task stringclasses 3
values | hash stringlengths 32 32 | benchmark_context__model_name stringclasses 1
value | benchmark_context__model_version stringclasses 1
value | benchmark_context__model_url stringclasses 1
value | benchmark_context__hyperparameters stringclasses 1
value | benchmark_context__grammar stringclasses 1
value | calculation_settings__geometry_method stringclasses 2
values | calculation_settings__hessian_method stringclasses 1
value | calculation_settings__electronic_structure_method stringclasses 1
value | calculation_settings__transport_method stringclasses 1
value | calculation_settings__upconversion_method stringclasses 1
value | calculation_settings__temperature float64 289 300 | calculation_settings__oracle_config stringclasses 3
values | molecular_junction__smiles stringlengths 49 226 | molecular_junction__encoding stringlengths 47 196 | molecular_junction__sa_score float64 2.82 4.5 | molecular_junction__hl_gap float64 | molecular_junction__oracle_call int64 | molecular_junction__fitness float64 0 2.46 | structure__species listlengths 17 72 | structure__positions listlengths 17 72 | phonon_transport__electrode_model stringclasses 1
value | phonon_transport__kappa float64 0.1 10.5 ⌀ | phonon_transport__energy listlengths 5k 5k ⌀ | phonon_transport__transmission listlengths 5k 5k ⌀ | electronic_transport__electrode_geometry stringclasses 1
value | electronic_transport__electrode_method stringclasses 1
value | electronic_transport__conductance float64 0 0.12 ⌀ | electronic_transport__seebeck float64 -371.29 265 ⌀ | electronic_transport__kappa_el float64 0.04 34.2 ⌀ | electronic_transport__zt float64 3.02 8.63 ⌀ | electronic_transport__energy listlengths 1k 1k ⌀ | electronic_transport__transmission listlengths 1k 1k ⌀ | upconversion__log_p_upconversion float64 7.88 12.6 ⌀ | upconversion__log_p_upconversion_scaled float64 0.35 6.44 ⌀ | upconversion__molecular_length float64 9.46 33.1 ⌀ | upconversion__surface_area float64 11.3 320 ⌀ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
optomechanics | feeed791d83dfab46e45cca3d9d91139 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C1=NC(C#CC([H])=C([H])C#CC([H])=C([H])C([H])=C([H])C#CC([H])=C([H])C([H])=C([H])S[Au])=C2C(=N1)C([H])=C([H])C([H])=C2[H] | [:1frag_41][Branch][:0frag_41][C][:0frag_65][Ring1][:1frag_41][Ring1][:0frag_41][Branch][:1frag_65][Ring1][:1frag_41][C][:1frag_65][Ring1][:5frag_57][#Branch] | 4.158395 | null | null | 0.308189 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-0.32635193,
0.57021634,
3.1526139
],
[
-0.65927513,
1.03360118,
4.37046996
],
[
-1.84817669,
2.60493618,
5.83754833
],
[
-1.51732622,
2.1464238,
4.60689944
],
[
-1.00031768,
1.57060028,
8.07527993
],
[
-1.39055135,
2.04717533... | null | null | null | null | null | null | null | null | null | null | null | null | 10.315089 | 3.071841 | 25.768299 | 69.457418 | |
optomechanics | fef2e515ba79e75b34cfd30efda9020b | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(C#CC#CC([H])=C([H])C1=C([H])C(C2=C(Cl)C(C([H])([H])[H])=C3N=C4C(=O)N([H])C(=O)N=C4N([H])C3=C2[H])=C2N=C3C(=O)N([H])C(=O)N=C3N([H])C2=C1[H])=C([H])C#CS[Au] | [:1frag_65][C][:0frag_41][Ring1][:0frag_65][Ring1][:1frag_65][C][:1frag_41][=Branch][:2frag_56][Ring2][:2frag_56][Ring2][:0frag_5][pop][=Branch][:0frag_20][pop][#Branch] | 4.367989 | null | null | 0.057058 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"C",
"Cl",
"Au",
... | [
[
0.62697613,
-0.2489895,
3.02513923
],
[
0.10520619,
-0.01467241,
4.09657723
],
[
0.01851088,
0.07256172,
6.5070815
],
[
-0.54137228,
0.279248,
5.29043751
],
[
-1.19735643,
0.64301397,
8.74004554
],
[
-0.63171821,
0.37496284,
... | null | null | null | null | null | null | null | null | null | null | null | null | 8.327485 | 0.611839 | 25.906842 | 115.674406 | |
optomechanics | fef99d0ae95cf4ee817f67b93966f21a | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(C#CC(=C([H])C#CC1=C(F)C(C([H])([H])[H])=C2N=C3C(=O)N(C(=O)OC4([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C4([H])[H])C(=O)N=C3N([H])C2=C1[H])C([H])([H])[H])=C([H])S[Au] | [:1frag_41][Ring1][:1frag_65][Ring1][:1frag_50][Ring1][:0frag_65][Ring1][:2frag_56][Ring1][:0frag_16][pop][Ring1][:0frag_5][pop][Ring1][:1frag_10][Ring1][:1frag_26][Ring1] | 4.106571 | null | null | 0.141866 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"F",
"C",
"O",
"C",
"O",
"C",
"C",
"C",
"C",
"C",
"C",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
... | [
[
-1.2402306,
-2.42370305,
1.71362421
],
[
-1.66132427,
-3.24628412,
2.6914853
],
[
-1.58393471,
-2.92254518,
4.04374224
],
[
-1.50383801,
-2.61967575,
5.21601934
],
[
-1.76672309,
-3.10106942,
7.54378824
],
[
-1.38942388,
-2.24... | null | null | null | null | null | null | null | null | null | null | null | null | 8.099239 | 1.332305 | 23.397389 | 56.475127 | |
optomechanics | fefd27d2e5947ee3b63c378194eca7b3 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C1=NC(C2=C(Br)N=C(F)N=C2OC(=O)C#CC([H])=C([H])C#CS[Au])=C([H])C([H])=N1 | [:0frag_65][C][:1frag_41][Ring1][:0frag_65][Ring1][:1frag_10][Ring1][:1frag_37][Branch][:0frag_16][pop][Branch][:0frag_38][pop][Branch][:3frag_37][Ring1] | 4.119287 | null | null | 0.243994 | [
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"O",
"N",
"C",
"N",
"C",
"C",
"C",
"F",
"Br",
"N",
"C",
"N",
"C",
"C",
"C",
"Au",
"S",
"H",
"H",
"H",
"H",
"H"
] | [
[
-0.37429046,
-1.49844612,
3.79123902
],
[
0.14110795,
-1.52415343,
2.69091439
],
[
-1.00717211,
-1.40995469,
5.02278501
],
[
-0.74861313,
-2.24287287,
6.05930484
],
[
-1.99544731,
-2.00350606,
8.3302421
],
[
-1.40547301,
-2.12... | null | null | null | null | null | null | null | null | null | null | null | null | 8.149836 | 2.399751 | 14.643204 | 58.124019 | |
optomechanics | fefd9b9c3e4ec82c8949f9f27ff0d901 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(C#CC#CC1=C(Br)C([H])=C2N=C3C(=O)N([H])C(=O)N=C3N(C#N)C2=C1C(C([H])([H])[H])(C([H])([H])[H])C([H])([H])[H])=C([H])C([H])=C(S[Au])C([H])([H])[H] | [:1frag_50][Ring1][:0frag_41][C][:1frag_65][Ring1][:1frag_65][C][:2frag_56][=Branch][:0frag_46][pop][Ring2][:0frag_38][pop][=Branch][:2frag_33][Ring2][pop][Ring2] | 4.282181 | null | null | 0.276476 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"N",
"C",
"Br",
"C",
"C",
"C",
"C",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
... | [
[
-0.26093827,
0.68390647,
3.22668962
],
[
-0.54939908,
1.85297911,
2.60658919
],
[
-0.89277964,
3.11358802,
3.33813176
],
[
0.05810705,
-0.69604277,
5.21423246
],
[
-0.24270006,
0.49407781,
4.62946669
],
[
0.07994726,
-0.868489... | null | null | null | null | null | null | null | null | null | null | null | null | 9.504282 | 2.75841 | 19.594491 | 77.679763 | |
optomechanics | ff107e827e74e72cd201a051596c53e3 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]OC1=C(C#CC([H])=C([H])C#CC([H])=C([H])S[Au])C([H])=C2C(=C1C#CC1=C([H])C([H])=C3N=C4C(=O)N([H])C(=O)N=C4N(C#N)C3=C1[H])N=C1C(=O)N([H])C(=O)N=C1N2[H] | [:1frag_41][C][:1frag_65][C][:1frag_41][Ring1][:1frag_65][#Branch][:2frag_56][Ring1][:0frag_4][pop][Ring1][:1frag_65][#Branch][:2frag_56][=Branch][:0frag_46][pop][#Branch] | 4.494033 | null | null | 0.052876 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"O",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"N",
"C",
"... | [
[
-1.86831621,
0.04191724,
2.61769925
],
[
-2.35506255,
0.05277303,
3.87358716
],
[
-1.54569835,
0.02929409,
5.00427019
],
[
-0.81608795,
0.00832632,
5.97557411
],
[
0.01897872,
-0.01581652,
7.08250996
],
[
1.37074531,
-0.052501... | null | null | null | null | null | null | null | null | null | null | null | null | 8.550314 | 0.565631 | 24.079039 | 171.945624 | |
