Datasets:
Rename per-project files train.parquet → data.parquet
Browse files
README.md
CHANGED
|
@@ -12,15 +12,15 @@ configs:
|
|
| 12 |
- config_name: TCGA-CHOL
|
| 13 |
data_files:
|
| 14 |
- split: train
|
| 15 |
-
path: TCGA-CHOL/
|
| 16 |
- config_name: TCGA-DLBC
|
| 17 |
data_files:
|
| 18 |
- split: train
|
| 19 |
-
path: TCGA-DLBC/
|
| 20 |
- config_name: TCGA-LUAD
|
| 21 |
data_files:
|
| 22 |
- split: train
|
| 23 |
-
path: TCGA-LUAD/
|
| 24 |
---
|
| 25 |
|
| 26 |
# TCGA Patients (Open Access)
|
|
@@ -30,7 +30,7 @@ National Cancer Institute (NCI) Genomic Data Commons (GDC). One HuggingFace
|
|
| 30 |
(HF) subset per TCGA project; one row per patient.
|
| 31 |
|
| 32 |
- **Projects included:** `TCGA-CHOL`, `TCGA-DLBC`, `TCGA-LUAD`
|
| 33 |
-
- **Generated:** 2026-05-
|
| 34 |
- **Source:** GDC `/cases` endpoint, open-access tier only.
|
| 35 |
- **Schema:** derived from the [GDC Data Dictionary][gdc-dict]; the live
|
| 36 |
dictionary the GDC was serving when the data was fetched is hashed into
|
|
@@ -92,7 +92,7 @@ mutations-by-gene, expression-by-gene, longitudinal timeline).
|
|
| 92 |
import pyarrow.parquet as pq
|
| 93 |
from tcga2hf.models import TcgaHfPatient
|
| 94 |
|
| 95 |
-
t = pq.read_table("TCGA-CHOL/
|
| 96 |
patients = [TcgaHfPatient.model_validate(r) for r in t.to_pylist()]
|
| 97 |
```
|
| 98 |
|
|
|
|
| 12 |
- config_name: TCGA-CHOL
|
| 13 |
data_files:
|
| 14 |
- split: train
|
| 15 |
+
path: TCGA-CHOL/data.parquet
|
| 16 |
- config_name: TCGA-DLBC
|
| 17 |
data_files:
|
| 18 |
- split: train
|
| 19 |
+
path: TCGA-DLBC/data.parquet
|
| 20 |
- config_name: TCGA-LUAD
|
| 21 |
data_files:
|
| 22 |
- split: train
|
| 23 |
+
path: TCGA-LUAD/data.parquet
|
| 24 |
---
|
| 25 |
|
| 26 |
# TCGA Patients (Open Access)
|
|
|
|
| 30 |
(HF) subset per TCGA project; one row per patient.
|
| 31 |
|
| 32 |
- **Projects included:** `TCGA-CHOL`, `TCGA-DLBC`, `TCGA-LUAD`
|
| 33 |
+
- **Generated:** 2026-05-05 03:50:12 UTC
|
| 34 |
- **Source:** GDC `/cases` endpoint, open-access tier only.
|
| 35 |
- **Schema:** derived from the [GDC Data Dictionary][gdc-dict]; the live
|
| 36 |
dictionary the GDC was serving when the data was fetched is hashed into
|
|
|
|
| 92 |
import pyarrow.parquet as pq
|
| 93 |
from tcga2hf.models import TcgaHfPatient
|
| 94 |
|
| 95 |
+
t = pq.read_table("TCGA-CHOL/data.parquet")
|
| 96 |
patients = [TcgaHfPatient.model_validate(r) for r in t.to_pylist()]
|
| 97 |
```
|
| 98 |
|
TCGA-CHOL/{train.parquet → data.parquet}
RENAMED
|
File without changes
|
TCGA-DLBC/{train.parquet → data.parquet}
RENAMED
|
File without changes
|
TCGA-LUAD/{train.parquet → data.parquet}
RENAMED
|
File without changes
|