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10.1261_rna.079608.123 | Comparison of TRIBE and STAMP for identifying targets
of RNA binding proteins in human and Drosophila cells
KATHARINE C. ABRUZZI,1 CORRIE RATNER,1 and MICHAEL ROSBASH
Howard Hughes Medical Institute, Brandeis University, Waltham, Massachusetts 02454, USA
ABSTRACT
RNA binding proteins (RBPs) perform a myriad of func... |
10.1371_journal.pbio.3002472 | RESEARCH ARTICLE
Dynamics of bacterial recombination in the
human gut microbiome
Zhiru Liu1, Benjamin H. GoodID
1,2,3*
1 Department of Applied Physics, Stanford University, Stanford, California, United States of America,
2 Department of Biology, Stanford University, Stanford, California, United States of America, 3... |
10.1371_journal.pcbi.1011739 | RESEARCH ARTICLE
Explaining the flaws in human random
generation as local sampling with momentum
Lucas CastilloID
1*, Pablo Leo´ n-Villagra´ ID
2, Nick Chater3, Adam Sanborn1
1 Department of Psychology, University of Warwick, Coventry, United Kingdom, 2 Cognitive, Linguistic &
Psychological Sciences, Brown Univers... |
10.1371_journal.pdig.0000467 | RESEARCH ARTICLE
Clinical gait analysis using video-based pose
estimation: Multiple perspectives, clinical
populations, and measuring change
Jan StenumID
1,2, Melody M. Hsu1,3, Alexander Y. Pantelyat4, Ryan T. RoemmichID
1,2*
a1111111111
a1111111111
a1111111111
a1111111111
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OPEN ACCESS
Citation: Stenu... |
10.1126_science.abn5887 | A
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HHS Public Access
Author manuscript
Science. Author manuscript; available in PMC 2023 May 15.
Published in final edited form as:
Science. 2023 April 28; 380(6643): eabn5887. doi:10.1... |
10.1126_science.adh1720 | A
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Author manuscript
Science. Author manuscript; available in PMC 2023 August 04.
Published in final edited form as:
Science. 2023 July 28; 381(6656): eadh1720. doi:10... |
10.1371_journal.pbio.3002512 | RESEARCH ARTICLE
Cross-frequency coupling in cortico-
hippocampal networks supports the
maintenance of sequential auditory
information in short-term memory
Arthur Borderie1,2, Anne Caclin3, Jean-Philippe Lachaux3, Marcela Perrone-Bertollotti4,
Roxane S. Hoyer1, Philippe Kahane5, He´ lène Catenoix3,6, Barbara Tillmann... |
10.1371_journal.pbio.3002555 | RESEARCH ARTICLE
Specification of distinct cell types in a sensory-
adhesive organ important for metamorphosis
in tunicate larvae
Christopher J. Johnson1☯, Florian Razy-Krajka1☯, Fan Zeng2, Katarzyna M. Piekarz1,
Shweta Biliya3, Ute Rothba¨ cher2*, Alberto StolfiID
1*
1 School of Biological Sciences, Georgia Instit... |
10.1371_journal.pclm.0000325 | RESEARCH ARTICLE
Climate change impact on Spodoptera
frugiperda (Lepidoptera: Noctuidae) life cycle
in Mozambique
Telmo Cosme A. SumilaID
1*, Simone E. T. Ferraz1, Angelica Durigon2
1 Physics Department, Federal University of Santa Maria, Santa Maria, RS, Brazil, 2 Department of Plant
Science, Federal University of... |
10.1371_journal.pbio.3002514 | RESEARCH ARTICLE
Engineering of Cas12a nuclease variants with
enhanced genome-editing specificity
Peng Chen1☯, Jin Zhou1☯, Huan Liu1☯, Erchi Zhou2☯, Boxiao He1, Yankang Wu1,
Hongjian Wang1, Zaiqiao Sun1, Chonil Paek1,3, Jun Lei1, Yongshun Chen1*,
Xinghua Zhang2*, Lei YinID
1*
1 State Key Laboratory of Virology, Hub... |
10.1126_science.add6162 | H
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Published as: Science. 2023 July 07; 381(6653): 54–59.
Cortical polarity ensures its own asymmetric inheritance in the
stomatal lineage to pattern the leaf surface
Andrew Muroyama1,2,*, ... |
10.1093_nar_gkad331 | Published online 1 May 2023
Nucleic Acids Research, 2023, Vol. 51, Web Server issue W419–W426
https://doi.org/10.1093/nar/gkad331
PANGEA: a new gene set enrichment tool for
Drosophila and common research organisms
Yanhui Hu 1 , 2 ,* , Aram Comjean 1 , 2 , Helen Attrill 3 , Giulia Antonazzo 3 , Jim Thurm... |
10.1093_hmg_ddad091 | Human Molecular Genetics, 2023, Vol. 32, 16, 2600–2610
https://doi.org/10.1093/hmg/ddad091
Advance access publication date 1 June 2023
Original Article
Continuous, but not intermittent, regimens of hypoxia
prevent and reverse ataxia in a murine model of
Friedreich’s ataxia
Tslil Ast
1,2,3,4,†,‡, Hong Wang1,2,3,4,‡,... |
10.1126_sciadv.adg1671 | S C I E N C E A D VA N C E S | R E S E A R C H A R T I C L E
D E V E LO P M E N TA L B I O LO G Y
Atoh1 drives the heterogeneity of the pontine nuclei
neurons and promotes their differentiation
Sih-Rong Wu1,2, Jessica C. Butts2,3,4, Matthew S. Caudill1,2, Jean-Pierre Revelli2,3,
Ryan S. Dhindsa2,3, Mark A. Durham2,5,6... |
10.1126_science.adg6518 | A
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HHS Public Access
Author manuscript
Science. Author manuscript; available in PMC 2023 June 15.