optomechanics | ff1267a126ac9fe1336e687e384008da | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C1=NC([H])=C(OC(=O)C#CC#CC([H])=C([H])C#CC([H])=C([H])C#CS[Au])C(Cl)=N1 | [:1frag_65][C][:1frag_41][N][:0frag_65][C][:0frag_41][Ring1][:0frag_65][C][:1frag_65][Ring1][:1frag_10][Ring1][:2frag_37][Branch][:0frag_20][pop]frag_43][Branch] | 4.379666 | null | null | 0.310333 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"O",
"N",
"C",
"N",
"C",
"C",
"C",
"Cl",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
1.48291457,
-0.15222751,
2.71609903
],
[
1.24086164,
-0.04761254,
3.9008537
],
[
0.89864018,
0.07947907,
5.24301798
],
[
1.7866954,
-0.06895286,
6.25316905
],
[
1.11235013,
0.15899474,
8.75923837
],
[
1.42811602,
0.05465581,
... | null | null | null | null | null | null | null | null | null | null | null | null | 8.658515 | 3.204531 | 23.280034 | 17.713794 | |
phonon | ff1c9cef92bc20556348fb55fc15aea0 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN1-xTB (xtb --opt extreme --gfn 1) | GFN1-xTB (xtb --hess --gfn 1) | GFN1-xTB (dxtb) | NEGF | null | 300 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 18
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 6
n_explicit_pops = 3
include_descriptors = True
use_smarts_filters = True
[Pretrain]
... | [H]C1=C([H])C([H])=C2C(=C1[H])C([H])=C(C#CS[Au])C(Br)=C2C1=C2C([H])=C(C#CS[Au])C([H])=C([H])C2=C([H])C2=C([H])C([H])=C([H])C([H])=C21 | [:0frag_65][Ring2][#Branch][:5frag_64][=N][:6frag_12][N][:0frag_38][pop][N][:0frag_65][#Branch] | 3.178653 | null | null | 1.208654 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"Br",
"C",
"C",
"Au",
"S",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
... | [
[
-2.349860897537829,
1.6511759934170016,
2.866479952700231
],
[
-1.6333327076690238,
0.7460899567656089,
2.483273215065202
],
[
-7.607247372250651,
6.967332553394962,
7.495145671215085
],
[
-7.346824171996035,
5.899335960133706,
8.384941881035877
],
[... | Debye model: E_D = 20 meV, gamma = -7 eV/Ang^2. Ref: Markussen, J. Chem. Phys. 139, 244101 (2013); Blaschke & Pauly, ACS Nano 19(36) (2025). | 0.129273 | [
0,
0.004400880075991154,
0.008801760151982307,
0.013202640227973461,
0.017603520303964615,
0.022004397585988045,
0.026405280455946922,
0.030806157737970352,
0.03520704060792923,
0.03960791602730751,
0.04400879517197609,
0.048409681767225266,
0.052810560911893845,
0.057211436331272125,
0.... | [
0,
2.3119817150162036e-13,
9.24132515303655e-13,
2.0842479218213805e-12,
3.696334471142704e-12,
5.787758293462897e-12,
8.346051280638811e-12,
1.1380750508660498e-11,
1.4834728931378827e-11,
1.8737738791130276e-11,
2.3088512005053907e-11,
2.794066540634521e-11,
3.317942101621618e-11,
3.9063... | null | null | null | null | null | null | null | null | null | null | null | null | |
optomechanics | ff1f6a0e2739f293acf2bb5aeb10c8cd | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C1=NC(=O)N([H])C(C([H])=C([H])C([H])=C([H])C([H])=C([H])C#CC([H])=C([H])C#CC([H])=C([H])S[Au])=C1[H] | [:0frag_41][=N][:0frag_65][Ring1][:0frag_41][C][:1frag_65][C][:1frag_41][=N][:1frag_41][N][:0frag_41][Branch][C][C][Ring1][Ring2][:2frag_53][Ring2] | 4.398116 | null | null | 0.196287 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"C",
"C",
"N",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-1.35783586,
-0.27727558,
3.00466953
],
[
-2.35184814,
-0.43423479,
2.11612968
],
[
-1.69183845,
-0.36976571,
5.58767386
],
[
-1.5515562,
-0.32978125,
4.38166583
],
[
-3.05928027,
-0.63060726,
7.55935221
],
[
-1.86024137,
-0.4... | null | null | null | null | null | null | null | null | null | null | null | null | 9.027479 | 2.772153 | 19.457088 | 51.23307 | |
phonon | ff30ab37323441b883d6215cd597647a | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN1-xTB (xtb --opt extreme --gfn 1) | GFN1-xTB (xtb --hess --gfn 1) | GFN1-xTB (dxtb) | NEGF | null | 300 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 18
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 6
n_explicit_pops = 3
include_descriptors = True
use_smarts_filters = True
[Pretrain]
... | [H]C1=C([H])C([H])=C2C(=C1[H])C([H])=C1C(C#CS[Au])=C([H])C([H])=C([H])C1=C2C1=C([H])C([H])=C([H])C(C([H])([H])OS[Au])=C1[H] | [:0frag_65]frag_55][#Branch][:7frag_64][O][:1frag_0][Ring2][=Branch][:1frag_1]frag_28][C] | 2.816667 | null | null | 0.758385 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"Au",
"S",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-1.7433142900478305,
0.7758530968810532,
3.582378348920755
],
[
-1.7014119288908962,
0.14220381268785265,
2.5440114746625633
],
[
-6.794840424760821,
-1.071167788298857,
7.177989967559104
],
[
-6.793804233002393,
-0.3471224949358366,
8.392490529362094
... | Debye model: E_D = 20 meV, gamma = -7 eV/Ang^2. Ref: Markussen, J. Chem. Phys. 139, 244101 (2013); Blaschke & Pauly, ACS Nano 19(36) (2025). | 0.222968 | [
0,
0.004400880075991154,
0.008801760151982307,
0.013202640227973461,
0.017603520303964615,
0.022004397585988045,
0.026405280455946922,
0.030806157737970352,
0.03520704060792923,
0.03960791602730751,
0.04400879517197609,
0.048409681767225266,
0.052810560911893845,
0.057211436331272125,
0.... | [
0,
1.2638972984521657e-13,
5.054231230587625e-13,
1.1329287117819997e-12,
2.019095828031947e-12,
3.269843597275557e-12,
4.603744468978377e-12,
6.233206225475518e-12,
8.116117153345037e-12,
1.0305792677578474e-11,
1.268011303595662e-11,
1.548731975997697e-11,
1.8397524823021705e-11,
2.15111... | null | null | null | null | null | null | null | null | null | null | null | null | |
optomechanics | ff31478ffb0f1a741c5406dd17b6fa6b | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]OC(=O)C1=NC(=O)N([H])C(C#CC([H])=C([H])C#CC([H])=C([H])C#CS[Au])=C1[H] | [:1frag_65][N][:0frag_41][=Branch][C][:1frag_65][C][:1frag_41]frag_37][Branch][Ring1][:1frag_65][C][:2frag_53][Ring2][:1frag_10][Branch][C] | 4.341234 | null | null | 0.308267 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"C",
"C",
"N",
"O",
"C",
"O",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
1.63911157,
-1.33941403,
2.26298022
],
[
1.67617525,
-1.37185989,
3.47608029
],
[
2.53117986,
-2.08729995,
5.61813445
],
[
1.66568848,
-1.36735962,
4.86621331
],
[
2.50664799,
-2.07348212,
7.00703452
],
[
2.48976742,
-2.066577... | null | null | null | null | null | null | null | null | null | null | null | null | 8.588234 | 3.140112 | 19.104139 | 26.170241 | |
optomechanics | ff39e42d102e6cc85ff61352b8339525 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C1=NC([H])=C([H])C(N2C3=NC(=O)N([H])C(=O)C3=NC3=C([H])C([H])=C([H])C(C#CC([H])=C([H])C#CC([H])=C([H])C#CC([H])=C([H])C([H])=C([H])S[Au])=C32)=N1 | [:0frag_41][Ring1][:1frag_41][Ring1][:0frag_65][C][:1frag_41]frag_36][Ring1][:0frag_65][Ring1][:0frag_41][Ring1][:0frag_65][Ring1][:1frag_56][#Branch][:1frag_37][Ring1] | 4.238435 | null | null | 0.275033 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"N",
"C",
"N",
"C",
"C",
"C",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
... | [
[
-0.15680513,
-0.47670534,
3.28686171
],
[
-1.12247192,
-1.22592188,
2.73125927
],
[
0.09126679,
-0.41593153,
4.68694625
],
[
1.0672111,
0.34279891,
5.23842192
],
[
1.52404799,
0.45903659,
7.80046113
],
[
1.30577617,
0.40015622... | null | null | null | null | null | null | null | null | null | null | null | null | 9.913277 | 2.818063 | 24.147563 | 69.4808 | |
optomechanics | ff41400c2e964b1c8eecc43b6390faed | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(C#CC([H])=C([H])C([H])=C([H])C#CC1=C([H])C([H])=C2N=C3C(=O)N([H])C(=O)N=C3N([H])C2=C1[H])=C([H])S[Au] | [:1frag_41][C][:1frag_65][Ring1][:1frag_41][C][Ring1][Ring1][:0frag_41][C][Ring2][:1frag_65][C][C][C][C][C][C][C][:2frag_56][=Branch] | 3.878568 | null | null | 0.213019 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
0.19461215,
-0.16171401,
3.20584318
],
[
0.01456399,
-0.02342126,
4.53244017
],
[
-0.98904176,
0.75943258,
5.0959743
],
[
-1.87101659,
1.44751797,
5.5696996
],
[
-2.8815265,
2.23655686,
6.10451581
],
[
-3.10102207,
