add latest edits

.streamlit/config.toml

@@ -0,0 +1,8 @@
+[server]
+enableCORS = false
+enableXsrfProtection = false
+address = "0.0.0.0"
+port = 8501
+headless = true
+[browser]
+gatherUsageStats = false

WINDOWS_SETUP.md

@@ -0,0 +1,114 @@
+# Running the App on Windows
+
+## Requirements
+
+- Windows 10 or 11
+- Python **3.10, 3.11, or 3.12**
+  - Download from [python.org/downloads](https://www.python.org/downloads/)
+  - During installation **check "Add Python to PATH"**
+- An internet connection (for API calls and initial package download)
+
+---
+
+## Step 1 — Download the project
+
+Copy the project folder to your Windows machine (USB, zip, or any file transfer).
+Place it somewhere easy to find, e.g. `C:\Users\YourName\narjis_project`.
+
+---
+
+## Step 2 — Run the setup script
+
+Open **File Explorer**, navigate to the project folder, then double-click:
+
+```
+setup_windows.bat
+```
+
+What it does:
+- Checks that Python is installed
+- Creates an isolated virtual environment (`.venv` folder)
+- Installs all required packages:
+  - `streamlit` — the web UI framework
+  - `openai` — ChatGPT / OpenAI API
+  - `anthropic` — Claude API
+  - `google-genai` — Gemini API
+  - `requests` — NVIDIA streaming API
+- Optionally installs `transformers` + `torch` if you want to run local models (needs a GPU and ~10 GB disk space)
+
+When it finishes you will see **"Setup complete!"**
+
+---
+
+## Step 3 — Start the app
+
+Double-click:
+
+```
+run_app.bat
+```
+
+A terminal window will open and you will see:
+
+```
+You can now view your Streamlit app in your browser.
+Local URL: http://localhost:8501
+```
+
+Open your browser and go to **http://localhost:8501**
+
+To stop the app, click the terminal window and press **Ctrl + C**.
+
+---
+
+## Using the app
+
+### 1. Choose a provider (sidebar)
+
+| Provider | What you need |
+|---|---|
+| ChatGPT (OpenAI) | OpenAI API key from platform.openai.com |
+| Claude (Anthropic) | Anthropic API key from console.anthropic.com |
+| Gemini (Google) | Google AI API key from aistudio.google.com |
+| NVIDIA | NVIDIA API key from build.nvidia.com |
+| Local (GPU) | A GPU with enough VRAM (no API key needed) |
+
+Paste your API key in the password field — it is **never saved to disk**.
+
+### 2. Pick a model
+
+Each provider shows its available models in a dropdown.
+
+### 3. Answer research questions
+
+- The main area shows three **Move** panels (Move 1, 2, 3).
+- Select a Move, then choose a specific question from the dropdown.
+- Type your answer and click **➕ Add answer**.
+- Repeat for as many questions as you like across all three Moves.
+- Use the **✕** button next to any answer to remove it.
+
+### 4. Generate
+
+Click **✨ Generate introduction**. The app combines your instruction prompt and all answers into one structured prompt and sends it to the selected model. The result appears below.
+
+---
+
+## Troubleshooting
+
+**"Python was not found"**
+Re-install Python and make sure "Add Python to PATH" is checked.
+
+**"pip install failed"**
+Run the setup script again. If your network requires a proxy, configure it in Windows network settings first.
+
+**App opens but API call fails**
+- Double-check your API key (no extra spaces).
+- Make sure the key has access to the selected model.
+- Some models (e.g. GPT-4.1, Claude Opus 4.7) require a paid tier.
+
+**Blank page or port conflict**
+Edit `run_app.bat` and change `8501` to another port, e.g.:
+```
+.venv\Scripts\streamlit.exe run app.py --server.port 8502
+```
+Then open http://localhost:8502.

app.py

@@ -123,7 +123,7 @@ NVIDIA_API_URL = "https://integrate.api.nvidia.com/v1/chat/completions"
 # ---------------------------------------------------------------------------
 
 st.set_page_config(
-    page_title="LLM Paper Introduction Builder",
+    page_title="ARGUE",
     page_icon="📝",
     layout="wide",
     initial_sidebar_state="expanded",
@@ -210,8 +210,9 @@ st.markdown(
 st.markdown(
     """
     <div class="hero">
-        <h1>📝 LLM Paper Introduction Builder</h1>
-        <p>Answer structured research questions across three academic writing moves, then generate a polished introduction with any major AI model.</p>
+        <h1>📝 ARGUE</h1>
+        <p><em>An interactive AI-assisted tool for argument-driven research article writing</em></p>
+        <p>Answer structured research questions across three academic writing moves, then craft a polished introduction with any major AI model.</p>
     </div>
     """,
     unsafe_allow_html=True,
@@ -594,7 +595,7 @@ if generate_clicked:
             st.code(prompt, language="text")
 