Published in final edited form as:
Science. 2023 April 21; 380(6642): eadg6518. doi:10.... |
10.1093_nar_gkad501 | 7438–7450 Nucleic Acids Research, 2023, Vol. 51, No. 14
https://doi.org/10.1093/nar/gkad501
Published online 9 June 2023
Rarely acquired type II-A CRISPR-Cas spacers
mediate anti-viral immunity through the targeting of a
non-canonical PAM sequence
Claire T. K enne y 1 and Luciano A. Marraffini 1 , 2 , ... |
10.1126_scitranslmed.adh9917 | A
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HHS Public Access
Author manuscript
Sci Transl Med. Author manuscript; available in PMC 2023 September 14.
Published in final edited form as:
Sci Transl Med. 2023 July 26; 15(706): e... |
10.1093_mnras_stab3539 | Downloaded from orbit.dtu.dk on: Mar 07, 2025
Rapid build-up of the stellar content in the protocluster core SPT2349−56 at z = 4.3
Chapman, Ryley Hill Scott; Phadke, Kedar A.; Aravena, Manuel; Archipley, Melanie; Ashby, Matthew L N;
Béthermin, Matthieu; Canning, Rebecca E A; Gonzalez, Anthony; Greve, Thomas R; Gurura... |
10.1371_journal.pcbi.1011928 | RESEARCH ARTICLE
HormoneBayes: A novel Bayesian framework
for the analysis of pulsatile hormone
dynamics
Margaritis VoliotisID
1
S. Dhillo2, Krasimira Tsaneva-AtanasovaID
1*, Ali Abbara2, Julia K. Prague2,3,4, Johannes D. Veldhuis5, Waljit
1 Department of Mathematics and Living Systems Institute, College of Enginee... |
10.1093_nar_gkad439 | 6528–6539 Nucleic Acids Research, 2023, Vol. 51, No. 13
https://doi.org/10.1093/nar/gkad439
Published online 30 May 2023
NAR Breakthrough Article
Enhanced nonenzymatic RNA copying with in-situ
activation of short oligonucleotides
Dian Ding 1 , 2 , † , Stephanie J. Zhang 1 , 2 , † and Jack W. Szostak 1 , 2... |
10.1126_science.adc9498 | A
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Author manuscript
Science. Author manuscript; available in PMC 2023 June 16.
Published in final edited form as:
Science. 2023 April 07; 380(6640): eadc9498. doi:10.... |
10.1128_mbio.01039-23 | | Bacteriology | Research Article
Structural disruption of Ntox15 nuclease effector domains by
immunity proteins protects against type VI secretion system
intoxication in Bacteroidales
Dustin E. Bosch,1 Romina Abbasian,1 Bishal Parajuli,1 S. Brook Peterson,2,3 Joseph D. Mougous2,3,4
AUTHOR AFFILIATIONS See affilia... |
10.1128_mbio.00782-23 | | Editor’s Pick | Virology | Research Article
APOBEC3 degradation is the primary function of HIV-1 Vif
determining virion infectivity in the myeloid cell line THP-1
Terumasa Ikeda,1 Ryo Shimizu,1,2 Hesham Nasser,1,3 Michael A. Carpenter,4,5 Adam Z. Cheng,6,7 William L. Brown,6,7 Daniel Sauter,8
Reuben S. Harris4,5
... |
10.1093_ijrl_eeac041 | Utterly unbelievable: the discourse of ‘fake’ SOGI asylum claims as a form of
Utterly unbelievable: the discourse of ‘fake’ SOGI asylum claims as a form of
epistemic injustice
epistemic injustice
Nuno Ferreira
Publication date
Publication date
01-02-2023
Licence
Licence
This work is made available under the CC BY 4.... |
10.1126_science.adg7883 | A
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Author manuscript
Science. Author manuscript; available in PMC 2023 September 13.
Published in final edited form as:
Science. 2023 April 21; 380(6642): 301–308. doi... |
10.1371_journal.pbio.3002483 | RESEARCH ARTICLE
GABAergic regulation of striatal spiny
projection neurons depends upon their
activity state
Michelle Day1, Marziyeh Belal1, William C. Surmeier1, Alexandria Melendez2,
David Wokosin1, Tatiana Tkatch1,3, Vernon R. J. ClarkeID
1,3, D. James SurmeierID
1,3*
a1111111111
a1111111111
a1111111111
a111111... |
10.1371_journal.pgen.1011003 | RESEARCH ARTICLE
Kombucha Tea-associated microbes remodel
host metabolic pathways to suppress lipid
accumulation
Rachel N. DuMez-KornegayID
M. DeLoachID
2, Robert H. DowenID
1, Lillian S. BakerID
1,2,3,4*
2, Alexis J. Morris2, Whitney L.
