Created using Colab

notebooks/01_model_training_and_fine_tuning.ipynb

@@ -5,7 +5,7 @@
     "colab": {
       "provenance": [],
       "gpuType": "T4",
-      "authorship_tag": "ABX9TyOnEuzqYzxulPO+99bBQJml",
+      "authorship_tag": "ABX9TyMWASc8DOLZJMwr1QxrDytO",
       "include_colab_link": true
     },
     "kernelspec": {
@@ -51,18 +51,18 @@
       "metadata": {
         "id": "OwBert5NpQwF"
       },
-      "execution_count": null,
+      "execution_count": 4,
       "outputs": []
     },
     {
       "cell_type": "code",
-      "execution_count": null,
+      "execution_count": 5,
       "metadata": {
         "colab": {
           "base_uri": "https://localhost:8080/"
         },
         "id": "IGGkAlCRNlro",
-        "outputId": "69681eec-4dca-43fc-f0c3-489d8d514d71"
+        "outputId": "36c9affa-0817-480a-9288-d20c8417c022"
       },
       "outputs": [
         {
@@ -75,6 +75,10 @@
         }
       ],
       "source": [
+        "try:\n",
+        "    from google.colab import userdata\n",
+        "except Exception as e:\n",
+        "    print('Not in Colab Environment')\n",
         "import torch\n",
         "import torch.nn as nn\n",
         "import torch.optim as optim\n",
@@ -708,10 +712,22 @@
         "print(\"✅ Token securely loaded into environment!\")"
       ],
       "metadata": {
-        "id": "Uq2QnjXJZr_g"
+        "colab": {
+          "base_uri": "https://localhost:8080/"
+        },
+        "id": "Uq2QnjXJZr_g",
+        "outputId": "12eda826-b10a-4f47-b131-2f1fab2061b7"
       },
-      "execution_count": null,
-      "outputs": []
+      "execution_count": 6,
+      "outputs": [
+        {
+          "output_type": "stream",
+          "name": "stdout",
+          "text": [
+            "✅ Token securely loaded into environment!\n"
+          ]
+        }
+      ]
     },
     {
       "cell_type": "code",
@@ -742,10 +758,79 @@
         "echo \"✅ Successfully created GitHub Release and uploaded weights!\""
       ],
       "metadata": {
-        "id": "o4_40DdsZhIb"
+        "colab": {
+          "base_uri": "https://localhost:8080/"
+        },
+        "id": "o4_40DdsZhIb",
+        "outputId": "85d533b0-9d70-4c3c-8c02-dd238a30caf5"
       },
-      "execution_count": null,
-      "outputs": []
+      "execution_count": 7,
+      "outputs": [
+        {
+          "output_type": "stream",
+          "name": "stdout",
+          "text": [
+            "Hit:1 https://cli.github.com/packages stable InRelease\n",
+            "Hit:2 https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/ InRelease\n",
+            "Hit:3 http://archive.ubuntu.com/ubuntu jammy InRelease\n",
+            "Hit:4 http://security.ubuntu.com/ubuntu jammy-security InRelease\n",
+            "Hit:5 https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2204/x86_64  InRelease\n",
+            "Hit:6 http://archive.ubuntu.com/ubuntu jammy-updates InRelease\n",
+            "Hit:7 https://r2u.stat.illinois.edu/ubuntu jammy InRelease\n",
+            "Hit:8 http://archive.ubuntu.com/ubuntu jammy-backports InRelease\n",
+            "Hit:9 https://ppa.launchpadcontent.net/deadsnakes/ppa/ubuntu jammy InRelease\n",
+            "Hit:10 https://ppa.launchpadcontent.net/graphics-drivers/ppa/ubuntu jammy InRelease\n",
+            "Hit:11 https://ppa.launchpadcontent.net/ubuntugis/ppa/ubuntu jammy InRelease\n",
+            "Reading package lists...\n",
+            "Building dependency tree...\n",
+            "Reading state information...\n",
+            "57 packages can be upgraded. Run 'apt list --upgradable' to see them.\n",
+            "Reading package lists...\n",
+            "Building dependency tree...\n",
+            "Reading state information...\n",
+            "The following packages will be upgraded:\n",
+            "  gh\n",
+            "1 upgraded, 0 newly installed, 0 to remove and 56 not upgraded.\n",
+            "Need to get 14.4 MB of archives.\n",
+            "After this operation, 94.2 kB of additional disk space will be used.\n",
+            "Get:1 https://cli.github.com/packages stable/main amd64 gh amd64 2.93.0 [14.4 MB]\n",
+            "Fetched 14.4 MB in 0s (45.7 MB/s)\n",
+            "(Reading database ... \r(Reading database ... 5%\r(Reading database ... 10%\r(Reading database ... 15%\r(Reading database ... 20%\r(Reading database ... 25%\r(Reading database ... 30%\r(Reading database ... 35%\r(Reading database ... 40%\r(Reading database ... 45%\r(Reading database ... 50%\r(Reading database ... 55%\r(Reading database ... 60%\r(Reading database ... 65%\r(Reading database ... 70%\r(Reading database ... 75%\r(Reading database ... 80%\r(Reading database ... 85%\r(Reading database ... 90%\r(Reading database ... 95%\r(Reading database ... 100%\r(Reading database ... 122402 files and directories currently installed.)\r\n",
+            "Preparing to unpack .../archives/gh_2.93.0_amd64.deb ...\r\n",
+            "Unpacking gh (2.93.0) over (2.92.0) ...\r\n",
+            "Setting up gh (2.93.0) ...\r\n",
+            "Processing triggers for man-db (2.10.2-1) ...\r\n",
+            "Creating GitHub Release v1.0.0...\n",
+            "https://github.com/mobadara/precision-diagnostics-xai/releases/tag/v1.0.0\n",
+            "✅ Successfully created GitHub Release and uploaded weights!\n"
+          ]
+        },
+        {
+          "output_type": "stream",
+          "name": "stderr",
+          "text": [
+            "8+1 records in\n",
+            "8+1 records out\n",
+            "4528 bytes (4.5 kB, 4.4 KiB) copied, 0.0791345 s, 57.2 kB/s\n",
+            "\n",
+            "WARNING: apt does not have a stable CLI interface. Use with caution in scripts.\n",
+            "\n",
+            "W: Skipping acquire of configured file 'main/source/Sources' as repository 'https://r2u.stat.illinois.edu/ubuntu jammy InRelease' does not seem to provide it (sources.list entry misspelt?)\n",
+            "\n",
+            "WARNING: apt does not have a stable CLI interface. Use with caution in scripts.\n",
+            "\n",
+            "debconf: unable to initialize frontend: Dialog\n",
+            "debconf: (No usable dialog-like program is installed, so the dialog based frontend cannot be used. at /usr/share/perl5/Debconf/FrontEnd/Dialog.pm line 78, <> line 1.)\n",
+            "debconf: falling back to frontend: Readline\n",
+            "debconf: unable to initialize frontend: Readline\n",
+            "debconf: (This frontend requires a controlling tty.)\n",
+            "debconf: falling back to frontend: Teletype\n",
+            "dpkg-preconfigure: unable to re-open stdin: \n",
+            "The value of the GITHUB_TOKEN environment variable is being used for authentication.\n",
+            "To have GitHub CLI store credentials instead, first clear the value from the environment.\n"
+          ]
+        }
+      ]
     },
     {
       "cell_type": "markdown",