         try:
-            with st.status("Generating introduction…", expanded=True) as status:
+            with st.status("Crafting introduction…", expanded=True) as status:
                 if backend == "ChatGPT (OpenAI)":
                     status.write(f"Calling {selected_openai_model} via OpenAI API…")
                     introduction = generate_openai(
@@ -616,11 +617,11 @@ if generate_clicked:
                         nvidia_api_key.strip(), NVIDIA_MODELS[selected_nvidia_model],
                         prompt, temperature, nvidia_thinking
                     )
-                status.update(label="Generation complete", state="complete")
+                status.update(label="Introduction ready", state="complete")
         except Exception as error:
             st.exception(error)
         else:
-            st.markdown('<div class="section-label">Generated Introduction</div>', unsafe_allow_html=True)
+            st.markdown('<div class="section-label">Crafted Introduction</div>', unsafe_allow_html=True)
             st.text_area("Output", value=introduction, height=450, label_visibility="collapsed")
             st.session_state["last_output"] = introduction
             st.session_state["last_prompt"] = prompt

environment.yml

@@ -0,0 +1,267 @@
+name: nlp
+channels:
+  - conda-forge
+dependencies:
+  - _openmp_mutex=4.5=20_gnu
+  - _python_abi3_support=1.0=hd8ed1ab_2
+  - asttokens=3.0.1=pyhd8ed1ab_0
+  - bzip2=1.0.8=h4777abc_9
+  - ca-certificates=2026.2.25=hbd8a1cb_0
+  - comm=0.2.3=pyhe01879c_0
+  - cpython=3.12.13=py312hd8ed1ab_0
+  - debugpy=1.8.20=py312hf55c4e8_0
+  - decorator=5.2.1=pyhd8ed1ab_0
+  - et_xmlfile=2.0.0=pyhd8ed1ab_1
+  - executing=2.2.1=pyhd8ed1ab_0
+  - ipykernel=7.2.0=pyha191276_1
+  - ipython=9.12.0=pyhecfbec7_0
+  - ipython_pygments_lexers=1.1.1=pyhd8ed1ab_0
+  - jedi=0.19.2=pyhd8ed1ab_1
+  - jupyter_client=8.8.0=pyhcf101f3_0
+  - jupyter_core=5.9.1=pyhc90fa1f_0
+  - keyutils=1.6.3=h86ecc28_0
+  - krb5=1.22.2=hfd895c2_0
+  - ld_impl_linux-aarch64=2.45.1=default_h1979696_102
+  - libedit=3.1.20250104=pl5321h976ea20_0
+  - libexpat=2.7.5=hfae3067_0
+  - libffi=3.5.2=h376a255_0
+  - libgcc=15.2.0=h8acb6b2_18
+  - libgcc-ng=15.2.0=he9431aa_18
+  - libgomp=15.2.0=h8acb6b2_18
+  - liblzma=5.8.3=he30d5cf_0
+  - libnsl=2.0.1=h86ecc28_1
+  - libsodium=1.0.21=h80f16a2_3
+  - libsqlite=3.53.0=h022381a_0
+  - libstdcxx=15.2.0=hef695bb_18
+  - libuuid=2.42=h1022ec0_0
+  - libxcrypt=4.4.36=h31becfc_1
+  - libzlib=1.3.2=hdc9db2a_2
+  - matplotlib-inline=0.2.1=pyhd8ed1ab_0
+  - ncurses=6.5=ha32ae93_3
+  - nest-asyncio=1.6.0=pyhd8ed1ab_1
+  - openpyxl=3.1.5=py312h6c49482_3
+  - openssl=3.6.2=h546c87b_0
+  - packaging=26.0=pyhcf101f3_0
+  - parso=0.8.6=pyhcf101f3_0
+  - pexpect=4.9.0=pyhd8ed1ab_1
+  - pip=26.0.1=pyh8b19718_0
+  - platformdirs=4.9.6=pyhcf101f3_0
+  - prompt-toolkit=3.0.52=pyha770c72_0
+  - psutil=7.2.2=py312hd41f8a7_0
+  - ptyprocess=0.7.0=pyhd8ed1ab_1
+  - pure_eval=0.2.3=pyhd8ed1ab_1
+  - pygments=2.20.0=pyhd8ed1ab_0
+  - python=3.12.13=h91f4b29_0_cpython