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OPEN ACCESS
Ci... |
10.1128_jvi.00781-23 | | Virology | Full-Length Text
Human cytomegalovirus mediates APOBEC3B relocalization
early during infection through a ribonucleotide reductase-
independent mechanism
Elisa Fanunza,1,2 Adam Z. Cheng,3 Ashley A. Auerbach,1 Bojana Stefanovska,1,4 Sofia N. Moraes,3 James R. Lokensgard,5 Matteo
Biolatti,6... |
10.1371_journal.pbio.3002093 | RESEARCH ARTICLE
Fibroblast-induced mammary epithelial
branching depends on fibroblast contractility
Jakub Sumbal1,2,3, Silvia Fre2, Zuzana Sumbalova KoledovaID
1¤*
1 Masaryk University, Faculty of Medicine, Department of Histology and Embryology, Brno, Czech Republic,
2 Institut Curie, Laboratory of Genetics and D... |
10.1099_mgen.0.001019 | SHORT COMMUNICATION
Narunsky et al., Microbial Genomics 2023;9:001019
DOI 10.1099/mgen.0.001019
A conserved uORF in the ilvBNC mRNA of Corynebacterium
species regulates ilv operon expression
Aya Narunsky1†, Kumari Kavita1†, Shanker S. S. Panchapakesan1†, Megan E. Fris2‡ and Ronald R. Breaker1,2,3,*
Abstract
Computa... |
10.1093_nar_gkad633 | Published online 31 July 2023
Nucleic Acids Research, 2023, Vol. 51, No. 17 8957–8969
https://doi.org/10.1093/nar/gkad633
Linking folding dynamics and function of SAM / SAH
riboswitches at the single molecule level
Ting-Wei Liao 1 , Lin Huang 2 , Timothy J. Wilson 3 , Laura R. Ganser 1 , David M.J. Lill... |
10.1126_sciadv.aat9488 | M A T E R I A L S C I E N C E
Nanoscale strain engineering of giant pseudo-magnetic
fields, valley polarization, and topological channels
in graphene
C.-C. Hsu1*, M. L. Teague1*, J.-Q. Wang1*, N.-C. Yeh1,2†
The existence of nontrivial Berry phases associated with two inequivalent valleys in graphene provides intere... |
10.1126_science.add5327 | A
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Author manuscript
Science. Author manuscript; available in PMC 2023 July 03.
Published in final edited form as:
Science. 2023 May 12; 380(6645): eadd5327. doi:10.11... |
10.1126_sciimmunol.ade2860 | A
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Author manuscript
Sci Immunol. Author manuscript; available in PMC 2023 July 21.
Published in final edited form as:
Sci Immunol. 2023 April 21; 8(82): eade2860. doi... |
10.1093_molbev_msad085 | Evolution of the SARS-CoV-2 Mutational Spectrum
Jesse D. Bloom
,*,1,2,3 Annabel C. Beichman,2 Richard A. Neher
,4,5 and Kelley Harris2
1Basic Sciences Division and Computational Biology Program, Fred Hutchinson Cancer Center, Seattle, WA
2Department of Genome Sciences, University of Washington, Seattle, WA
3Howa... |
10.1093_nar_gkad329 | Published online 5 May 2023
Nucleic Acids Research, 2023, Vol. 51, No. 12 6355–6369
https://doi.org/10.1093/nar/gkad329
Translational fidelity screens in mammalian cells
reveal eIF3 and eIF4G2 as regulators of start codon
selectivity
Richard She 1 ,* , Jingchuan Luo 1 and Jonathan S. Weissman 1 , 2 , 3... |
10.1093_nar_gkad460 | Published online 1 June 2023
Nucleic Acids Research, 2023, Vol. 51, No. 13 e69
https://doi.org/10.1093/nar/gkad460
A method to generate capture baits for targeted
sequencing
Balaji Sundararaman 1 , 3 ,* , Alisa O. Vershinina 2 , Samantha Hershauer 1 , 3 ,
Joshua D. Kapp 2 , Shelby Dunn 2 , Beth Shapiro 1 ,... |
10.1371_journal.pcbi.1011899 | RESEARCH ARTICLE
Tipping points emerge from weak mutualism
in metacommunities
Jonas DenkID
1,2, Oskar HallatschekID
1,2,3*
1 Department of Physics, University of California, Berkeley, California, United States of America,
2 Department of Integrative Biology, University of California, Berkeley, California, United S... |
10.1126_science.adf4197 | A
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HHS Public Access
Author manuscript
Science. Author manuscript; available in PMC 2023 September 05.