2.40571297,... | null | null | null | null | null | null | null | null | null | null | null | null | 8.618087 | 1.854269 | 20.604061 | 71.704698 | |
optomechanics | ff41d2da2476b0e0948463e32df35382 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C([H])=C([H])N1C(=O)N=C2C(=NC3=C(F)C(C#N)=C(C#CC#CC([H])=C([H])C([H])=C([H])S[Au])C([H])=C3N2[H])C1=O | [:1frag_41][C][:1frag_41][C][:0frag_65][C][:0frag_65][Ring1][:2frag_56][Ring2][:0frag_16][pop][#Branch][:0frag_46][pop][Ring2][:0frag_41][Ring1] | 4.376255 | null | null | 0.344032 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"F",
"N",
"C",
"C",
"C",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
1.14476004,
-0.62377216,
2.94422932
],
[
1.88504217,
-1.04087364,
3.99002558
],
[
1.50138622,
-0.8197445,
5.33834751
],
[
2.23132298,
-1.23917571,
6.40271621
],
[
1.48569721,
-0.82927634,
8.86390425
],
[
1.839036,
-1.02117333,... | null | null | null | null | null | null | null | null | null | null | null | null | 9.86996 | 3.699936 | 23.174397 | 33.492577 | |
phonon | ff45689dd4e34fa280717d1760e260cd | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN1-xTB (xtb --opt extreme --gfn 1) | GFN1-xTB (xtb --hess --gfn 1) | GFN1-xTB (dxtb) | NEGF | null | 300 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 18
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 6
n_explicit_pops = 3
include_descriptors = True
use_smarts_filters = True
[Pretrain]
... | [H]C1=C([H])C([H])=C2C(=C1[H])C([H])=C1C(C#CS[Au])=C([H])C([H])=C([H])C1=C2C1=C([H])C([H])=C([H])C(C([H])([H])OS[Au])=C1[H] | [:0frag_65][=C][:7frag_64][O][:1frag_0]frag_51][Ring2][#Branch][=Branch][#Branch][:1frag_1][C] | 2.816667 | null | null | 0.815222 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"Au",
"S",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-1.7424570790812135,
0.7747009898349395,
3.5831414792806067
],
[
-1.6999503734735155,
0.14082788454226064,
2.5449408079644447
],
[
-6.79312584776404,
-1.0700094370325794,
7.181195984162669
],
[
-6.792720782608751,
-0.34408649289477844,
8.394569821900157
... | Debye model: E_D = 20 meV, gamma = -7 eV/Ang^2. Ref: Markussen, J. Chem. Phys. 139, 244101 (2013); Blaschke & Pauly, ACS Nano 19(36) (2025). | 0.207423 | [
0,
0.004400880075991154,
0.008801760151982307,
0.013202640227973461,
0.017603520303964615,
0.022004397585988045,
0.026405280455946922,
0.030806157737970352,
0.03520704060792923,
0.03960791602730751,
0.04400879517197609,
0.048409681767225266,
0.052810560911893845,
0.057211436331272125,
0.... | [
0,
1.3065143042965965e-13,
5.229947334581264e-13,
1.1747569063358387e-12,
2.0994900696430507e-12,
3.267262545583738e-12,
4.7054127087775566e-12,
6.401224168783859e-12,
8.38318910817426e-12,
1.0586227207343146e-11,
1.3066465444355746e-11,
1.5921059609569355e-11,
1.8904476942194215e-11,
2.21... | null | null | null | null | null | null | null | null | null | null | null | null | |
optomechanics | ff4750990326288ef8c3a72368010ae1 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(C#CC#CC([H])=C([H])C([H])=C([H])C([H])=C([H])C1=C([H])C([H])=C2N=C3C(=O)N([H])C(=O)N=C3N([H])C2=C1[H])=C([H])S[Au] | [:0frag_41][C][:1frag_65][N][:1frag_65][C][:0frag_41][C][Ring1][Branch]frag_65][C][:1frag_41][C][:0frag_41][C][C][Ring2][Ring1][:2frag_56][=Branch][C] | 3.890501 | null | null | 0.232884 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-0.6480925,
0.09179296,
3.24232268
],
[
-1.82285402,
0.25041305,
2.61006333
],
[
-0.52324882,
0.07663952,
4.62473869
],
[
-0.38397247,
0.0596114,
5.83607632
],
[
-0.24023083,
0.04154843,
7.16813807
],
[
-0.10751414,
0.02473176... | null | null | null | null | null | null | null | null | null | null | null | null | 9.273572 | 2.765171 | 24.293967 | 41.031399 | |
phonon | ff49d7049e37e5964ac2aa0e0e151317 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN1-xTB (xtb --opt extreme --gfn 1) | GFN1-xTB (xtb --hess --gfn 1) | GFN1-xTB (dxtb) | NEGF | null | 300 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 18
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 6
n_explicit_pops = 3
include_descriptors = True
use_smarts_filters = True
[Pretrain]
... | [H]C1=C([H])C([H])=C2C(=C1[H])C([H])=C1C(C#CS[Au])=C([H])C([H])=C([H])C1=C2C1=C([H])C([H])=C([H])C(C([H])([H])OS[Au])=C1[H] | [:0frag_65][O][:7frag_64][O][:1frag_0][Ring2][:1frag_1][Ring2] | 2.816667 | null | null | 0.801023 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"Au",
"S",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-1.7337804678303161,
0.7568035403519109,
3.5903611850070027
],
[
-1.6899925278844319,
0.1225669510731604,
2.5524315136245654
],
[
-6.7924788846814765,
-1.0852006040354334,
7.178980875256093
],
[
-6.7935625538136595,
-0.35968606974122647,
8.39260725682736... | Debye model: E_D = 20 meV, gamma = -7 eV/Ang^2. Ref: Markussen, J. Chem. Phys. 139, 244101 (2013); Blaschke & Pauly, ACS Nano 19(36) (2025). | 0.2111 | [
0,
0.004400880075991154,
0.008801760151982307,
0.013202640227973461,
0.017603520303964615,
0.022004397585988045,
0.026405280455946922,
0.030806157737970352,
0.03520704060792923,
0.03960791602730751,
0.04400879517197609,
0.048409681767225266,
0.052810560911893845,
0.057211436331272125,
0.... | [
0,
1.1892975482468565e-13,
4.761201741025622e-13,
1.0710987218692791e-12,
1.9055291199110425e-12,
2.954462412566028e-12,
4.305143481292406e-12,
5.814133029191648e-12,
7.56708931626271e-12,
9.588808046190334e-12,
1.1849625447535317e-11,
1.436577939939454e-11,
1.7134677357533157e-11,
2.01222... | null | null | null | null | null | null | null | null | null | null | null | null | |
phonon | ff4a13a14d1deca996394a40ef780d08 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN1-xTB (xtb --opt extreme --gfn 1) | GFN1-xTB (xtb --hess --gfn 1) | GFN1-xTB (dxtb) | NEGF | null | 300 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 18
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 6
n_explicit_pops = 3
include_descriptors = True
use_smarts_filters = True
[Pretrain]
... | [H]C1=C([H])C([H])=C2C(=C1[H])C([H])=C1C(C#CS[Au])=C([H])C([H])=C([H])C1=C2C1=C([H])C([H])=C([H])C(C([H])([H])OS[Au])=C1[H] | frag_44][C][:0frag_65][N][:7frag_64][O][:1frag_0][=N][Ring2][:1frag_1]frag_55][O] | 2.816667 | null | null | 0.766907 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"Au",
"S",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-1.7285391035267856,
0.7585617647317462,
3.5931315828112433
],
[
-1.68595170768106,
0.12439629188148896,
2.555108811006607
],
[
-6.782971995869798,
-1.0839850767118633,
7.187089453907674
],
[
-6.784247766179817,
-0.3567675632274972,
8.399689265301106
]... | Debye model: E_D = 20 meV, gamma = -7 eV/Ang^2. Ref: Markussen, J. Chem. Phys. 139, 244101 (2013); Blaschke & Pauly, ACS Nano 19(36) (2025). | 0.220491 | [
0,
0.004400880075991154,
0.008801760151982307,
0.013202640227973461,
0.017603520303964615,
0.022004397585988045,
0.026405280455946922,
0.030806157737970352,
0.03520704060792923,
0.03960791602730751,
0.04400879517197609,
0.048409681767225266,
0.052810560911893845,
0.057211436331272125,
0.... | [
0,
1.2708828130494898e-13,
5.088847637550742e-13,
1.1455709427940497e-12,
2.0356724118875125e-12,
3.1769140269866103e-12,
4.578401460036963e-12,
6.1956021910059e-12,
8.115455356338952e-12,
1.0272878901707028e-11,
1.2657495711276834e-11,
1.5321351826136365e-11,
1.8200340540230897e-11,
2.138... | null | null | null | null | null | null | null | null | null | null | null | null | |
thermoelectric | ff4c8605834a8b8a070661b3220cfe48 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN1-xTB (xtb --opt extreme --gfn 1) | GFN1-xTB (xtb --hess --gfn 1) | GFN1-xTB (dxtb) | NEGF | null | 300 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(C#CC(=C([H])C1=C2C(=C(C#N)C([H])=C1[H])C(S[Au])=C([H])N2[H])C([H])([H])[H])=C([H])C([H])=C([H])C([H])([H])OS[Au] | [:0frag_1][Ring1][:0frag_41][Ring1][:0frag_41][Ring1][:0frag_65][Ring1][:1frag_50][Ring1][:2frag_24][Ring1][:0frag_46][pop] | 4.322384 | null | null | 0.76538 | [
