# ==============================================================================
# OVARIAN CANCER DETECTION PROJECT - .GITIGNORE
# ==============================================================================

# Byte-compiled / optimized / DLL files
*__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/
cover/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3
db.sqlite3-journal

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
.pybuilder/
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
.python-version

# pipenv
Pipfile.lock

# poetry
poetry.lock

# pdm
.pdm.toml

# PEP 582
__pypackages__/

# Celery stuff
celerybeat-schedule
celerybeat.pid

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

# pytype static type analyzer
.pytype/

# Cython debug symbols
cython_debug/

# PyCharm
.idea/

# ==============================================================================
# MACHINE LEARNING & DATA SCIENCE SPECIFIC
# ==============================================================================

# Model files (commented out since we need to deploy them)
# *.pt
# *.pth
# *.pkl
# *.joblib
# *.h5
# *.hdf5

# Datasets (keep models but ignore large datasets)
data/
dataset/
datasets/
*.csv
*.tsv
*.json
*.jsonl
*.parquet

# Large files
*.zip
*.tar.gz
*.rar
*.7z

# Training outputs
logs/
runs/
experiments/
outputs/
checkpoints/
wandb/
mlruns/

# Tensorboard logs
events.out.tfevents.*

# ==============================================================================
# HUGGINGFACE & API SPECIFIC
# ==============================================================================

# HuggingFace cache
.cache/
transformers_cache/
huggingface_hub/

# API keys and tokens (CRITICAL SECURITY)
.env
.env.local
.env.development
.env.test
.env.production
*.token
*_token
api_keys.txt
secrets.txt
credentials.json
config.json

# HuggingFace specific
hf_token.txt
huggingface_token
.huggingface_token

# ==============================================================================
# GRADIO SPECIFIC
# ==============================================================================

# Gradio temporary files
gradio_cached_examples/
flagged/
gradio_queue.db

# ==============================================================================
# OPERATING SYSTEM FILES
# ==============================================================================

# macOS
.DS_Store
.AppleDouble
.LSOverride
Icon?
._*
.DocumentRevisions-V100
.fseventsd
.Spotlight-V100
.TemporaryItems
.Trashes
.VolumeIcon.icns
.com.apple.timemachine.donotpresent
.AppleDB
.AppleDesktop
Network Trash Folder
Temporary Items
.apdisk

# Windows
Thumbs.db
Thumbs.db:encryptable
ehthumbs.db
ehthumbs_vista.db
*.tmp
*.temp
Desktop.ini
$RECYCLE.BIN/
*.cab
*.msi
*.msix
*.msm
*.msp
*.lnk

# Linux
*~
.fuse_hidden*
.directory
.Trash-*
.nfs*

# ==============================================================================
# IDE AND EDITOR FILES
# ==============================================================================

# Visual Studio Code
.vscode/
*.code-workspace

# JetBrains IDEs
.idea/
*.iws
*.iml
*.ipr

# Sublime Text
*.sublime-project
*.sublime-workspace

# Vim
*.swp
*.swo
*~
.viminfo

# Emacs
*~
\#*\#
/.emacs.desktop
/.emacs.desktop.lock
*.elc
auto-save-list
tramp
.\#*

# Atom
.atom/

# ==============================================================================
# DEVELOPMENT AND TESTING
# ==============================================================================

# Testing
.tox/
.coverage
htmlcov/
.pytest_cache/
test_results/
test_outputs/

# Local development
local/
tmp/
temp/
.tmp/
.temp/

# Backup files
*.bak
*.backup
*.old
*_backup
*_old

# ==============================================================================
# PROJECT SPECIFIC
# ==============================================================================

# Original dataset folder (if you have it locally)
Original/
original_dataset/

# Feature extraction outputs (if regenerating)
feature_extraction_outputs/
extracted_features/

# Training artifacts (if retraining)
training_logs/
model_checkpoints/
training_outputs/

# Test images and results
test_images/
test_results/
prediction_outputs/

# Documentation builds
docs/build/
documentation/build/

# Deployment artifacts (optional)
deployment_logs/
build_logs/

# Personal notes and scratch files
notes.txt
todo.txt
scratch.py
test.py
debug.py
playground.py

# ==============================================================================
# SECURITY SENSITIVE FILES (CRITICAL)
# ==============================================================================

# Never commit these files containing sensitive information
**/secrets/**
**/credentials/**
**/*_secret*
**/*_key*
**/*_password*
**/*_token*
**/*credentials*
private_key*
public_key*
*.pem
*.key
*.crt
*.cert

# ==============================================================================
# LARGE FILES AND BINARIES
# ==============================================================================

# Large model files (uncomment if models are too large for Git)
models/*.pt
models/*.pth
model_cache/*.pt
model_cache/*.pth
models/
model_cache/
*.bin
*.pt
*.pkl
*.h5
*.onnx

# Videos and large media
*.mp4
*.avi
*.mov
*.mkv
*.webm
*.gif

# Large images (keep examples small)
# *.png
# *.jpg
# *.jpeg
# *.tiff
# *.bmp

models/feature_extractor.pt
models/feature_scaler.pt
models/multi_head_self_attention_classifier.pt
*model_cache
venv

# ==============================================================================
# END OF .GITIGNORE
# ==============================================================================