Published in final edited form as:
Science. 2023 July 21; 381(6655): 319–324. doi:... |
10.1073_pnas.2300360120 | RESEARCH ARTICLE |
MICROBIOLOGY
OPEN ACCESS
Structure-based design of a SARS-CoV-2 Omicron-specific
inhibitor
Kailu Yanga,b,c,d,e
Tomas Kirchhausenf,g,h
, Richard A. Pfuetznera,b,c,d,e, Luis Esquiviesa,b,c,d,e,
, Chuchu Wanga,b,c,d,e, Alex J. B. Kreutzbergerf,g
, and Axel T. Brungera,b,c,d,e,1
, K. Ian Whitea,b,... |
10.1093_gbe_evad119 | GBE
Rapid Evolution of Glycan Recognition Receptors Reveals
an Axis of Host–Microbe Arms Races beyond Canonical
Protein–Protein Interfaces
Zoë A. Hilbert
Ellen M. Leffler
1,2,*, Paige E. Haffener1, Hannah J. Young1,2, Mara J.W. Schwiesow1,2,
1, and Nels C. Elde1,2,*
1Department of Human Genetics, University of Utah... |
10.1093_gbe_evad099 | GBE
Automatic Differentiation is no Panacea for Phylogenetic
Gradient Computation
Mathieu Fourment
Marc A. Suchard
1, Christiaan J. Swanepoel2,3, Jared G. Galloway4, Xiang Ji5, Karthik Gangavarapu6,
4,9,10,11,*
6,7,8,*, and Frederick A. Matsen IV
1Australian Institute for Microbiology and Infection, University of ... |
10.1103_physrevd.103.104047 | University of Southern Denmark
Constraints on black-hole charges with the 2017 EHT observations of M87*
Kocherlakota, Prashant; Rezzolla, Luciano; Falcke, Heino; Fromm, Christian M.; Kramer,
Michael; Mizuno, Yosuke; Nathanail, Antonios; Olivares, Hector; Younsi, Ziri; Akiyama,
Kazunori; Alberdi, Antxon; Alef, Walter;... |
10.1073_pnas.2309151120 | BRIEF REPORT |
IMMUNOLOGY AND INFLAMMATION
OPEN ACCESS
Innate immune responses yield tissue- specific bottlenecks
that scale with pathogen dose
, Katherine G. Daileya,b
Karthik Hullahallia,b,1
, and Matthew K. Waldora,b,c,1
Edited by Lawrence Steinman, Stanford University, Stanford, CA; received June 14, 2023; acc... |
10.1073_pnas.2301121120 | RESEARCH ARTICLE |
BIOCHEMISTRY
OPEN ACCESS
Gβγ activates PIP2 hydrolysis by recruiting and orienting PLCβ on
the membrane surface
Maria E. Falzonea,b
and Roderick MacKinnona,b,1
Edited by James Hurley, University of California, Berkeley, CA; received January 19, 2023; accepted April 6, 2023
Phospholipase C-βs ... |
10.1093_beheco_arad033 | Behavioral
Ecology
The official journal of the
ISBE
International Society for Behavioral Ecology
Behavioral Ecology (2023), 34(4), 642–652. https://doi.org/10.1093/beheco/arad033
Original article
Conditional indirect genetic effects of
caregivers on brood in the clonal raider ant
Patrick K. Piekarski,a, Stepha... |
10.1073_pnas.2301852120 | INAUGURAL ARTICLE |
BIOPHYSICS AND COMPUTATIONAL BIOLOGY
OPEN ACCESS
Quantification of gallium cryo-FIB milling damage in biological
lamellae
Bronwyn A. Lucasa,1,2,3
and Nikolaus Grigorieff a,b,1
This contribution is part of the special series of Inaugural Articles by members of the National Academy of Sciences e... |
10.1093_pnasnexus_pgad113 | PNAS Nexus, 2023, 2, 1–13
https://doi.org/10.1093/pnasnexus/pgad113
Advance access publication 30 March 2023
Research Report
Depicting pseudotime-lagged causality across single-cell
trajectories for accurate gene-regulatory inference
Caleb C. Reagor
a,b,c,*, Nicolas Velez-Angel
a and A. J. Hudspeth
a
aHoward Hug... |
10.1073_pnas.2219624120 | RESEARCH ARTICLE |
NEUROSCIENCE
OPEN ACCESS
Structural basis for severe pain caused by mutations in the
S4-S5 linkers of voltage-gated sodium channel NaV1.7
Goragot Wisedchaisria
, Tamer M. Gamal El-Dina, Ning Zhenga,b,1
, and William A. Catteralla,1
Contributed by William A. Catterall; received November 16, 2022... |
10.1073_pnas.2302191120 | RESEARCH ARTICLE |
IMMUNOLOGY AND INFLAMMATION
OPEN ACCESS
Circular RNA vaccine induces potent T cell responses
Laura Amayaa,b,1
, Zhijian Lid, Audrey Leec, Paul A. Wenderd,e
, Bali Pulendranc,2, and Howard Y. Changa,f,2
, Lilit Grigoryanc,1
Contributed by Howard Y. Chang; received February 9, 2023; accepted Apr... |
10.1073_pnas.2221809120 | RESEARCH ARTICLE | MEDICAL SCIENCES
OPEN ACCESS
Proxalutamide reduces SARS- CoV- 2 infection and associated
inflammatory response
Yuanyuan Qiaoa,b,c,1
Abhijit Paroliaa, Tongchen Hea, Caleb Chenga, Xuhong Caoa, Rui Wanga
Qianxiang Zhoug, Liandong Mag, Jonathan Z. Sextond,e,h,i,j, and Arul M. Chinnaiyana,b,c,k,l,2
, C... |
10.1073_pnas.2221064120 | RESEARCH ARTICLE |
BIOPHYSICS AND COMPUTATIONAL BIOLOGY
EVOLUTION