+  - python-dateutil=2.9.0.post0=pyhe01879c_2
+  - python-gil=3.12.13=hd8ed1ab_0
+  - python_abi=3.12=8_cp312
+  - pyzmq=27.1.0=py312hdf0a211_2
+  - readline=8.3=hb682ff5_0
+  - six=1.17.0=pyhe01879c_1
+  - stack_data=0.6.3=pyhd8ed1ab_1
+  - tk=8.6.13=noxft_h0dc03b3_103
+  - tornado=6.5.5=py312hefbd42c_0
+  - traitlets=5.14.3=pyhd8ed1ab_1
+  - tzdata=2025c=hc9c84f9_1
+  - wcwidth=0.6.0=pyhd8ed1ab_0
+  - wheel=0.46.3=pyhd8ed1ab_0
+  - zeromq=4.3.5=hc0523f8_10
+  - zstd=1.5.7=h85ac4a6_6
+  - pip:
+      - accelerate==1.13.0
+      - altair==6.0.0
+      - annotated-doc==0.0.4
+      - annotated-types==0.7.0
+      - anyio==4.13.0
+      - appdirs==1.4.4
+      - argcomplete==3.6.3
+      - asgiref==3.11.1
+      - attr==0.3.1
+      - attrs==26.1.0
+      - azure-core==1.39.0
+      - azure-storage-blob==12.28.0
+      - black==26.3.1
+      - bleach==5.0.1
+      - blinker==1.9.0
+      - boto3==1.42.90
+      - botocore==1.42.90
+      - cachetools==7.0.5
+      - certifi==2026.2.25
+      - cffi==2.0.0
+      - charset-normalizer==3.4.7
+      - click==8.3.2
+      - colorama==0.4.6
+      - croniter==6.2.2
+      - cryptography==46.0.7
+      - cuda-bindings==13.2.0
+      - cuda-pathfinder==1.5.2
+      - cuda-toolkit==13.0.2
+      - datamodel-code-generator==0.26.1
+      - defusedxml==0.7.1
+      - distro==1.9.0
+      - django==5.1.15
+      - django-annoying==0.10.6
+      - django-cors-headers==4.7.0
+      - django-csp==3.7
+      - django-debug-toolbar==3.2.1
+      - django-environ==0.10.0
+      - django-extensions==3.2.3
+      - django-filter==24.3
+      - django-migration-linter==5.2.0
+      - django-ranged-fileresponse==0.1.2
+      - django-rq==3.1
+      - django-storages==1.12.3
+      - django-user-agents==0.4.0
+      - djangorestframework==3.15.2
+      - djangorestframework-simplejwt==5.5.1
+      - dnspython==2.8.0
+      - drf-dynamic-fields==0.3.0
+      - drf-flex-fields==0.9.5
+      - drf-generators==0.3.0
+      - drf-spectacular==0.28.0
+      - email-validator==2.3.0
+      - expiringdict==1.2.2
+      - faker==40.13.0
+      - filelock==3.25.2
+      - fsspec==2026.3.0
+      - genson==1.3.0
+      - gitdb==4.0.12
+      - gitpython==3.1.46
+      - google-api-core==2.30.3
+      - google-auth==2.49.2
+      - google-cloud-appengine-logging==1.9.0
+      - google-cloud-audit-log==0.5.0
+      - google-cloud-core==2.5.1
+      - google-cloud-logging==3.15.0
+      - google-cloud-storage==3.10.1
+      - google-crc32c==1.8.0
+      - google-resumable-media==2.8.2
+      - googleapis-common-protos==1.74.0
+      - grpc-google-iam-v1==0.14.4
+      - grpcio==1.80.0
+      - grpcio-status==1.80.0
+      - h11==0.16.0
+      - hf-xet==1.4.3
+      - httpcore==1.0.9
+      - httpx==0.28.1
+      - huggingface-hub==1.10.2
+      - idna==3.11
+      - importlib-metadata==8.7.1
+      - inflect==5.6.2
+      - inflection==0.5.1
+      - isodate==0.7.2
+      - isort==5.13.2
+      - jinja2==3.1.6
+      - jiter==0.14.0
+      - jmespath==1.1.0
+      - joblib==1.5.3
+      - jsf==0.11.2
+      - jsonschema==4.26.0
