Update app.py
Browse files
app.py
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@@ -4,6 +4,27 @@ from tensorflow.keras.models import load_model
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from tensorflow.keras import backend as K
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from PIL import Image
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from huggingface_hub import hf_hub_download
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# -----------------------
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# Custom metric
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@@ -46,15 +67,15 @@ def predict(img):
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orig_size = img.size # (width, height)
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# Resize image for model
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x = np.expand_dims(np.expand_dims(
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# Predict mask
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pred = model.predict(x)[0]
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tumor_present = pred.max() > 0.7
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if tumor_present:
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mask = (
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mask_img = Image.fromarray(mask.squeeze()).convert("L")
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# Resize mask back to original image size
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from tensorflow.keras import backend as K
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from PIL import Image
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from huggingface_hub import hf_hub_download
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import cv2
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# -----------------------
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# Preprocessing
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# -----------------------
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def preprocess(img):
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img_gray = np.array(img.convert("L")) # grayscale
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img_resized = cv2.resize(img_gray, (256, 256)) # resize to model input
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clahe = cv2.createCLAHE(clipLimit=2.0, tileGridSize=(8,8))
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img_clahe = clahe.apply(img_resized) # enhance contrast
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img_norm = img_clahe / 255.0 # normalize to [0,1]
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return img_norm
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from skimage import measure
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def remove_small_blobs(mask, min_size=50):
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labels = measure.label(mask)
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for region in measure.regionprops(labels):
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if region.area < min_size:
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mask[labels == region.label] = 0
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return mask
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# -----------------------
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# Custom metric
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orig_size = img.size # (width, height)
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# Resize image for model
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img_processed = preprocess(img) # preprocess function
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x = np.expand_dims(np.expand_dims(img_processed, -1), 0)
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# Predict mask
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pred = model.predict(x)[0]
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tumor_present = pred.max() > 0.7
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if tumor_present:
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mask = remove_small_blobs(mask, min_size=50)
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mask_img = Image.fromarray(mask.squeeze()).convert("L")
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# Resize mask back to original image size
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