"C",
"O",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"N",
"C",
"Au",
"S",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-2.1347607604494336,
0.22646982522473424,
2.9760404882537133
],
[
-1.3402733069418769,
-0.8702718828396604,
2.570871961602873
],
[
-1.0051712206091183,
0.23496445634490737,
5.268672533037278
],
[
-2.054485526967662,
0.4434638599538284,
4.4618109439113525... | Debye model: E_D = 20 meV, gamma = -7 eV/Ang^2. Ref: Markussen, J. Chem. Phys. 139, 244101 (2013); Blaschke & Pauly, ACS Nano 19(36) (2025). | 2.490128 | [
0,
0.004400880075991154,
0.008801760151982307,
0.013202640227973461,
0.017603520303964615,
0.022004397585988045,
0.026405280455946922,
0.030806157737970352,
0.03520704060792923,
0.03960791602730751,
0.04400879517197609,
0.048409681767225266,
0.052810560911893845,
0.057211436331272125,
0.... | [
0,
1.2633628952013476e-12,
5.049761823971988e-12,
1.1390872620142822e-11,
2.0088611329960315e-11,
3.14648133936668e-11,
4.515867541021734e-11,
6.05946542941993e-11,
7.886615666086172e-11,
9.944881029788633e-11,
1.2271345051217963e-10,
1.4629725209047706e-10,
1.731135929050609e-10,
2.013340... | Au(111) 3x4x6 slab (left and right) | Surface Green's function precomputed with DFTB+ (Slater-Koster parameters for Au). Electrode data available at https://huggingface.co/datasets/guise868/electrode_data | 0.030511 | -185.278687 | 3.820929 | 3.857605 | [
-5.933600425720215,
-5.921587944030762,
-5.909575462341309,
-5.897564888000488,
-5.885552406311035,
-5.873539924621582,
-5.861527442932129,
-5.849516868591309,
-5.8375043869018555,
-5.825491905212402,
-5.813479423522949,
-5.801468849182129,
-5.789456367492676,
-5.777443885803223,
-5.7654... | [
1.5832060107356938e-9,
1.5654640916906715e-9,
9.402296718974412e-10,
1.3314240820960777e-9,
1.246173941815698e-9,
2.048814451427461e-9,
1.8170829285679702e-9,
2.3464388210214793e-9,
2.890521821896641e-9,
1.1372488728511598e-8,
0.000020031198801007122,
1.4300559847413297e-8,
8.913229265772316... | null | null | null | null | |
phonon | ff4ed314b4a6c5370c2502eda62db5c3 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN1-xTB (xtb --opt extreme --gfn 1) | GFN1-xTB (xtb --hess --gfn 1) | GFN1-xTB (dxtb) | NEGF | null | 300 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 18
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 6
n_explicit_pops = 3
include_descriptors = True
use_smarts_filters = True
[Pretrain]
... | [H]C1=C([H])C([H])=C2C(=C1[H])C([H])=C1C(C#CS[Au])=C([H])C([H])=C([H])C1=C2C1=C([H])C([H])=C([H])C(C([H])([H])OS[Au])=C1[H] | [:0frag_65]frag_15][=Branch][:7frag_64][O][:1frag_0]frag_51][Ring2][:1frag_1]frag_15][Ring2] | 2.816667 | null | null | 0.778118 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"Au",
"S",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-1.7320320609024265,
0.7499144019578443,
3.5926366246482826
],
[
-1.687145153674086,
0.11593944205905907,
2.5545966158767257
],
[
-6.79343716257673,
-1.0921160412121906,
7.1774763913274375
],
[
-6.795309119879949,
-0.36674622408164015,
8.39118919394495
... | Debye model: E_D = 20 meV, gamma = -7 eV/Ang^2. Ref: Markussen, J. Chem. Phys. 139, 244101 (2013); Blaschke & Pauly, ACS Nano 19(36) (2025). | 0.217314 | [
0,
0.004400880075991154,
0.008801760151982307,
0.013202640227973461,
0.017603520303964615,
0.022004397585988045,
0.026405280455946922,
0.030806157737970352,
0.03520704060792923,
0.03960791602730751,
0.04400879517197609,
0.048409681767225266,
0.052810560911893845,
0.057211436331272125,
0.... | [
0,
1.4364660990643513e-13,
5.749822276288064e-13,
1.292746183538529e-12,
2.301917337299564e-12,
3.578783753718784e-12,
5.170479495941738e-12,
6.992455659632357e-12,
9.147377300067205e-12,
1.1585945744463366e-11,
1.4315141086407301e-11,
1.7340903019080756e-11,
2.0618898949331665e-11,
2.4173... | null | null | null | null | null | null | null | null | null | null | null | null | |
optomechanics | ff533497d3bb277ff7ab0acf67cd2fa1 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(C#CC([H])=C([H])C1=C([H])C([H])=C2N=C3C(=O)N([H])C(=O)N=C3N([H])C2=C1[H])=C([H])C([H])=C([H])S[Au] | [:1frag_41][Ring1][Ring1][C][C][Ring1][:0frag_41][Ring2][:1frag_65][Ring1][Ring2][:1frag_41][Ring1][Ring2][Ring2][Ring1][Branch][:2frag_56][=Branch][=Branch][#Branch] | 3.686909 | null | null | 0.226656 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-1.18492488,
-2.70550702,
1.54483625
],
[
-0.98772771,
-2.20085668,
2.78174068
],
[
-0.29171708,
-0.51739103,
4.42850508
],
[
-0.45565688,
-0.93891527,
3.14973081
],
[
-0.62803304,
-1.27865141,
5.54156637
],
[
-0.89340998,
-1.... | null | null | null | null | null | null | null | null | null | null | null | null | 8.056682 | 1.934326 | 16.890354 | 60.734131 | |
thermoelectric | ff54f124e3c9fc79d784b654101090ca | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN1-xTB (xtb --opt extreme --gfn 1) | GFN1-xTB (xtb --hess --gfn 1) | GFN1-xTB (dxtb) | NEGF | null | 300 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]OC(=O)C1=NC([H])=C2C(=N1)C(C#CC(=O)N([H])C1=C([H])C([H])=C(S[Au])C([H])=C1[H])=C(Br)C(C(=O)C([H])([H])S[Au])=C2[H] | [:5frag_0][Branch][:0frag_13][Ring1][:1frag_65][Ring1][:1frag_57][Ring1][:0frag_38][pop][=Branch][:1frag_10][pop][Branch][:1frag_47][Ring1] | 3.498893 | null | null | 0.786373 | [
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"Br",
"O",
"C",
"O",
"O",
"C",
"C",
"Au",
"S",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
1.0679928429784602,
-0.04323097110381223,
3.2789965882247656
],
[
0.9500717210283081,
0.13131409937803104,
4.64456584669778
],
[
0.727441410106718,
-0.9665853156716897,
5.481238702929832
],
[
0.6200022151449645,
-2.2418672223478815,
4.925816295480968
]... | Debye model: E_D = 20 meV, gamma = -7 eV/Ang^2. Ref: Markussen, J. Chem. Phys. 139, 244101 (2013); Blaschke & Pauly, ACS Nano 19(36) (2025). | 7.377374 | [
0,
0.004400880075991154,
0.008801760151982307,
0.013202640227973461,
0.017603520303964615,
0.022004397585988045,
0.026405280455946922,
0.030806157737970352,
0.03520704060792923,
0.03960791602730751,
0.04400879517197609,
0.048409681767225266,
0.052810560911893845,
0.057211436331272125,
0.... | [
0,
2.2701433788352432e-10,
9.07857566900816e-10,
2.0416124346667175e-9,
3.6242959744470227e-9,
5.659710033967258e-9,
8.139485530023194e-9,
1.1054756221540174e-8,
1.4422822935955537e-8,
1.823732809214107e-8,
2.245992192229096e-8,
2.7120639956024206e-8,
3.2213304024253375e-8,
3.7678788089579... | Au(111) 3x4x6 slab (left and right) | Surface Green's function precomputed with DFTB+ (Slater-Koster parameters for Au). Electrode data available at https://huggingface.co/datasets/guise868/electrode_data | 0.015825 | -273.883453 | 0.59416 | 3.461365 | [
-5.933600425720215,
-5.921587944030762,
-5.909575462341309,
-5.897564888000488,
-5.885552406311035,
-5.873539924621582,
-5.861527442932129,
-5.849516868591309,
-5.8375043869018555,
-5.825491905212402,
-5.813479423522949,
-5.801468849182129,
-5.789456367492676,
-5.777443885803223,
-5.7654... | [
-1.0522431537207666e-10,
-1.4073051057827968e-10,
-1.5668064623497457e-9,
-1.1811507327763593e-9,
-1.9652035554429403e-9,
-1.2175276065118368e-10,
-1.7553906106471118e-9,
-4.213689397403186e-9,
-1.1854826842405686e-10,
-9.23849774459029e-10,
-1.1183972858930247e-8,
-5.962407234605394e-10,
-1... | null | null | null | null | |
phonon | ff57cf7459c0a12ccd3b199233d75ff8 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN1-xTB (xtb --opt extreme --gfn 1) | GFN1-xTB (xtb --hess --gfn 1) | GFN1-xTB (dxtb) | NEGF | null | 300 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 18
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 6
n_explicit_pops = 3
include_descriptors = True
use_smarts_filters = True
[Pretrain]