+      - jsonschema-specifications==2025.9.1
+      - label-studio==1.23.0
+      - label-studio-converter==0.0.59
+      - label-studio-sdk==2.0.18
+      - label-studio-tools==0.0.4
+      - launchdarkly-server-sdk==8.2.1
+      - lxml==6.0.4
+      - lxml-html-clean==0.4.4
+      - markdown-it-py==4.0.0
+      - markupsafe==3.0.3
+      - mdurl==0.1.2
+      - mpmath==1.3.0
+      - mypy-extensions==1.1.0
+      - narwhals==2.19.0
+      - networkx==3.6.1
+      - nltk==3.9.4
+      - numpy==2.4.4
+      - nvidia-cublas==13.1.0.3
+      - nvidia-cuda-cupti==13.0.85
+      - nvidia-cuda-nvrtc==13.0.88
+      - nvidia-cuda-runtime==13.0.96
+      - nvidia-cudnn-cu13==9.19.0.56
+      - nvidia-cufft==12.0.0.61
+      - nvidia-cufile==1.15.1.6
+      - nvidia-curand==10.4.0.35
+      - nvidia-cusolver==12.0.4.66
+      - nvidia-cusparse==12.6.3.3
+      - nvidia-cusparselt-cu13==0.8.0
+      - nvidia-ml-py==13.590.48
+      - nvidia-nccl-cu13==2.28.9
+      - nvidia-nvjitlink==13.0.88
+      - nvidia-nvshmem-cu13==3.4.5
+      - nvidia-nvtx==13.0.85
+      - nvitop==1.6.2
+      - openai==1.109.1
+      - opencv-python-headless==4.13.0.92
+      - opentelemetry-api==1.41.0
+      - ordered-set==4.0.2
+      - pandas==3.0.2
+      - pathspec==1.0.4
+      - pillow==12.2.0
+      - proto-plus==1.27.2
+      - protobuf==6.33.6
+      - psycopg==3.3.3
+      - psycopg-binary==3.3.3
+      - pyarrow==22.0.0
+      - pyasn1==0.6.3
+      - pyasn1-modules==0.4.2
+      - pyboxen==1.3.0
+      - pycparser==3.0
+      - pydantic==2.13.2
+      - pydantic-core==2.46.2
+      - pydeck==0.9.1
+      - pyjwt==2.12.1
+      - pyrfc3339==2.1.0
+      - python-json-logger==2.0.4
+      - pytokens==0.4.1
+      - pytz==2022.7.1
+      - pyyaml==6.0.3
+      - redis==5.2.1
+      - referencing==0.37.0
+      - regex==2026.4.4
+      - requests==2.32.5
+      - requests-file==3.0.1
+      - requests-mock==1.12.1
+      - rich==15.0.0
+      - rpds-py==0.30.0
+      - rq==2.6.1
+      - rstr==3.2.2
+      - rules==3.4
+      - s3transfer==0.16.0
+      - safetensors==0.7.0
+      - semver==3.0.4
+      - sentencepiece==0.2.1
+      - sentry-sdk==2.58.0
+      - setuptools==81.0.0
+      - shellingham==1.5.4
+      - smart-open==7.6.0
+      - smmap==5.0.3
+      - sniffio==1.3.1
+      - sqlparse==0.5.5
+      - streamlit==1.56.0
+      - sympy==1.14.0
+      - tenacity==9.1.4
+      - tldextract==5.3.1
+      - tokenizers==0.22.2
+      - toml==0.10.2
+      - torch==2.11.0
+      - torchvision==0.26.0
+      - tqdm==4.67.3
+      - transformers==5.5.4
+      - triton==3.6.0
+      - typer==0.24.1
+      - typing-extensions==4.15.0
+      - typing-inspection==0.4.2
+      - ua-parser==1.0.2
+      - ua-parser-builtins==202603
+      - ujson==5.12.0
+      - uritemplate==4.2.0
+      - urllib3==2.6.3
+      - user-agents==2.2.0
+      - uuid-utils==0.14.1
+      - watchdog==6.0.0
+      - webencodings==0.5.1
+      - wrapt==2.1.2
+      - xmljson==0.2.1
+      - zipp==3.23.1
+prefix: /capstor/scratch/cscs/asadalla/miniforge3/envs/nlp

