services:
  streamlit:
    build:
      context: .
      dockerfile: docker/streamlit.Dockerfile
    ports:
      - "8501:8501"
    environment:
      AUTH_ENABLED: "false"
      BACKEND_API_URL: http://api:8000
      DATABASE_URL: postgresql+psycopg://postgres:postgres@db:5432/omnibimol
      REDIS_URL: redis://redis:6379/0
    depends_on:
      - api

  api:
    build:
      context: .
      dockerfile: docker/backend.Dockerfile
    ports:
      - "8000:8000"
    environment:
      ENVIRONMENT: development
      AUTH_ENABLED: "false"
      DATABASE_URL: postgresql+psycopg://postgres:postgres@db:5432/omnibimol
      REDIS_URL: redis://redis:6379/0
      DOCKING_ENABLED: "true"
      DOCKING_MODE_DEFAULT: real
      DOCKING_ENGINE: vina
      DOCKING_CACHE_DIR: /var/lib/omnibimol/docking-cache
      DOCKING_TIMEOUT_SECONDS: "900"
      DOCKING_VINA_BINARY: vina
      DOCKING_WORKER_CONCURRENCY: "1"
      PROTEIN_PATHWAY_ENABLED: "true"
      PROTEIN_PATHWAY_OUTPUT_ROOT: /var/lib/omnibimol/protein-pathway-pipeline
      PROTEIN_PATHWAY_JOB_TIMEOUT_SECONDS: "1800"
      PROTEIN_PATHWAY_WORKER_CONCURRENCY: "1"
    depends_on:
      - db
      - redis
    volumes:
      - protein_pathway_artifacts:/var/lib/omnibimol/protein-pathway-pipeline

  worker:
    build:
      context: .
      dockerfile: docker/backend.Dockerfile
    command: python -m backend.workers.docking_worker
    environment:
      ENVIRONMENT: development
      AUTH_ENABLED: "false"
      DATABASE_URL: postgresql+psycopg://postgres:postgres@db:5432/omnibimol
      REDIS_URL: redis://redis:6379/0
      DOCKING_ENABLED: "true"
      DOCKING_MODE_DEFAULT: real
      DOCKING_ENGINE: vina
      DOCKING_CACHE_DIR: /var/lib/omnibimol/docking-cache
      DOCKING_TIMEOUT_SECONDS: "900"
      DOCKING_VINA_BINARY: vina
      DOCKING_WORKER_CONCURRENCY: "1"
    depends_on:
      - db
      - redis
    volumes:
      - docking_cache:/var/lib/omnibimol/docking-cache

  protein_pathway_worker:
    build:
      context: .
      dockerfile: docker/backend.Dockerfile
    command: python -m backend.workers.protein_pathway_pipeline_worker
    environment:
      ENVIRONMENT: development
      AUTH_ENABLED: "false"
      DATABASE_URL: postgresql+psycopg://postgres:postgres@db:5432/omnibimol
      REDIS_URL: redis://redis:6379/0
      PROTEIN_PATHWAY_ENABLED: "true"
      PROTEIN_PATHWAY_OUTPUT_ROOT: /var/lib/omnibimol/protein-pathway-pipeline
      PROTEIN_PATHWAY_JOB_TIMEOUT_SECONDS: "1800"
      PROTEIN_PATHWAY_WORKER_CONCURRENCY: "1"
    depends_on:
      - db
      - redis
    volumes:
      - protein_pathway_artifacts:/var/lib/omnibimol/protein-pathway-pipeline

  genome_analysis_worker:
    build:
      context: .
      dockerfile: docker/backend.Dockerfile
    command: python -m backend.workers.genome_analysis_worker
    environment:
      ENVIRONMENT: development
      AUTH_ENABLED: "false"
      DATABASE_URL: postgresql+psycopg://postgres:postgres@db:5432/omnibimol
      REDIS_URL: redis://redis:6379/0
      GENOME_ANALYSIS_JOB_TIMEOUT_SECONDS: "900"
      GENOME_ANALYSIS_WORKER_CONCURRENCY: "1"
    depends_on:
      - db
      - redis

  db:
    image: postgres:16
    environment:
      POSTGRES_DB: omnibimol
      POSTGRES_USER: postgres
      POSTGRES_PASSWORD: postgres
    ports:
      - "5432:5432"
    volumes:
      - postgres_data:/var/lib/postgresql/data

  redis:
    image: redis:7
    ports:
      - "6379:6379"

volumes:
  postgres_data:
  docking_cache:
  protein_pathway_artifacts: