Datasets:
drop unsupported TCGA library-prep claim; cite GDC pipeline harmonization quote instead
Browse files
README.md
CHANGED
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@@ -30,7 +30,7 @@ National Cancer Institute (NCI) Genomic Data Commons (GDC). One HuggingFace
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(HF) subset per TCGA project; one row per patient.
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- **Projects included:** `TCGA-CHOL`, `TCGA-DLBC`, `TCGA-LUAD`
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- **Generated:** 2026-05-04 23:
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- **Source:** GDC `/cases` endpoint, open-access tier only.
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- **Schema:** derived from the [GDC Data Dictionary][gdc-dict]; the live
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dictionary the GDC was serving when the data was fetched is hashed into
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@@ -77,8 +77,10 @@ tree:
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record has the STAR per-feature quality-control counts `N_unmapped`,
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`N_multimapping`, `N_noFeature`, `N_ambiguous` lifted from the source
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Tab-Separated Values (TSV) file onto the row as scalar fields. The
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`stranded_first` / `stranded_second` columns are dropped —
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## Loading
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(HF) subset per TCGA project; one row per patient.
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- **Projects included:** `TCGA-CHOL`, `TCGA-DLBC`, `TCGA-LUAD`
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+
- **Generated:** 2026-05-04 23:29:28 UTC
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- **Source:** GDC `/cases` endpoint, open-access tier only.
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- **Schema:** derived from the [GDC Data Dictionary][gdc-dict]; the live
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dictionary the GDC was serving when the data was fetched is hashed into
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record has the STAR per-feature quality-control counts `N_unmapped`,
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`N_multimapping`, `N_noFeature`, `N_ambiguous` lifted from the source
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Tab-Separated Values (TSV) file onto the row as scalar fields. The
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`stranded_first` / `stranded_second` columns are dropped — the GDC
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pipeline harmonizes by [treating all RNA-Seq reads as
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unstranded](https://docs.gdc.cancer.gov/Data/Bioinformatics_Pipelines/Expression_mRNA_Pipeline/),
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so `unstranded` is the canonical column.
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## Loading
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