... | [H]C1=C([H])C([H])=C2C(=C1[H])C([H])=C1C(C#CS[Au])=C([H])C([H])=C([H])C1=C2C1=C([H])C([H])=C([H])C(C([H])([H])OS[Au])=C1[H] | frag_44][C][:0frag_65]frag_15][Branch][:7frag_64][O][:1frag_0][Ring2][#Branch][:1frag_1][=C] | 2.816667 | null | null | 0.831231 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"Au",
"S",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-1.753049136567058,
0.7838975974496167,
3.5757171698996735
],
[
-1.7105286198691703,
0.1503826191699956,
2.5372973080163637
],
[
-6.804038698024686,
-1.0626007937301243,
7.172302452520054
],
[
-6.802404321088384,
-0.3389371399260024,
8.387027501410607
... | Debye model: E_D = 20 meV, gamma = -7 eV/Ang^2. Ref: Markussen, J. Chem. Phys. 139, 244101 (2013); Blaschke & Pauly, ACS Nano 19(36) (2025). | 0.203428 | [
0,
0.004400880075991154,
0.008801760151982307,
0.013202640227973461,
0.017603520303964615,
0.022004397585988045,
0.026405280455946922,
0.030806157737970352,
0.03520704060792923,
0.03960791602730751,
0.04400879517197609,
0.048409681767225266,
0.052810560911893845,
0.057211436331272125,
0.... | [
0,
1.3065358528147747e-13,
5.421543747795299e-13,
1.7003433166670745e-12,
2.1604734060792774e-12,
3.297567514187749e-12,
4.7508988930411444e-12,
6.465749376877161e-12,
8.450080912769664e-12,
1.0715091140756083e-11,
1.3201477237767545e-11,
1.597141516263001e-11,
1.902994428704119e-11,
2.239... | null | null | null | null | null | null | null | null | null | null | null | null | |
optomechanics | ff5b9ecc1cd4cb8851d503fb6cd2ff89 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]OP(=O)(O[H])N1C(=O)N=C2C(=NC3=C([H])C([H])=C(C#CC([H])=C([H])C([H])=C(C([H])=C([H])S[Au])C([H])([H])[H])C([H])=C3N2[H])C1=O | [:0frag_41][Ring1][:1frag_50][Ring1][:0frag_41][Ring1][:1frag_65][Ring1][:2frag_56][Branch][:2frag_32][Ring1] | 3.997326 | null | null | 0.395477 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"O",
"P",
"O",
"O",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
1.44980263,
0.42763077,
4.27298632
],
[
0.77483204,
0.32465215,
3.11362093
],
[
1.69522126,
0.61460796,
6.65569632
],
[
0.8639123,
0.54530812,
5.57495411
],
[
-0.63039909,
0.57771943,
5.6746226
],
[
2.2456098,
0.74795854,
... | null | null | null | null | null | null | null | null | null | null | null | null | 10.518658 | 4.864354 | 22.643925 | 22.314209 | |
phonon | ff5c0e27d441f7d3ac014dd06f4e313e | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN1-xTB (xtb --opt extreme --gfn 1) | GFN1-xTB (xtb --hess --gfn 1) | GFN1-xTB (dxtb) | NEGF | null | 300 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 18
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 6
n_explicit_pops = 3
include_descriptors = True
use_smarts_filters = True
[Pretrain]
... | [H]C1=C([H])C([H])=C2C(=C1[H])C([H])=C1C(C#CS[Au])=C([H])C([H])=C([H])C1=C2C1=C([H])C([H])=C([H])C(C([H])([H])OS[Au])=C1[H] | [:0frag_65]frag_15][Branch][:7frag_64][O][:1frag_0][Ring2][#Branch][:1frag_1][Ring1] | 2.816667 | null | null | 0.82583 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"Au",
"S",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-1.7509768959333265,
0.7775320029090704,
3.577296465735916
],
[
-1.7076316336239474,
0.14339868246401985,
2.539282286826452
],
[
-6.799475925357209,
-1.065657695288006,
7.180165610279493
],
[
-6.796916534207909,
-0.34064799161449105,
8.394089149571174
... | Debye model: E_D = 20 meV, gamma = -7 eV/Ang^2. Ref: Markussen, J. Chem. Phys. 139, 244101 (2013); Blaschke & Pauly, ACS Nano 19(36) (2025). | 0.204759 | [
0,
0.004400880075991154,
0.008801760151982307,
0.013202640227973461,
0.017603520303964615,
0.022004397585988045,
0.026405280455946922,
0.030806157737970352,
0.03520704060792923,
0.03960791602730751,
0.04400879517197609,
0.048409681767225266,
0.052810560911893845,
0.057211436331272125,
0.... | [
0,
1.265530649025015e-13,
5.061214576780604e-13,
1.1345790843289572e-12,
2.0236848221472092e-12,
3.1405279852375623e-12,
4.449332395572991e-12,
6.229735911161827e-12,
8.120377634202036e-12,
1.0288317073281483e-11,
1.2707752385099358e-11,
1.533618197713249e-11,
1.822474809953789e-11,
2.1396... | null | null | null | null | null | null | null | null | null | null | null | null | |
optomechanics | ff5f0e927c7cdedb34d879c25896eba7 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C1=NC(Cl)=NC(C#CC#CC([H])=C([H])C#CC([H])=C([H])C([H])=C([H])S[Au])=C1[H] | [:1frag_41][C][:1frag_41][=Branch][=Branch][=Branch][#Branch][Branch][:1frag_65][Branch][:1frag_41][C][:1frag_65][C][:1frag_65][=N][:3frag_37][Ring1][:0frag_20][pop][Ring2] | 4.346847 | null | null | 0.437034 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"Cl",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-0.35406872,
-1.46508457,
2.84747799
],
[
-0.54204917,
-2.36520906,
3.82793181
],
[
-0.4722895,
-2.03294965,
5.20991639
],
[
-0.65692416,
-2.93407845,
6.20309848
],
[
-0.58519821,
-2.60604835,
7.55127893
],
[
-0.52179811,
-2.3... | null | null | null | null | null | null | null | null | null | null | null | null | 9.908744 | 4.460622 | 20.756579 | 22.163406 | |
optomechanics | ff79bf28e4cbe5ac4386b1b80336be0e | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(C#CC([H])=C([H])C([H])=C([H])C([H])=C([H])C1=C([H])C([H])=C2N=C3C(=O)N([H])C(=O)N=C3N([H])C2=C1[H])=C([H])S[Au] | [:1frag_41][Ring1][:1frag_65][Ring1][:1frag_41][C][:0frag_41][Ring1][:0frag_41][Ring1][:2frag_56][Branch] | 3.728696 | null | null | 0.204988 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
0.4260352,
-0.78877498,
3.0650039
],
[
0.63552017,
-2.01163199,
2.55062772
],
[
0.93179246,
-3.12490601,
3.33032586
],
[
1.19188616,
-4.10841525,
3.99519924
],
[
1.48988634,
-5.23973856,
4.74434778
],
[
1.6007971,
-5.25982397,... | null | null | null | null | null | null | null | null | null | null | null | null | 8.347127 | 2.30996 | 18.65902 | 46.0637 | |
optomechanics | ff7a17194bf88e15921dee4937f4d2d6 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(C#CC([H])=C([H])C([H])=C([H])S[Au])=C([H])C#CC1=C([H])C([H])=C2N=C3C(=O)N([H])C(=O)N=C3N([H])C2=C1[H] | [:1frag_41][Ring2][:1frag_41][C][Ring2][:1frag_65][Ring1][Ring2][Ring2][Ring2][Ring2][C][C][Ring1][:1frag_41][C][Ring1][:1frag_65][Ring1][:2frag_56][Branch] | 3.873205 | null | null | 0.269945 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
1.10472776,
0.52307349,
2.9804768
],
[
1.82004459,
0.84959824,
4.07322388
],
[
3.12211827,
1.42499149,
4.0438251
],
[
3.83874769,
1.74921195,
5.14725306
],
[
3.38850901,
1.55990536,
6.44889435
],
[
3.01269914,
1.40147538,
... | null | null | null | null | null | null | null | null | null | null | null | null | 8.777185 | 2.345689 | 21.167603 | 50.575302 | |
phonon | ff7b5dce121a05bdbe041339da80f943 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN1-xTB (xtb --opt extreme --gfn 1) | GFN1-xTB (xtb --hess --gfn 1) | GFN1-xTB (dxtb) | NEGF | null | 300 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 18
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 6
n_explicit_pops = 3
include_descriptors = True
use_smarts_filters = True
[Pretrain]
... | [H]C1=C([H])C([H])=C2C(=C1[H])C([H])=C1C(C#CS[Au])=C([H])C([H])=C([H])C1=C2C1=C([H])C([H])=C([H])C(C([H])([H])OS[Au])=C1[H] | [:0frag_65][=N][:7frag_64][O][:1frag_0][Ring2][#Branch][#Branch][:1frag_1]frag_15][Ring1] | 2.816667 | null | null | 0.784581 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"Au",
"S",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-1.7297295668376984,
0.7471189339835385,
3.594597441771143
],
[
-1.6852729242914062,
0.11405221306574684,
2.5559780585417813
],
[
-6.79374630837736,
-1.0939893262489537,
7.1760405446034605
],
[
-6.796443285463589,
-0.3684643000315228,
8.389658020629978
... | Debye model: E_D = 20 meV, gamma = -7 eV/Ang^2. Ref: Markussen, J. Chem. Phys. 139, 244101 (2013); Blaschke & Pauly, ACS Nano 19(36) (2025). | 0.215524 | [
0,
0.004400880075991154,
0.008801760151982307,
0.013202640227973461,
0.017603520303964615,
0.022004397585988045,
0.026405280455946922,
0.030806157737970352,
0.03520704060792923,
0.03960791602730751,
0.04400879517197609,
0.048409681767225266,
0.052810560911893845,
0.057211436331272125,
0.... | [
0,
1.438265332569591e-13,
5.763299993494231e-13,
1.2913304323416974e-12,
2.2981243644193405e-12,
3.6087484996810693e-12,
5.175480703722979e-12,
7.0592308040740015e-12,
9.19704763735485e-12,
1.1678123745806346e-11,
1.4333888243012183e-11,
1.734271580511315e-11,
2.0676078904546813e-11,
2.426... | null | null | null | null | null | null | null | null | null | null | null | null | |
optomechanics | ff83bac6d7ad4dbd161935c6b64aedf6 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C1=NC(=O)N([H])C(C([H])=C([H])C([H])=C([H])C#CC([H])=C([H])C([H])=C([H])C([H])=C([H])C#CS[Au])=C1[H] | [:1frag_65][N][:0frag_41][Branch][:0frag_41][C][Ring1][:1frag_41][Ring1][:0frag_65][Branch][:0frag_41]frag_24][Branch][Branch][:1frag_41]frag_37][C][:2frag_53][Ring1] | 4.365087 | null | null | 0.054794 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"C",
"C",
"N",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-0.45710206,
-0.13261637,
3.06312128
],
[
-1.16430262,
-0.70641455,
3.86608541
],
[
-1.98732375,
-1.25271521,
6.07568746
],
[
-2.00766773,
-1.39708576,
4.72867254
],
[
-2.84822797,
-1.82636566,
8.29554368
],
[
-2.85540349,
-1.... | null | null | null | null | null | null | null | null | null | null | null | null | 8.258691 | 2.078946 | 20.145001 | 44.84211 | |
optomechanics | ff8808bb87d15545fefd90f984825a8c | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(C#CC1=C([H])C([H])=C2N=C3C(=O)N([H])C(=O)N=C3N([H])C2=C1[H])=C([H])C([H])=C([H])C([H])=C([H])S[Au] | [:0frag_41][Ring1][C][:1frag_41][C][Ring2][Ring1][N][:1frag_41][Ring2][Ring2][Branch][=Branch][Ring2][:1frag_65][N][C][Ring1][C][:2frag_56][=Branch][N] | 3.624947 | null | null | 0.393082 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-0.31961217,
1.62077357,
2.88830802
],
[
-0.37292134,
2.53884523,
1.9069751
],
[
-0.4142396,
1.93593896,
4.26993565
],
[
-0.3500202,
1.01492793,
5.26313971
],
[
-0.43020674,
1.3459934,
6.63960052
],
[
-0.33965964,
0.4342921,
... | null | null | null | null | null | null | null | null | null | null | null | null | 8.640231 | 3.289739 | 19.682487 | 22.62965 | |
optomechanics | ff881dc071bc230b6157c1ad5a7eb60b | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(C#CC1=C([H])C([H])=C2N=C3C(=O)N([H])C(=O)N=C3N([H])C2=C1[H])=C([H])C([H])=C([H])C([H])=C([H])C([H])=C([H])S[Au] | [:0frag_41][Ring2][:1frag_41][Ring1][Ring2][Ring1][Ring1][:1frag_41][Ring2][Ring2][C][:0frag_41][C][C][Ring1][:1frag_65][N][C][:2frag_56][=Branch][Ring2] | 3.70681 | null | null | 0.284233 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
0.5300831,
0.2986011,
4.50178386
],
[
0.17102606,
0.13678217,
3.21207572
],
[
1.7861498,
0.81656744,
4.92022295
],
[
2.20717612,
1.00002606,
6.19947214
],
[
1.47444792,
0.71091096,
7.37807949
],
[
1.96323235,
0.9138124,
8.... | null | null | null | null | null | null | null | null | null | null | null | null | 9.682153 | 3.180717 | 22.55357 | 47.299222 | |
optomechanics | ff8af018fe3e3b59dc8883ddec8ff1ea | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(C#CC(=O)OC1=NC(Br)=NC([H])=C1Br)=C([H])C#CC([H])=C([H])S[Au] | [:0frag_41][N][:0frag_65][N][:1frag_41][C][:0frag_65][C][:1frag_10][C][:1frag_37][C][:0frag_38][pop][Ring2][:0frag_38][pop][C] | 4.482677 | null | null | 0.25163 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"O",
"N",
"C",
"N",
"C",
"C",
"C",
"Br",
"Br",
"Au",
"S",
"H",
"H",
"H",
"H",
"H"
] | [
[
0.17440026,
0.697637,
4.4757058
],
[
-0.06432915,
0.36042378,
3.19435425
],
[
2.10496229,
2.28530613,
5.20928351
],
[
1.20227845,
1.54461755,
4.87512634
],
[
3.12598575,
3.12338099,
5.63559281
],
[
3.33893981,
3.42851573,
... | null | null | null | null | null | null | null | null | null | null | null | null | 7.952628 | 2.696291 | 15.087324 | 35.48102 | |
optomechanics | ff976d370befd2a95e7d29f257a806c1 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(C#CC#CC1=C(F)C([H])=C2N=C3C(=O)N([H])C(=O)N=C3N([H])C2=C1F)=C([H])S[Au] | [:1frag_41][Ring1][:1frag_65][Ring1][:1frag_65][Ring1][:2frag_56][#Branch][:0frag_16][pop][Ring2][:0frag_16][pop][Ring1] | 3.996341 | null | null | 0.279743 | [
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"F",
"F",
"Au",
"S",
"H",
"H",
"H",
"H",
"H"
] | [
[
0.96403363,
-0.63667632,
3.00264078
],
[
1.63174245,
-1.07902047,
4.08572934
],
[
1.21529072,
-0.79956081,
5.37833056
],
[
0.85534936,
-0.55836062,
6.51835961
],
[
0.45736552,
-0.29254396,
7.76890295
],
[
0.08895125,
-0.046808... | null | null | null | null | null | null | null | null | null | null | null | null | 8.945244 | 2.516915 | 16.728849 | 80.704721 | |
phonon | ffb186a16a5d8537e85a621e5bd28b47 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN1-xTB (xtb --opt extreme --gfn 1) | GFN1-xTB (xtb --hess --gfn 1) | GFN1-xTB (dxtb) | NEGF | null | 300 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 18
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 6
n_explicit_pops = 3
include_descriptors = True
use_smarts_filters = True
[Pretrain]
... | [H]C1=C([H])C([H])=C2C(=C1[H])C([H])=C(C#CS[Au])C(Br)=C2C1=C2C([H])=C([H])C([H])=C([H])C2=C([H])C2=C([H])C([H])=C(C#CS[Au])C([H])=C21 | [:0frag_65][=Branch][:0frag_64][=N][:6frag_12][N][:0frag_38][pop][N][:0frag_65][O][C] | 3.178653 | null | null | 1.370022 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"Br",
"C",
"C",
"Au",
"S",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
... | [
[
2.5916559908581354,
1.1910237491123647,
2.885791489112401
],
[
1.4513765872904538,
1.0212868891709197,
2.4980431256382256
],
[
3.9214551362412102,
1.3843082777186455,
3.3267003730215046
],
[
5.001183101316449,
1.0800803229565354,
2.444488381073487
],
... | Debye model: E_D = 20 meV, gamma = -7 eV/Ang^2. Ref: Markussen, J. Chem. Phys. 139, 244101 (2013); Blaschke & Pauly, ACS Nano 19(36) (2025). | 0.114047 | [
0,
0.004400880075991154,
0.008801760151982307,
0.013202640227973461,
0.017603520303964615,
0.022004397585988045,
0.026405280455946922,
0.030806157737970352,
0.03520704060792923,
0.03960791602730751,
0.04400879517197609,
0.048409681767225266,
0.052810560911893845,
0.057211436331272125,
0.... | [
0,
2.5295190204596696e-13,
1.0026888173919613e-12,
2.2424421260852645e-12,
3.999232802559538e-12,
6.2821865765005924e-12,
9.001843541411869e-12,
1.2250207792607881e-11,
1.592446834119965e-11,
2.0137523593088957e-11,
2.4839276469013072e-11,
3.0133135570098446e-11,
3.580313823192682e-11,
4.2... | null | null | null | null | null | null | null | null | null | null | null | null | |
optomechanics | ffc964d9f377e343832873e3a0a29168 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(C#CC#CC1=C2C([H])=C([H])C([H])=C([H])C2=C(C#CS[Au])C2=C([H])C([H])=C([H])C([H])=C12)=C([H])C#CC(=O)ON1C([H])=C([H])C([H])=C1Cl | [:0frag_65][C][:8frag_64][#Branch][:1frag_65][Ring1][:0frag_65][Ring1][:0frag_41]frag_36][Ring2][:0frag_65][C][:1frag_10][C][:3frag_23][=Branch][:0frag_20][pop][#Branch] | 3.877451 | null | null | 0.422821 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"O",
"C",
"C",
"C",
"N",
"C",
"Cl",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
... | [
[
0.24521829,
1.85975319,
3.59226819
],
[
0.32953949,
1.91772282,
2.38356175
],
[
0.87953923,
5.15414434,
6.13502399
],
[
0.76291189,
5.00004567,
7.52798558
],
[
0.44432487,
3.78631692,
8.06363107
],
[
0.22488063,
2.66099821,
... | null | null | null | null | null | null | null | null | null | null | null | null | 10.754727 | 3.679202 | 23.916086 | 69.584799 | |