OPEN ACCESS
Passive endocytosis in model protocells
Stephanie J. Zhanga,b,1
and Anna Wangc,d,e,2
, Palapuravan Aneesf,g, Yamuna Krishnanf,g,h
, Lauren A. Lowec,d,e
, Thomas G. Faii,2
, Jack W. Szostaka,b,g,j,2
,
Edited by Gerald Joyce, Salk Inst... |
10.1073_pnas.2304730120 | RESEARCH ARTICLE |
GENETICS
OPEN ACCESS
split-intein Gal4 provides intersectional genetic labeling that
is repressible by Gal80
Ben Ewen-Campena,1
and Norbert Perrimona,f,2
, Haojiang Luanb,1, Jun Xua,c,1, Rohit Singhd,1, Neha Joshia, Tanuj Thakkara, Bonnie Bergerd,e, Benjamin H. Whiteb
,
Contributed by Norbert P... |
10.1073_pnas.2220537120 | RESEARCH ARTICLE |
BIOPHYSICS AND COMPUTATIONAL BIOLOGY
OPEN ACCESS
Multiple RNA- and DNA- binding proteins exhibit direct transfer
of polynucleotides with implications for target- site search
Wayne O. Hemphilla,b,c
, James A. Goodricha, and Thomas R. Cecha,b,c,1
, Regan Fenskea,b,c
, Calvin K. Voonga
Edited by... |
10.1073_pnas.2221163120 | RESEARCH ARTICLE |
EVOLUTION
OPEN ACCESS
Marginal specificity in protein interactions constrains evolution
of a paralogous family
Dia A. Ghosea
, Kaitlyn E. Przydziala, Emily M. Mahoneya
, and Michael T. Lauba,d,1
, Amy E. Keatinga,b,c
Edited by William DeGrado, University of California San Francisco, San Franci... |
10.1073_pnas.2217885120 | RESEARCH ARTICLE |
MEDICAL SCIENCES
OPEN ACCESS
Chromophore supply modulates cone function and survival
in retinitis pigmentosa mouse models
, Gayle B. Collinf, Vladimir J. Kefalovd,1,2
Yunlu Xuea,b,c,d,1
, Xiaomei Suna, Sean K. Wangb,c,e
, and Constance L. Cepkob,c,e,1
Contributed by Constance L. Cepko; received... |
10.1073_pnas.2301985120 | RESEARCH ARTICLE |
BIOCHEMISTRY
OPEN ACCESS
The membrane electric field regulates the PIP2-binding site to
gate the KCNQ1 channel
Venkata Shiva Mandalaa,b and Roderick MacKinnona,b,1
Edited by David Clapham, HHMI, Ashburn, VA; received February 3, 2023; accepted April 13, 2023
Voltage-dependent ion channels underl... |
10.1103_physrevd.107.023530 | Editors' Suggestion
Featured in Physics
PHYSICAL REVIEW D 107, 023530 (2023)
Joint analysis of Dark Energy Survey Year 3 data and CMB lensing
from SPT and Planck. II. Cross-correlation measurements
and cosmological constraints
C. Chang ,1,2 Y. Omori,1,2,3,4 E. J. Baxter,5 C. Doux,6 A. Choi,7 S. Pandey,6 A. Alarcon,... |
10.1073_pnas.2302325120 | RESEARCH ARTICLE |
BIOCHEMISTRY
OPEN ACCESS
Membrane protein isolation and structure determination
in cell-derived membrane vesicles
Xiao Taoa,b,1
, and Roderick MacKinnona,b,2
, Chen Zhaoa,b,1
Edited by Donald Engelman, Yale University, New Haven, CT; received February 9, 2023; accepted March 27, 2023
Integral ... |
10.1089_crispr.2023.0015 | The CRISPR Journal
Volume 6, Number 3, 2023
Mary Ann Liebert, Inc.
DOI: 10.1089/crispr.2023.0015
RESEARCH ARTICLE
The Transposon-Encoded Protein TnpB Processes Its Own
mRNA into xRNA for Guided Nuclease Activity
Suchita P. Nety,1–5 Han Altae-Tran,1–5 Soumya Kannan,1–5 F. Esra Demircioglu,1–5 Guilhem Faure,1–5
Seiichi... |
10.1073_pnas.2221613120 | RESEARCH ARTICLE |
GENETICS
OPEN ACCESS
The retrotransposon R2 maintains Drosophila ribosomal
DNA repeats
Jonathan O. Nelsona,b,1, Alyssa Slickoa,b
, and Yukiko M. Yamashitaa,b,c,1
Edited by R. Scott Hawley, Stowers Institute for Medical Research, Kansas City, MO; received December 20, 2022; accepted May 3, 2023
... |
10.1073_pnas.2306965120 | RESEARCH ARTICLE |
IMMUNOLOGY AND INFLAMMATION
OPEN ACCESS
IL- 6 trans- signaling in a humanized mouse model of scleroderma
, Kriti Agrawalc,d, Esen Sefikb, Anahi V. Odellb, Elizabeth Cavese, Nancy C. Kirkiles- Smithb, Valerie Horsleya,e, Monique Hinchclifff,
Ian D. Odella,b
Jordan S. Pobera,b,g
, Yuval Klugerc,d... |
10.1073_pnas.2218085120 | RESEARCH ARTICLE |
BIOCHEMISTRY
OPEN ACCESS
In diverse conditions, intrinsic chromatin condensates
have liquid-like material properties
Bryan A. Gibsona,b,1, Claudia Blaukopfc, Tracy Loud, Lifeng Chena,b, Lynda K. Doolittlea,b, Ilya Finkelsteine,f,g
and Michael K. Rosena,b,2
, Geeta J. Narlikard, Daniel W. Gerlichc... |
10.1073_pnas.2108421118 | BRCA1/Trp53 heterozygosity and replication stress
drive esophageal cancer development in a
mouse model
Ye Hea,1, Joshua Riverab,1, Miklos Diossyc,d, Haohui Duanb, Christian Bowman-Colina, Rachel Reeda, Rebecca Jenningse,
