# Python
__pycache__/
*.py[cod]
*$py.class
*.so
.Python
env/
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg
.pytest_cache/
.mypy_cache/
.ruff_cache/
coverage/
htmlcov/

# Node
node_modules/
.next/
out/
build/
.npm/

# Environment
.env
.env.local
.env.*.local
.venv
venv/
ENV/

# ML & Data (CRITICAL for GitHub limits)
*.pth
*.pt
*.onnx
*.safetensors
*.h5
*.bin
data/raw/*
!data/raw/.gitkeep
data/processed/*
!data/processed/.gitkeep
data/chromadb/*
!data/chromadb/.gitkeep
data/uploads/*
!data/uploads/.gitkeep
models/*
!models/.gitkeep

# Windows / OS
Thumbs.db
ehthumbs.db
Desktop.ini
$RECYCLE.BIN/
.DS_Store

# Application Specific
logs/*.log
!logs/.gitkeep
backend/logs/*.log
!backend/logs/.gitkeep
backend/temp/*
!backend/temp/.gitkeep
backend/uploads/*
!backend/uploads/.gitkeep
*.sqlite3
*.db
medsight.db
scratch/
*.ipynb_checkpoints/
.ipynb_checkpoints/
image.png
_gen_paper*.py
_analyze_template.py
_doc_state.pkl
.claude-dev-helper/
.dist/
desktop.ini
results/__results___files/