optomechanics | ffcb2393000ea77513e4d93b90905c10 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(C#CC([H])=C(S[Au])C([H])([H])[H])=C([H])C([H])=C([H])C([H])=C([H])C([H])=C([H])C1=C([H])C([H])=C2N=C3C(=O)N([H])C(=O)N=C3N([H])C2=C1[H] | [:1frag_50][C][:1frag_65][Branch][:1frag_41][Ring1][:1frag_41][Ring2][Ring1][:0frag_41][C][:1frag_41][C][Ring2][C][:2frag_56][Branch][=Branch][C] | 3.792334 | null | null | 0.064667 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
... | [
[
-0.12054945,
-1.75457809,
4.18308936
],
[
0.04989948,
-0.95985144,
3.1030804
],
[
0.37573918,
0.4913059,
3.20155422
],
[
-0.01057412,
-1.30914299,
5.49467759
],
[
0.07626614,
-0.94226812,
6.65134817
],
[
0.17535857,
-0.5168905... | null | null | null | null | null | null | null | null | null | null | null | null | 8.694982 | 2.021686 | 23.638391 | 50.232696 | |
optomechanics | ffcc27beebf2dd032b4a9168277bf467 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]OC(=O)N1C(=O)N=C2C(=NC3=C(Cl)C(N([H])[H])=C(C([H])=C(C([H])=C([H])C([H])=C([H])S[Au])C([H])([H])[H])C(C#N)=C3N2[H])C1=O | [:0frag_41][C][:1frag_41][Ring1][:1frag_50][Ring1][:2frag_56][#Branch][:0frag_46][pop][Ring2][:0frag_17][pop][=Branch][:0frag_20][pop][=Branch][:1frag_10][pop][Ring2] | 4.109138 | null | null | 0.13425 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"N",
"C",
"N",
"Cl",
"O",
"C",
"O",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-1.0631559,
-1.54391975,
4.12982868
],
[
-0.92001687,
-1.24569371,
2.82264311
],
[
-0.65176948,
-0.67339408,
5.18064372
],
[
-0.81672635,
-0.8071207,
6.51712535
],
[
-1.42407902,
-1.94801966,
8.58722608
],
[
-1.61226386,
-1.75... | null | null | null | null | null | null | null | null | null | null | null | null | 8.207671 | 1.714548 | 17.867657 | 75.352377 | |
optomechanics | ffcdaffcff34707ddb4eaaa9cf1bd6f6 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C1=NC(Cl)=NC(C#CC#CC([H])=C([H])C#CC([H])=C([H])C([H])=C([H])S[Au])=C1[H] | [:1frag_41][Ring1][:1frag_41][Ring1][:1frag_65][Ring1][:1frag_41][Ring1][:1frag_65][Ring1][:1frag_65][Ring1][:3frag_37][Ring1][:0frag_20][pop][Ring1] | 4.346847 | null | null | 0.443413 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"Cl",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-0.35705357,
-1.50287343,
2.8273185
],
[
-0.55999188,
-2.41297911,
3.79549891
],
[
-0.49260218,
-2.09894176,
5.18185732
],
[
-0.69331068,
-3.01001675,
6.16276314
],
[
-0.62451778,
-2.69978697,
7.51529684
],
[
-0.56425955,
-2.4... | null | null | null | null | null | null | null | null | null | null | null | null | 9.908693 | 4.525723 | 20.717261 | 21.011867 | |
phonon | ffd12d0cc740ad80adaa23e910e88c25 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN1-xTB (xtb --opt extreme --gfn 1) | GFN1-xTB (xtb --hess --gfn 1) | GFN1-xTB (dxtb) | NEGF | null | 300 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 18
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 6
n_explicit_pops = 3
include_descriptors = True
use_smarts_filters = True
[Pretrain]
... | [H]C1=C([H])C([H])=C2C(=C1[H])C([H])=C1C(C#CS[Au])=C([H])C([H])=C([H])C1=C2C1=C([H])C([H])=C([H])C(C([H])([H])OS[Au])=C1[H] | frag_44][C][:0frag_65]frag_15][Branch][:7frag_64][O][:1frag_0][=N][Ring2][:1frag_1]frag_55][=Branch] | 2.816667 | null | null | 0.778423 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"Au",
"S",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-1.7285819901759931,
0.7462806581713293,
3.5951330728289346
],
[
-1.6839468975139822,
0.11259413671307224,
2.5569046471362302
],
[
-6.792034923371607,
-1.0945104646061956,
7.1776742288741335
],
[
-6.794215464306241,
-0.36921656878888726,
8.39143228757052... | Debye model: E_D = 20 meV, gamma = -7 eV/Ang^2. Ref: Markussen, J. Chem. Phys. 139, 244101 (2013); Blaschke & Pauly, ACS Nano 19(36) (2025). | 0.217229 | [
0,
0.004400880075991154,
0.008801760151982307,
0.013202640227973461,
0.017603520303964615,
0.022004397585988045,
0.026405280455946922,
0.030806157737970352,
0.03520704060792923,
0.03960791602730751,
0.04400879517197609,
0.048409681767225266,
0.052810560911893845,
0.057211436331272125,
0.... | [
0,
1.456416503240257e-13,
5.828189493517488e-13,
1.3112509125376426e-12,
2.3298407474114935e-12,
3.359653267392959e-12,
5.223136593374145e-12,
7.128700407754707e-12,
9.345457567533355e-12,
1.1804822744321264e-11,
1.456742539096556e-11,
1.7718916611730862e-11,
2.1018908835657157e-11,
2.4715... | null | null | null | null | null | null | null | null | null | null | null | null | |
optomechanics | ffd2d303ae99e103bd0a36eb6f4df41c | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(C#CC([H])=C([H])C1=C([H])C([H])=C2N=C3C(=O)N([H])C(=O)N=C3N([H])C2=C1[H])=C([H])C([H])=C([H])S[Au] | [:0frag_41][Ring1][:0frag_41][Ring1][:1frag_65][Ring1][:1frag_41][Ring1][:2frag_56][=Branch] | 3.686909 | null | null | 0.489982 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-0.83761548,
-2.28045866,
3.82835329
],
[
-0.52394342,
-1.41373968,
2.84798171
],
[
-1.03544662,
-2.82949976,
6.20238654
],
[
-0.72383572,
-1.96218101,
5.20900092
],
[
-0.92085525,
-2.5141784,
7.54930845
],
[
-0.82255349,
-2.2... | null | null | null | null | null | null | null | null | null | null | null | null | 10.341856 | 4.181602 | 19.928814 | 44.90132 | |
optomechanics | ffd5dcab9d2ca02de7f9fb0c3d8c0bef | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(C#CC([H])=C([H])C([H])=C([H])C([H])=C([H])C#CC1=C([H])C([H])=C2N=C3C(=O)N([H])C(=O)N=C3N([H])C2=C1[H])=C([H])S[Au] | [:0frag_41][Branch][:1frag_65][C][:1frag_41][Ring2][C][Ring1][:1frag_41][C][C][:0frag_41][Ring1][Ring2][C][:1frag_65][Ring1][:2frag_56][Branch] | 3.946024 | null | null | 0.310885 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
2.42338633,
0.41076957,
3.8086144
],
[
1.91172192,
0.31453302,
2.56751205
],
[
1.65248677,
0.34705308,
4.96592072
],
[
0.96322995,
0.28814188,
5.96471654
],
[
0.16412901,
0.21638043,
7.09828698
],
[
0.62794236,
0.29351845,
... | null | null | null | null | null | null | null | null | null | null | null | null | 9.31685 | 2.885121 | 23.034194 | 42.666983 | |
phonon | ffdd7bd981cabba21111ea716227df14 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN1-xTB (xtb --opt extreme --gfn 1) | GFN1-xTB (xtb --hess --gfn 1) | GFN1-xTB (dxtb) | NEGF | null | 300 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 18
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 6
n_explicit_pops = 3
include_descriptors = True
use_smarts_filters = True
[Pretrain]
... | [H]C1=C([H])C([H])=C2C(=C1[H])C([H])=C(C#CS[Au])C(Br)=C2C1=C2C([H])=C([H])C([H])=C([H])C2=C([H])C2=C([H])C([H])=C(C#CS[Au])C([H])=C21 | [:0frag_65][=Branch][:0frag_64][=N][:6frag_12][N][:0frag_38][pop][N][:0frag_65][O] | 3.178653 | null | null | 1.36794 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"Br",
"C",
"C",
"Au",
"S",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
... | [
[
2.59195935721468,
1.190910476521275,
2.8856054074153246
],
[
1.4516598772156721,
1.021224623458915,
2.4978994901983143
],
[
3.9217685819478865,
1.3842272239838724,
3.3264649305599914
],
[
5.001500359658181,
1.0799824758769658,
2.444254073717195
],
[
... | Debye model: E_D = 20 meV, gamma = -7 eV/Ang^2. Ref: Markussen, J. Chem. Phys. 139, 244101 (2013); Blaschke & Pauly, ACS Nano 19(36) (2025). | 0.11422 | [
0,
0.004400880075991154,
0.008801760151982307,
0.013202640227973461,
0.017603520303964615,
0.022004397585988045,
0.026405280455946922,
0.030806157737970352,
0.03520704060792923,
0.03960791602730751,
0.04400879517197609,
0.048409681767225266,
0.052810560911893845,
0.057211436331272125,
0.... | [
0,
2.512185880328144e-13,
1.004974857672647e-12,
2.255976221804401e-12,
4.081335963634913e-12,
6.295891325641678e-12,
9.037327310112975e-12,
1.2240165478405451e-11,
1.5975004305501805e-11,
2.0259263017186058e-11,
2.503414489596345e-11,
3.0165488162925413e-11,
3.611402496495053e-11,
4.22086... | null | null | null | null | null | null | null | null | null | null | null | null | |
optomechanics | ffde14da6c87b1e554d9ebdba2be7927 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(S[Au])=C([H])C([H])=C([H])C([H])=C([H])C1=C([H])C(C#N)=C2N=C3C(=O)N([H])C(=O)N=C3N([H])C2=C1[H] | [:1frag_41][Ring1][:0frag_41][Ring1][:1frag_41][Ring1][:2frag_56][Ring2][:0frag_46][pop][Ring1] | 3.686788 | null | null | 0.193335 | [
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"N",
"C",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
1.58152708,
0.75651607,
2.70582574
],
[
1.90494857,
1.09419486,
3.96918081
],
[
3.58465667,
1.61058447,
5.67464812
],
[
3.24339221,
1.28848008,
4.40254064
],
[
4.92887595,
1.83877711,
6.07953039
],
[
5.38288324,
2.07778613,
... | null | null | null | null | null | null | null | null | null | null | null | null | 7.970553 | 2.149818 | 14.675304 | 61.642726 | |
optomechanics | ffe1bdaad5d4fb1ac78001d1460ee8e1 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C1=NC(=O)N(C([H])([H])[H])C(C([H])=C([H])C#CC([H])=C([H])C([H])=C([H])C#CC([H])=C([H])S[Au])=C1[H] | [:1frag_41][Ring1][:1frag_65][C][:1frag_41][Branch][:1frag_41][C][:1frag_65][Branch][:1frag_41][N][Ring1][:2frag_53][C][:0frag_5][pop][C] | 4.376001 | null | null | 0.287881 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"C",
"C",
"N",
"C",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-1.52037718,
-1.71676596,
2.25462028
],
[
-1.97759181,
-2.23785674,
3.40742021
],
[
-1.44915948,
-1.92620077,
4.65759689
],
[
-0.97616533,
-1.63922432,
5.73868395
],
[
-0.4388688,
-1.30515167,
6.97461589
],
[
-0.90919724,
-1.7... | null | null | null | null | null | null | null | null | null | null | null | null | 9.020759 | 3.095766 | 19.591841 | 37.807405 | |
optomechanics | ffe1dc3ae7f1e5e724a4a5cee8f6114c | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C1=NC(Cl)=NC(C#CC#CC([H])=C([H])C#CC([H])=C([H])C([H])=C([H])S[Au])=C1[H] | [:1frag_41][=N][:1frag_41][C][C][:1frag_65][=Branch][:1frag_41][=Branch][=Branch][:1frag_65][Branch][:1frag_65][C][:3frag_37][Ring1][:0frag_20][pop][Ring1] | 4.346847 | null | null | 0.443413 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"Cl",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-0.3570209,
-1.50286252,
2.82733244
],
[
-0.55996109,
-2.41296228,
3.79551787
],
[
-0.49257394,
-2.09891889,
5.18187499
],
[
-0.69328745,
-3.00999085,
6.16278265
],
[
-0.62449393,
-2.69976245,
7.5153167
],
[
-0.56424316,
-2.43... | null | null | null | null | null | null | null | null | null | null | null | null | 9.908696 | 4.525732 | 20.717283 | 21.011715 | |
optomechanics | ffec940f6f3a0bee863aef58359d4207 | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C1=NC(C([H])=C([H])C#CC#CC([H])=C([H])C#CC([H])=C([H])C([H])=C([H])S[Au])=C([H])C([H])=N1 | [:0frag_41][Ring1][:1frag_41][N][=Branch][Ring1][Ring1][:1frag_65][Ring1][:1frag_41][C][:1frag_65][C][:1frag_65][Branch][:1frag_41][C][:3frag_37][Ring1] | 4.43054 | null | null | 0.299125 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
1.77979687,
0.1570727,
4.16248254
],
[
1.05257084,
-0.00553346,
3.04440785
],
[
1.25647471,
-0.06221695,
5.46819245
],
[
1.97984856,
0.10917354,
6.59900833
],
[
1.46358139,
-0.09777909,
7.87265977
],
[
1.02231373,
-0.27106854,... | null | null | null | null | null | null | null | null | null | null | null | null | 9.547305 | 3.279988 | 20.746115 | 45.520533 | |
optomechanics | ffef97c6089f138a7f7fcbb4e0419cff | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C1=NC(C([H])=C([H])C#CC([H])=C([H])C#CC([H])=C([H])S[Au])=C(Cl)C([H])=N1 | [:1frag_41][Branch][:1frag_65][Ring1][:1frag_41][Ring1][:1frag_65][Ring1][:1frag_41][Ring1][:3frag_37][Branch][:0frag_20][pop][Ring2] | 4.368674 | null | null | 0.279067 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"Cl",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
0.50703747,
-0.93271245,
3.03613384
],
[
0.62012348,
-1.66229019,
4.15833931
],
[
0.63655334,
-1.08461283,
5.42572589
],
[
0.6442874,
-0.58664699,
6.53324882
],
[
0.64040902,
-0.01691009,
7.80109745
],
[
0.67015523,
-0.7456290... | null | null | null | null | null | null | null | null | null | null | null | null | 8.302689 | 2.870443 | 17.889547 | 29.438752 | |
phonon | fff759cd359969548a84d5b71ede6c2a | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN1-xTB (xtb --opt extreme --gfn 1) | GFN1-xTB (xtb --hess --gfn 1) | GFN1-xTB (dxtb) | NEGF | null | 300 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 18
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 6
n_explicit_pops = 3
include_descriptors = True
use_smarts_filters = True
[Pretrain]
... | [H]C1=C([H])C([H])=C2C(=C1[H])C([H])=C1C(C#CS[Au])=C([H])C([H])=C([H])C1=C2C1=C([H])C([H])=C([H])C(C([H])([H])OS[Au])=C1[H] | [:0frag_65]frag_15][Branch][:7frag_64][O][:1frag_0][Ring2][=Branch][Branch][:1frag_1][Ring1] | 2.816667 | null | null | 0.809358 | [
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"Au",
"S",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-1.7407672093683795,
0.7659297462874856,
3.5851911700007824
],
[
-1.697473160600191,
0.13208994934273896,
2.5470000382860434
],
[
-6.796889137276162,
-1.0791638717660488,
7.175481242157498
],
[
-6.797358692683891,
-0.35449826637455395,
8.389612781540157
... | Debye model: E_D = 20 meV, gamma = -7 eV/Ang^2. Ref: Markussen, J. Chem. Phys. 139, 244101 (2013); Blaschke & Pauly, ACS Nano 19(36) (2025). | 0.208926 | [
0,
0.004400880075991154,
0.008801760151982307,
0.013202640227973461,
0.017603520303964615,
0.022004397585988045,
0.026405280455946922,
0.030806157737970352,
0.03520704060792923,
0.03960791602730751,
0.04400879517197609,
0.048409681767225266,
0.052810560911893845,
0.057211436331272125,
0.... | [
0,
1.2423364474743043e-13,
4.972140320996798e-13,
1.119425515824779e-12,
1.989866604823476e-12,
3.1178655577474013e-12,
4.488521967299652e-12,
6.069143451692405e-12,
7.959439531080026e-12,
1.0065985371621178e-11,
1.2437818136534773e-11,
1.5060511865394588e-11,
1.7960263484773087e-11,
2.103... | null | null | null | null | null | null | null | null | null | null | null | null | |
optomechanics | fffe7f692be7b4b7db075b3fe2a9175b | baseline | 1.0.0 | [General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]
dataset_path... | frag_0 c1([*:1])c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_1 C(O[*:1])[*:1] 0
frag_2 O=C[*:1] 0
frag_3 C1([*:1])C([*:1])C([*:1])N([*:1])C([*:1])C1[*:1] 0
frag_4 O[*:1] 0
frag_5 C[*:1] 0
frag_6 n1c([*:1])c([*:1])c([*:1])c([*:1])c1[*:1] 0
frag_7 O=C(N(C[*:1])[*:1])[*:1] 0
frag_8 C(C[*:1])[*:1] 0
frag_9 O=C(N(O[*:1])[... | GFN2-xTB (xtb --opt extreme --gfn 2) | null | null | null | PTB (xtb --ptb --hess --raman 289.15 785) | 289.15 | # config.ini
[General]
encoding_type = GroupSelfies
max_seq_length = 30
grammar_path = <redacted>
rank_coefficient = 0.01
num_layers = 3
d_model = 512
model = transformer
[Dataset]
dataset_path = <redacted>
size = 300000
n_groups = 10
n_explicit_pops = 5
include_descriptors = True
use_smarts_filters = True
[Pretrain]... | [H]C(C#CC1=C(Cl)C([H])=C2N=C3C(=O)N(N([H])[H])C(=O)N=C3N([H])C2=C1I)=C([H])C([H])=C([H])S[Au] | [:1frag_41][Ring1][:1frag_41][Ring1][:1frag_65][Ring1][:2frag_56][Branch][:0frag_17][pop][Ring2][:0frag_34][pop][Ring2][:0frag_20][pop][=Branch] | 4.166476 | null | null | 0.283175 | [
"C",
"C",
"C",
"C",
"C",
"C",
"O",
"C",
"N",
"C",
"N",
"C",
"C",
"C",
"C",
"C",
"C",
"N",
"C",
"C",
"O",
"N",
"N",
"I",
"Cl",
"Au",
"S",
"H",
"H",
"H",
"H",
"H",
"H",
"H",
"H"
] | [
[
-0.06563648,
-0.98317885,
3.06536647
],
[
-0.08569931,
-1.67914452,
4.22019472
],
[
-0.13253021,
-3.09717925,
4.30562694
],
[
-0.13331174,
-3.79052639,
5.47213588
],
[
-0.09161527,
-3.18428949,
6.71892632
],
[
-0.05002109,
-2.... | null | null | null | null | null | null | null | null | null | null | null | null | 8.137455 | 2.714275 | 18.136142 | 28.423106 |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.