA-DLBC/data.parquet
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  - config_name: TCGA-LUAD
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  data_files:
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  - split: train
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+ path: TCGA-LUAD/data.parquet
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  ---
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  # TCGA Patients (Open Access)
 
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  (HF) subset per TCGA project; one row per patient.
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  - **Projects included:** `TCGA-CHOL`, `TCGA-DLBC`, `TCGA-LUAD`
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+ - **Generated:** 2026-05-05 03:50:12 UTC
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  - **Source:** GDC `/cases` endpoint, open-access tier only.
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  - **Schema:** derived from the [GDC Data Dictionary][gdc-dict]; the live
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  dictionary the GDC was serving when the data was fetched is hashed into
 
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  import pyarrow.parquet as pq
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  from tcga2hf.models import TcgaHfPatient
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+ t = pq.read_table("TCGA-CHOL/data.parquet")
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  patients = [TcgaHfPatient.model_validate(r) for r in t.to_pylist()]
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  ```
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TCGA-CHOL/{train.parquet → data.parquet} RENAMED
File without changes
TCGA-DLBC/{train.parquet → data.parquet} RENAMED
File without changes
TCGA-LUAD/{train.parquet → data.parquet} RENAMED
File without changes