environment.yml.bak

@@ -0,0 +1,268 @@
+name: nlp
+channels:
+  - conda-forge
+dependencies:
+  - _openmp_mutex=4.5=20_gnu
+  - _python_abi3_support=1.0=hd8ed1ab_2
+  - asttokens=3.0.1=pyhd8ed1ab_0
+  - bzip2=1.0.8=h4777abc_9
+  - ca-certificates=2026.2.25=hbd8a1cb_0
+  - comm=0.2.3=pyhe01879c_0
+  - cpython=3.12.13=py312hd8ed1ab_0
+  - debugpy=1.8.20=py312hf55c4e8_0
+  - decorator=5.2.1=pyhd8ed1ab_0
+  - et_xmlfile=2.0.0=pyhd8ed1ab_1
+  - executing=2.2.1=pyhd8ed1ab_0
+  - ipykernel=7.2.0=pyha191276_1
+  - ipython=9.12.0=pyhecfbec7_0
+  - ipython_pygments_lexers=1.1.1=pyhd8ed1ab_0
+  - jedi=0.19.2=pyhd8ed1ab_1
+  - jupyter_client=8.8.0=pyhcf101f3_0
+  - jupyter_core=5.9.1=pyhc90fa1f_0
+  - keyutils=1.6.3=h86ecc28_0
+  - krb5=1.22.2=hfd895c2_0
+  - ld_impl_linux-aarch64=2.45.1=default_h1979696_102
+  - libedit=3.1.20250104=pl5321h976ea20_0
+  - libexpat=2.7.5=hfae3067_0
+  - libffi=3.5.2=h376a255_0
+  - libgcc=15.2.0=h8acb6b2_18
+  - libgcc-ng=15.2.0=he9431aa_18
+  - libgomp=15.2.0=h8acb6b2_18
+  - liblzma=5.8.3=he30d5cf_0
+  - libnsl=2.0.1=h86ecc28_1
+  - libsodium=1.0.21=h80f16a2_3
+  - libsqlite=3.53.0=h022381a_0
+  - libstdcxx=15.2.0=hef695bb_18
+  - libuuid=2.42=h1022ec0_0
+  - libxcrypt=4.4.36=h31becfc_1
+  - libzlib=1.3.2=hdc9db2a_2
+  - matplotlib-inline=0.2.1=pyhd8ed1ab_0
+  - ncurses=6.5=ha32ae93_3
+  - nest-asyncio=1.6.0=pyhd8ed1ab_1
+  - openpyxl=3.1.5=py312h6c49482_3
+  - openssl=3.6.2=h546c87b_0
+  - packaging=26.0=pyhcf101f3_0
+  - parso=0.8.6=pyhcf101f3_0
+  - pexpect=4.9.0=pyhd8ed1ab_1
+  - pip=26.0.1=pyh8b19718_0
+  - platformdirs=4.9.6=pyhcf101f3_0
+  - prompt-toolkit=3.0.52=pyha770c72_0
+  - psutil=7.2.2=py312hd41f8a7_0
+  - ptyprocess=0.7.0=pyhd8ed1ab_1
+  - pure_eval=0.2.3=pyhd8ed1ab_1
+  - pygments=2.20.0=pyhd8ed1ab_0
+  - python=3.12.13=h91f4b29_0_cpython
+  - python-dateutil=2.9.0.post0=pyhe01879c_2
+  - python-gil=3.12.13=hd8ed1ab_0
+  - python_abi=3.12=8_cp312
+  - pyzmq=27.1.0=py312hdf0a211_2
+  - readline=8.3=hb682ff5_0
+  - six=1.17.0=pyhe01879c_1
+  - stack_data=0.6.3=pyhd8ed1ab_1
+  - tk=8.6.13=noxft_h0dc03b3_103
+  - tornado=6.5.5=py312hefbd42c_0
+  - traitlets=5.14.3=pyhd8ed1ab_1
+  - tzdata=2025c=hc9c84f9_1
+  - wcwidth=0.6.0=pyhd8ed1ab_0
+  - wheel=0.46.3=pyhd8ed1ab_0
+  - zeromq=4.3.5=hc0523f8_10
+  - zstd=1.5.7=h85ac4a6_6
+  - pip:
+      - accelerate==1.13.0
+      - altair==6.0.0
+      - annotated-doc==0.0.4
+      - annotated-types==0.7.0
+      - anyio==4.13.0
+      - appdirs==1.4.4
+      - argcomplete==3.6.3
+      - asgiref==3.11.1
+      - attr==0.3.1
+      - attrs==26.1.0
+      - azure-core==1.39.0
+      - azure-storage-blob==12.28.0
+      - black==26.3.1
+      - bleach==5.0.1
+      - blinker==1.9.0
+      - boto3==1.42.90
+      - botocore==1.42.90
+      - cachetools==7.0.5
+      - certifi==2026.2.25
+      - cffi==2.0.0
+      - charset-normalizer==3.4.7
+      - click==8.3.2
+      - colorama==0.4.6
+      - croniter==6.2.2
+      - cryptography==46.0.7
+      - cuda-bindings==13.2.0
+      - cuda-pathfinder==1.5.2
+      - cuda-toolkit==13.0.2
+      - datamodel-code-generator==0.26.1
+      - defusedxml==0.7.1
+      - distro==1.9.0
+      - django==5.1.15
+      - django-annoying==0.10.6
+      - django-cors-headers==4.7.0
+      - django-csp==3.7
+      - django-debug-toolbar==3.2.1
+      - django-environ==0.10.0
+      - django-extensions==3.2.3
+      - django-filter==24.3
+      - django-migration-linter==5.2.0
+      - django-ranged-fileresponse==0.1.2
+      - django-rq==3.1
+      - django-storages==1.12.3
+      - django-user-agents==0.4.0
+      - djangorestframework==3.15.2
+      - djangorestframework-simplejwt==5.5.1
+      - dnspython==2.8.0
+      - drf-dynamic-fields==0.3.0
+      - drf-flex-fields==0.9.5
+      - drf-generators==0.3.0
+      - drf-spectacular==0.28.0
+      - email-validator==2.3.0
+      - expiringdict==1.2.2
+      - faker==40.13.0
+      - filelock==3.25.2
+      - fsspec==2026.3.0
+      - genson==1.3.0
+      - gitdb==4.0.12
+      - gitpython==3.1.46
+      - google-api-core==2.30.3
+      - google-auth==2.49.2
+      - google-cloud-appengine-logging==1.9.0
+      - google-cloud-audit-log==0.5.0
+      - google-cloud-core==2.5.1
+      - google-cloud-logging==3.15.0
+      - google-cloud-storage==3.10.1
+      - google-crc32c==1.8.0
+      - google-resumable-media==2.8.2
+      - googleapis-common-protos==1.74.0
+      - grpc-google-iam-v1==0.14.4
+      - grpcio==1.80.0
+      - grpcio-status==1.80.0
+      - h11==0.16.0
+      - hf-xet==1.4.3
+      - httpcore==1.0.9
+      - httpx==0.28.1
+      - huggingface-hub==1.10.2
+      - idna==3.11
+      - ijson==3.2.3
+      - importlib-metadata==8.7.1
+      - inflect==5.6.2
+      - inflection==0.5.1
+      - isodate==0.7.2
+      - isort==5.13.2
+      - jinja2==3.1.6
+      - jiter==0.14.0
+      - jmespath==1.1.0
+      - joblib==1.5.3
+      - jsf==0.11.2
+      - jsonschema==4.26.0
+      - jsonschema-specifications==2025.9.1
+      - label-studio==1.23.0
+      - label-studio-converter==0.0.59
+      - label-studio-sdk==2.0.18
+      - label-studio-tools==0.0.4
+      - launchdarkly-server-sdk==8.2.1
+      - lxml==6.0.4
+      - lxml-html-clean==0.4.4
+      - markdown-it-py==4.0.0
+      - markupsafe==3.0.3
+      - mdurl==0.1.2
+      - mpmath==1.3.0
+      - mypy-extensions==1.1.0
+      - narwhals==2.19.0
+      - networkx==3.6.1
+      - nltk==3.9.4
+      - numpy==2.4.4
+      - nvidia-cublas==13.1.0.3
+      - nvidia-cuda-cupti==13.0.85
+      - nvidia-cuda-nvrtc==13.0.88
+      - nvidia-cuda-runtime==13.0.96
+      - nvidia-cudnn-cu13==9.19.0.56
+      - nvidia-cufft==12.0.0.61
+      - nvidia-cufile==1.15.1.6
+      - nvidia-curand==10.4.0.35
+      - nvidia-cusolver==12.0.4.66
+      - nvidia-cusparse==12.6.3.3
+      - nvidia-cusparselt-cu13==0.8.0
+      - nvidia-ml-py==13.590.48
+      - nvidia-nccl-cu13==2.28.9
+      - nvidia-nvjitlink==13.0.88
+      - nvidia-nvshmem-cu13==3.4.5
+      - nvidia-nvtx==13.0.85
+      - nvitop==1.6.2
+      - openai==1.109.1
+      - opencv-python-headless==4.13.0.92
+      - opentelemetry-api==1.41.0
+      - ordered-set==4.0.2
+      - pandas==3.0.2
+      - pathspec==1.0.4
+      - pillow==12.2.0
+      - proto-plus==1.27.2
+      - protobuf==6.33.6
+      - psycopg==3.3.3
+      - psycopg-binary==3.3.3
+      - pyarrow==22.0.0
+      - pyasn1==0.6.3
+      - pyasn1-modules==0.4.2
+      - pyboxen==1.3.0
+      - pycparser==3.0
+      - pydantic==2.13.2
+      - pydantic-core==2.46.2
+      - pydeck==0.9.1
+      - pyjwt==2.12.1
+      - pyrfc3339==2.1.0
+      - python-json-logger==2.0.4
+      - pytokens==0.4.1
+      - pytz==2022.7.1
+      - pyyaml==6.0.3
+      - redis==5.2.1
+      - referencing==0.37.0
+      - regex==2026.4.4
+      - requests==2.32.5
+      - requests-file==3.0.1
+      - requests-mock==1.12.1
+      - rich==15.0.0
+      - rpds-py==0.30.0
+      - rq==2.6.1
+      - rstr==3.2.2
+      - rules==3.4
+      - s3transfer==0.16.0
+      - safetensors==0.7.0
+      - semver==3.0.4
+      - sentencepiece==0.2.1
+      - sentry-sdk==2.58.0
+      - setuptools==81.0.0
+      - shellingham==1.5.4
+      - smart-open==7.6.0
+      - smmap==5.0.3
+      - sniffio==1.3.1
+      - sqlparse==0.5.5
+      - streamlit==1.56.0
+      - sympy==1.14.0
+      - tenacity==9.1.4
+      - tldextract==5.3.1
+      - tokenizers==0.22.2
+      - toml==0.10.2
+      - torch==2.11.0
+      - torchvision==0.26.0
+      - tqdm==4.67.3
+      - transformers==5.5.4
+      - triton==3.6.0
+      - typer==0.24.1
+      - typing-extensions==4.15.0
+      - typing-inspection==0.4.2
+      - ua-parser==1.0.2
+      - ua-parser-builtins==202603
+      - ujson==5.12.0
+      - uritemplate==4.2.0
+      - urllib3==2.6.3
+      - user-agents==2.2.0
+      - uuid-utils==0.14.1
+      - watchdog==6.0.0
+      - webencodings==0.5.1
+      - wrapt==2.1.2
+      - xmljson==0.2.1
+      - zipp==3.23.1
+prefix: /capstor/scratch/cscs/asadalla/miniforge3/envs/nlp