Jesse Novake, Stevenson V. Tranb, Elizabeth F. Cohena, David Szutsf, Anita Giobbie-Hurderg, Roder... |
10.1073_pnas.2300099120 | RESEARCH ARTICLE |
IMMUNOLOGY AND INFLAMMATION
OPEN ACCESS
B cell peripheral tolerance is promoted by cathepsin B protease
Marissa Y. Choua,b, Dan Liua,b, Jinping Ana,b, Ying Xua,b, and Jason G. Cystera,b,1
Contributed by Jason Cyster; received January 4, 2023; accepted March 14, 2023; reviewed by Robert Brink and ... |
10.1073_pnas.2221652120 | RESEARCH ARTICLE |
IMMUNOLOGY AND INFLAMMATION
OPEN ACCESS
Enhanced inhibition of MHC-I expression by SARS-CoV-2
Omicron subvariants
Miyu Moriyamaa, Carolina Lucasa, Valter Silva Monteiroa
, Yale SARS-CoV-2 Genomic Surveillance Initiative1, and Akiko Iwasakia,b,c,2
Contributed by Akiko Iwasaki; received December 2... |
10.1073_pnas.2221175120 | RESEARCH ARTICLE |
MEDICAL SCIENCES
OPEN ACCESS
Targeting SWI/SNF ATPases in H3.3K27M diffuse intrinsic
pontine gliomas
Mateus Motaa,b, Stefan R. Swehaa,b, Matt Puna,b,c,d, Siva Kumar Natarajana,b, Yujie Dinga,b, Chan Chunge
Alexander R. Judkinsf, Susanta Samajdarg, Xuhong Caoh, Lanbo Xiaoh, Abhijit Paroliah, Arul M... |
10.1021_acssynbio.3c00078 | pubs.acs.org/synthbio
This article is licensed under CC-BY 4.0
Research Article
Tuning Methylation-Dependent Silencing Dynamics by Synthetic
Modulation of CpG Density
Yitong Ma, Mark W. Budde, Junqin Zhu, and Michael B. Elowitz*
Cite This: ACS Synth. Biol. 2023, 12, 2536−2545
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10.1073_pnas.2301987120 | RESEARCH ARTICLE |
MICROBIOLOGY
OPEN ACCESS
A role for the Gram- negative outer membrane in bacterial
shape determination
Elayne M. Fivensona
, Andrea Vettigera, Marios F. Sardisa
, Patricia D. A. Rohsa
, Grasiela Torresa, Alison Forchoha, and Thomas G. Bernhardta,b,1
Edited by Thomas Silhavy, Princeton Universi... |
10.1073_pnas.2305556120 | RESEARCH ARTICLE | BIOCHEMISTRY
OPEN ACCESS
Changing protein–DNA interactions promote ORC binding- site
exchange during replication origin licensing
Annie Zhanga,b
, and Stephen P. Bella,b,1
, Larry J. Friedmanc
, Jeff Gellesc,1
Edited by James Berger, Johns Hopkins University, Baltimore, MD; received April 17, 2... |
10.1073_pnas.2220576120 | RESEARCH ARTICLE |
GENETICS
OPEN ACCESS
Derepression of Y-linked multicopy protamine-like genes interferes
with sperm nuclear compaction in D. melanogaster
Jun I. Parka,b,c
, and Yukiko M. Yamashitad,e,f,1
, George W. Belld
Edited by Mariana Wolfner, Cornell University, Ithaca, NY; received December 3, 2022; acce... |
10.1016_j.jmb.2023.168145 | A
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Author manuscript
J Mol Biol. Author manuscript; available in PMC 2023 July 01.
Published in final edited form as:
J Mol Biol. 2023 July 01; 435(13): 168145. doi:10... |
10.1084_jem.20221816 | ARTICLE
Dietary protein shapes the profile and repertoire of
intestinal CD4+ T cells
Ainsley Lockhart1, Aubrey Reed1, Tiago Rezende de Castro1, Calvin Herman1, Maria Cecilia Campos Canesso1, and Daniel Mucida1,2
The intestinal immune system must tolerate food antigens to avoid allergy, a process requiring CD4+... |
10.1021_jacs.3c01003 | pubs.acs.org/JACS
Article
Environmentally Ultrasensitive Fluorine Probe to Resolve Protein
Conformational Ensembles by 19F NMR and Cryo-EM
Yun Huang,* Krishna D. Reddy, Clay Bracken, Biao Qiu, Wenhu Zhan, David Eliezer,*
and Olga Boudker*
Cite This: J. Am. Chem. Soc. 2023, 145, 8583−8592
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10.1073_pnas.2306564120 | RESEARCH ARTICLE |
IMMUNOLOGY AND INFLAMMATION
OPEN ACCESS
Contribution of the IGCR1 regulatory element and
the 3′Igh CTCF- binding elements to regulation of Igh
V(D)J recombination
Zhuoyi Lianga,b,c,1,2, Lijuan Zhaoa,b,c,1, Adam Yongxin Yea,b,c,1, Sherry G. Lina,b,c,1, Yiwen Zhanga,b,c, Chunguang Guoa,b,c, Hai- Qia... |
10.1073_pnas.2300052120 | RESEARCH ARTICLE |
NEUROSCIENCE
OPEN ACCESS
Glial dysregulation in the human brain in fragile X-associated
tremor/ataxia syndrome
Caroline M. Diasa,b,c,d,1, Biju Issace, Liang Sune, Abigail Lukowiczd, Maya Talukdarb,f
Shira Rockowitzb,e, and Christopher A. Walshb,c,i,j,1
, Michael B. Millerb,h
, Shyam K. Akulab,g
... |
10.1016_j.cell.2023.06.002 | A
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Author manuscript
Cell. Author manuscript; available in PMC 2023 July 27.