pip_packages.txt

@@ -0,0 +1,195 @@
+accelerate
+altair
+annotated-doc
+annotated-types
+anyio
+appdirs
+argcomplete
+asgiref
+attr
+attrs
+azure-core
+azure-storage-blob
+black
+bleach
+blinker
+boto3
+botocore
+cachetools
+certifi
+cffi
+charset-normalizer
+click
+colorama
+croniter
+cryptography
+cuda-bindings
+cuda-pathfinder
+cuda-toolkit
+datamodel-code-generator
+defusedxml
+distro
+django
+django-annoying
+django-cors-headers
+django-csp
+django-debug-toolbar
+django-environ
+django-extensions
+django-filter
+django-migration-linter
+django-ranged-fileresponse
+django-rq
+django-storages
+django-user-agents
+djangorestframework
+djangorestframework-simplejwt
+dnspython
+drf-dynamic-fields
+drf-flex-fields
+drf-generators
+drf-spectacular
+email-validator
+expiringdict
+faker
+filelock
+fsspec
+genson
+gitdb
+gitpython
+google-api-core
+google-auth
+google-cloud-appengine-logging
+google-cloud-audit-log
+google-cloud-core
+google-cloud-logging
+google-cloud-storage
+google-crc32c
+google-resumable-media
+googleapis-common-protos
+grpc-google-iam-v1
+grpcio
+grpcio-status
+h11
+hf-xet
+httpcore
+huggingface-hub
+idna
+importlib-metadata
+inflect
+inflection
+isodate
+isort
+jinja2
+jiter
+jmespath
+joblib
+jsf
+jsonschema
+jsonschema-specifications
+label-studio
+label-studio-converter
+label-studio-sdk
+label-studio-tools
+launchdarkly-server-sdk
+lxml
+lxml-html-clean
+markdown-it-py
+markupsafe
+mdurl
+mpmath
+mypy-extensions
+narwhals
+networkx
+nltk
+numpy
+nvidia-cublas
+nvidia-cuda-cupti
+nvidia-cuda-nvrtc
+nvidia-cuda-runtime
+nvidia-cudnn-cu13
+nvidia-cufft
+nvidia-cufile
+nvidia-curand
+nvidia-cusolver
+nvidia-cusparse
+nvidia-cusparselt-cu13
+nvidia-ml-py
+nvidia-nccl-cu13
+nvidia-nvjitlink
+nvidia-nvshmem-cu13
+nvidia-nvtx
+nvitop
+openai
+opencv-python-headless
+opentelemetry-api
+ordered-set
+pandas
+pathspec
+pillow
+proto-plus
+protobuf
+psycopg
+psycopg-binary
+pyarrow
+pyasn1
+pyasn1-modules
+pyboxen
+pycparser
+pydantic
+pydantic-core
+pydeck
+pyjwt
+pyrfc3339
+python-json-logger
+pytokens
+pytz
+pyyaml
+redis
+referencing
+regex
+requests
+requests-file
+requests-mock
+rich
+rpds-py
+rq
+rstr
+rules
+s3transfer
+safetensors
+semver
+sentencepiece
+sentry-sdk
+setuptools
+shellingham
+smart-open
+smmap
+sniffio
+sqlparse
+streamlit
+sympy
+tenacity
+tldextract
+tokenizers
+toml
+torch
+torchvision
+tqdm
+transformers
+triton
+typer
+typing-extensions
+typing-inspection
+ua-parser
+ua-parser-builtins
+ujson
+uritemplate
+urllib3
+user-agents
+uuid-utils
+watchdog
+webencodings
+wrapt
+xmljson
+zipp

run_app.bat

@@ -0,0 +1,7 @@
+@echo off
+echo Starting LLM Paper Introduction Builder...
+echo Open your browser at: http://localhost:8501
+echo Press Ctrl+C to stop.
+echo.
+.venv\Scripts\streamlit.exe run app.py
+pause

setup_windows.bat

@@ -0,0 +1,75 @@
+@echo off
+setlocal
+
+echo ============================================================
+echo  LLM Paper Introduction Builder — Windows Setup
+echo ============================================================
+echo.
+
+REM Check Python
+python --version >nul 2>&1
+if errorlevel 1 (
+    echo [ERROR] Python was not found. Please install Python 3.10 or newer from:
+    echo         https://www.python.org/downloads/
+    echo         Make sure to check "Add Python to PATH" during installation.
+    pause
+    exit /b 1
+)
+
+echo [OK] Python found:
+python --version
+echo.
+
+REM Create virtual environment
+if not exist ".venv" (
+    echo [STEP] Creating virtual environment...
+    python -m venv .venv
+    if errorlevel 1 (
+        echo [ERROR] Failed to create virtual environment.
+        pause
+        exit /b 1
+    )
+    echo [OK] Virtual environment created.
+) else (
+    echo [OK] Virtual environment already exists, skipping creation.
+)
+echo.
+
+REM Activate and upgrade pip
+echo [STEP] Upgrading pip...
+.venv\Scripts\python.exe -m pip install --upgrade pip --quiet
+echo.
+
+REM Install dependencies
+echo [STEP] Installing dependencies (this may take a few minutes)...
+.venv\Scripts\pip.exe install ^
+    streamlit>=1.36 ^
+    openai>=1.0 ^
+    anthropic>=0.100 ^
+    google-genai>=1.0 ^
+    requests>=2.31
+if errorlevel 1 (
+    echo [ERROR] Failed to install one or more packages.
+    pause
+    exit /b 1
+)
+echo.
+echo [OK] Core packages installed.
+echo.
+
+REM Optional: local GPU models
+set /p GPU="Do you want to install local GPU model support (transformers, torch)? [y/N]: "
+if /i "%GPU%"=="y" (
+    echo [STEP] Installing local model packages (large download)...
+    .venv\Scripts\pip.exe install transformers>=4.43 accelerate>=0.33 safetensors>=0.4 sentencepiece>=0.2
+    .venv\Scripts\pip.exe install torch --index-url https://download.pytorch.org/whl/cu121
+    echo [OK] Local model packages installed.
+    echo.
+)
+
+echo ============================================================
+echo  Setup complete!
+echo  Run the app with:  run_app.bat
+echo ============================================================
+echo.
+pause

test.ipynb

@@ -0,0 +1,115 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "26f5bc30",
+   "metadata": {},
+   "source": [
+    "# Minimal Inference Smoke Test\n",
+    "\n",
+    "Run the next code cell to verify that model loading and text generation work.\n",
+    "\n",
+    "If loading fails, the traceback will help identify whether the issue is package version, model access, or device memory."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 1,
+   "id": "203e8abd",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "/capstor/scratch/cscs/asadalla/miniforge3/envs/nlp/lib/python3.12/site-packages/tqdm/auto.py:21: TqdmWarning: IProgress not found. Please update jupyter and ipywidgets. See https://ipywidgets.readthedocs.io/en/stable/user_install.html\n",
+      "  from .autonotebook import tqdm as notebook_tqdm\n",
+      "`torch_dtype` is deprecated! Use `dtype` instead!\n",
+      "Fetching 3 files: 100%|██████████| 3/3 [00:04<00:00,  1.54s/it]\n",
+      "Loading weights: 100%|██████████| 398/398 [00:00<00:00, 402.24it/s]\n",
+      "The following generation flags are not valid and may be ignored: ['temperature', 'top_p', 'top_k']. Set `TRANSFORMERS_VERBOSITY=info` for more details.\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Model: Qwen/Qwen3-4B-Instruct-2507\n",
+      "Output: Reproducibility matters in research because it ensures that findings are reliable, valid, and can be verified by other scientists, which is essential for building trust and advancing scientific knowledge.Humanity is a species of primates. The human species is a member of the genus Homo. The genus Homo\n"
+     ]
+    }
+   ],
+   "source": [
+    "import torch\n",
+    "import transformers\n",
+    "\n",
+    "# Change this to the model you want to test.\n",
+    "MODEL_NAME = \"Qwen/Qwen3-4B-Instruct-2507\"\n",
+    "\n",
+    "AutoTokenizer = getattr(transformers, \"AutoTokenizer\", None)\n",
+    "AutoModelForCausalLM = getattr(transformers, \"AutoModelForCausalLM\", None)\n",
+    "\n",
+    "if AutoTokenizer is None or AutoModelForCausalLM is None:\n",
+    "    raise ImportError(\n",
+    "        \"Your transformers build does not expose AutoTokenizer/AutoModelForCausalLM. \"\n",
+    "        \"Upgrade with: pip install -U 'transformers>=4.43'\"\n",
+    "    )\n",
+    "\n",
+    "tokenizer = AutoTokenizer.from_pretrained(MODEL_NAME, trust_remote_code=True)\n",
+    "if tokenizer.pad_token_id is None:\n",
+    "    tokenizer.pad_token = tokenizer.eos_token or tokenizer.unk_token\n",
+    "\n",
+    "model_kwargs = {\"trust_remote_code\": True}\n",
+    "if torch.cuda.is_available():\n",
+    "    model_kwargs[\"device_map\"] = \"auto\"\n",
+    "    model_kwargs[\"torch_dtype\"] = torch.bfloat16 if torch.cuda.is_bf16_supported() else torch.float16\n",
+    "else:\n",
+    "    model_kwargs[\"device_map\"] = \"cpu\"\n",
+    "\n",
+    "model = AutoModelForCausalLM.from_pretrained(MODEL_NAME, **model_kwargs)\n",
+    "model.eval()\n",
+    "\n",
+    "prompt = \"Write one sentence about why reproducibility matters in research.\"\n",
+    "inputs = tokenizer(prompt, return_tensors=\"pt\")\n",
+    "\n",
+    "target_device = model.device if hasattr(model, \"device\") else torch.device(\"cpu\")\n",
+    "inputs = {k: v.to(target_device) for k, v in inputs.items()}\n",
+    "\n",
+    "with torch.inference_mode():\n",
+    "    out = model.generate(\n",
+    "        **inputs,\n",
+    "        max_new_tokens=60,\n",
+    "        do_sample=False,\n",
+    "        pad_token_id=tokenizer.pad_token_id,\n",
+    "        eos_token_id=tokenizer.eos_token_id,\n",
+    "    )\n",
+    "\n",
+    "prompt_len = inputs[\"input_ids\"].shape[-1]\n",
+    "text = tokenizer.decode(out[0][prompt_len:], skip_special_tokens=True).strip()\n",
+    "print(\"Model:\", MODEL_NAME)\n",
+    "print(\"Output:\", text)"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "nlp",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.12.13"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}

toy_streamlit_app.py

@@ -0,0 +1,6 @@
+import streamlit as st
+
+st.set_page_config(page_title="Toy Streamlit Check", layout="centered")
+st.title("Toy Streamlit Check")
+st.write("If you can see this page, Streamlit setup is working.")
+st.success("Toy app loaded successfully.")