Published in final edited form as:
Cell. 2023 July 20; 186(15): 3148–3165.e20. doi:10.1016... |
10.1016_j.cell.2023.03.031 | A
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Author manuscript
Cell. Author manuscript; available in PMC 2023 July 05.
Published in final edited form as:
Cell. 2023 May 11; 186(10): 2127–2143.e22. doi:10.1016/... |
10.1073_pnas.2221415120 | RESEARCH ARTICLE
NEUROSCIENCE
Reward expectations direct learning and drive operant matching
in Drosophila
Adithya E. Rajagopalana,b ID , Ran Darshana,c, Karen L. Hibbarda, James E. Fitzgeralda, and Glenn C. Turnera,1 ID
Edited by Leslie C. Griffith, Brandeis University, Waltham, MA; received January 3, 2023; accepte... |
10.1073_pnas.2217096120 | RESEARCH ARTICLE |
BIOPHYSICS AND COMPUTATIONAL BIOLOGY
OPEN ACCESS
Structure of WNT inhibitor adenomatosis polyposis
coli down-regulated 1 (APCDD1), a cell-surface
lipid-binding protein
Fu-Lien Hsieha,b,1, Tao-Hsin Changa,b,1,2
, and Jeremy Nathansa,b,f,g,2
, Sandra B. Gabellic,d,e,3
Contributed by Jeremy Nathan... |
10.1016_j.isci.2022.105093 | iScience
ll
OPEN ACCESS
Article
NOX-like ROS production by glutathione
reductase
Julia M. Diaz,
Xinying Shi
j2diaz@ucsd.edu
Highlights
Glutathione reductase
expressed from a
microbial phototroph is
found to produce ROS
This promiscuous reaction
shows similar kinetics and
inhibition as NOX-derived
ROS
The GR pat... |
10.1016_j.aim.2022.108778 | Burness, T., & Guralnick, R. (2022). Fixed point ratios for finite
primitive groups and applications. Advances in Mathematics, 411(A),
Article 108778. https://doi.org/10.1016/j.aim.2022.108778
Publisher's PDF, also known as Version of record
License (if available):
CC BY
Link to published version (if available):
10.... |
10.1080_15476286.2023.2231280 | RNA BIOLOGY
2023, VOL. 20, NO. 1, 444–456
https://doi.org/10.1080/15476286.2023.2231280
RESEARCH PAPER
SARS-CoV-2 Nsp1 mediated mRNA degradation requires mRNA interaction with the
ribosome
Soraya I. Shehata
a and Roy Parker
b
aDepartment of Molecular, Cellular, and Developmental Biology... |
10.1021_acscentsci.2c01385 | http://pubs.acs.org/journal/acscii
Research Article
Enzymatic Fluoromethylation Enabled by the
S‑Adenosylmethionine Analog Te-
Adenosyl‑L‑(fluoromethyl)homotellurocysteine
Syam Sundar Neti, Bo Wang,* David F. Iwig, Elizabeth L. Onderko, and Squire J. Booker*
Cite This: ACS Cent. Sci. 2023, 9, 905−914
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10.1016_j.celrep.2023.112408 | A
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Author manuscript
Cell Rep. Author manuscript; available in PMC 2023 August 22.
Published in final edited form as:
Cell Rep. 2023 May 30; 42(5): 112408. doi:10.1016... |
10.1016_j.cell.2023.07.039 | Phage-assisted evolution and protein engineering
yield compact, efficient prime editors
Resource
Graphical abstract
Authors
Jordan L. Doman, Smriti Pandey,
Monica E. Neugebauer, ..., Jakub Tolar,
Mark J. Osborn, David R. Liu
Correspondence
drliu@fas.harvard.edu
In brief
Phage-assisted continuous evolution and
prote... |
10.1016_j.str.2023.03.011 | A
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Author manuscript
Structure. Author manuscript; available in PMC 2023 May 15.
Published in final edited form as:
Structure. 2023 May 04; 31(5): 518–528.e6. doi:10.1... |
10.1073_pnas.2220528120 | RESEARCH ARTICLE |
BIOPHYSICS AND COMPUTATIONAL BIOLOGY
OPEN ACCESS
PRC2 direct transfer from G-quadruplex RNA to dsDNA has
implications for RNA-binding chromatin modifiers
Wayne O. Hemphilla,b
, and Thomas R. Cecha,b,1
, Anne R. Goodinga,b
, Regan Fenskea,b
Edited by John Kuriyan, Vanderbilt University, Nashvil... |
10.1073_pnas.2220159120 | RESEARCH ARTICLE |
CELL BIOLOGY
OPEN ACCESS
Osteolectin increases bone elongation and body length
by promoting growth plate chondrocyte proliferation
Jingzhu Zhanga
, Liming Dua, Bethany Davisa, Zhimin Gua,1, Junhua Lyua, Zhiyu Zhaoa, Jian Xua
, and Sean J. Morrisona,b,c,2
Contributed by Sean J. Morrison; receive... |
10.1021_acschembio.3c00413 | pubs.acs.org/acschemicalbiology
This article is licensed under CC-BY 4.0
Articles
Direct Modulators of K‑Ras−Membrane Interactions
Johannes Morstein,* Rebika Shrestha, Que N. Van, César A. López, Neha Arora, Marco Tonelli,
Hong Liang, De Chen, Yong Zhou, John F. Hancock, Andrew G. Stephen, Thomas J. Turbyville,
and ... |
10.1002_advs.202300445 | RESEARCH ARTICLE
www.advancedscience.com
Cellular Composition and 5hmC Signature Predict the
Treatment Response of AML Patients to Azacitidine
Combined with Chemotherapy
Guanghao Liang, Linchen Wang, Qiancheng You, Kirk Cahill, Chuanyuan Chen,
Wei Zhang, Noreen Fulton, Wendy Stock, Olatoyosi Odenike,* Chuan He,* and... |
10.1021_acscentsci.3c00547 | http://pubs.acs.org/journal/acscii
This article is licensed under CC-BY 4.0
Article
Molecular Crowding Facilitates Ribozyme-Catalyzed RNA Assembly
Saurja DasGupta,* Stephanie Zhang, and Jack W. Szostak*
Cite This: ACS Cent. Sci. 2023, 9, 1670−1678
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*sı S... |
10.1016_j.cell.2023.05.028 | A
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Author manuscript
Cell. Author manuscript; available in PMC 2023 August 18.
Published in final edited form as:
Cell. 2023 June 22; 186(13): 2765–2782.e28. doi:10.10... |
10.1016_j.jbc.2023.105073 | RESEARCH ARTICLE
Mitochondrial double-stranded RNA triggers induction
of the antiviral DNA deaminase APOBEC3A and nuclear
DNA damage
, Rémi Buisson4,5
Received for publication, May 8, 2023, and in revised form, June 27, 2023 Published, Papers in Press, July 19, 2023,
https://doi.org/10.1016/j.jbc.2023.105073
Chloe W... |
10.1016_j.isci.2021.102204 | UC San Diego
UC San Diego Previously Published Works
Title
Sensitivity of the mangrove-estuarine microbial community to aquaculture effluent
Permalink
https://escholarship.org/uc/item/3229890c
Journal
iScience, 24(3)
ISSN
2589-0042
Authors
Erazo, Natalia G
Bowman, Jeff S
Publication Date
2021-03-01
DOI
1... |
10.1016_j.jbc.2023.105109 | RESEARCH ARTICLE
Structural insight into G-protein chaperone-mediated
maturation of a bacterial adenosylcobalamin-dependent
mutase
, Daphne A. Faber2
Received for publication, May 23, 2023, and in revised form, July 20, 2023 Published, Papers in Press, July 28, 2023,
https://doi.org/10.1016/j.jbc.2023.105109
Frances... |
10.1016_j.xgen.2023.100356 | Article
Schizophrenia-associated somatic copy-number
variants from 12,834 cases reveal recurrent NRXN1
and ABCB11 disruptions
Graphical abstract
Authors
Eduardo A. Maury, Maxwell A. Sherman,
Giulio Genovese, ..., Jonathan Sebat,
Eunjung A. Lee, Christopher A. Walsh
Correspondence
christopher.walsh@childrens.harvar... |
10.1021_acscentsci.3c00160 | http://pubs.acs.org/journal/acscii
Research Article
Macrocyclization and Backbone Rearrangement During RiPP
Biosynthesis by a SAM-Dependent Domain-of-Unknown-Function
692
Richard S. Ayikpoe, Lingyang Zhu, Jeff Y. Chen, Chi P. Ting, and Wilfred A. van der Donk*
Cite This: ACS Cent. Sci. 2023, 9, 1008−1018
Read Onlin... |
10.1021_acschembio.2c00840 | pubs.acs.org/acschemicalbiology
Articles
Trapoxin A Analogue as a Selective Nanomolar Inhibitor of HDAC11
Thanh Tu Ho, Changmin Peng, Edward Seto, and Hening Lin*
Cite This: ACS Chem. Biol. 2023, 18, 803−809
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*sı Supporting Information
ABSTRACT: Histone ... |
10.1093_gbe_evad100 | GBE
No Transcriptional Compensation for Extreme Gene
Dosage Imbalance in Fragmented Bacterial
Endosymbionts of Cicadas
Noah Spencer
1, Piotr Łukasik2,3, Mariah Meyer2,4, Claudio Veloso5, and John P. McCutcheon1,2,6,*
1Biodesign Center for Mechanisms of Evolution and School of Life Sciences, Arizona State University... |
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