Publish v1.0.0
Browse files- v1.0.0/hparams.json +73 -0
v1.0.0/hparams.json
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| 1 |
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{
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| 2 |
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"affinity_model_args": {
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| 3 |
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"esm_embed_dim": 1280,
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| 4 |
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"pairformer_args": {
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"activation_checkpointing": true,
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"dropout": 0.1,
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"num_blocks": 8,
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| 8 |
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"pairwise_head_width": 32,
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"pairwise_num_heads": 4,
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"post_layer_norm": false
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},
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"transformer_args": {
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"activation_checkpointing": false,
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| 14 |
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"classification_head": true,
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"num_blocks": 2,
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"num_heads": 4,
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"token_s": 384
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}
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},
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"affinity_model_args2": {
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"esm_embed_dim": 1280,
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"pairformer_args": {
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"activation_checkpointing": true,
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"dropout": 0.1,
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"num_blocks": 8,
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"pairwise_head_width": 32,
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"pairwise_num_heads": 4,
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| 28 |
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"post_layer_norm": false
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},
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"transformer_args": {
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"activation_checkpointing": false,
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| 32 |
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"classification_head": true,
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| 33 |
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"num_blocks": 2,
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"num_heads": 4,
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"token_s": 384
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}
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},
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"affinity_prediction": true,
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"atom_feature_dim": 390,
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| 40 |
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"atom_s": 128,
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| 41 |
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"atom_z": 16,
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| 42 |
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"atoms_per_window_keys": 128,
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| 43 |
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"atoms_per_window_queries": 32,
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"embedder_args": {
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| 45 |
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"add_additional_atom_features": true,
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| 46 |
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"atom_encoder_depth": 3,
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| 47 |
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"atom_encoder_heads": 4,
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"pocket_conditioning": false
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},
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"esm_module_args": {
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"dropout": 0.05,
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| 52 |
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"esm_embed_dim": 1280,
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| 53 |
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"esm_num_layers": 34,
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| 54 |
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"use_esm_all_layers": false
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},
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| 56 |
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"max_dist": 22.0,
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| 57 |
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"num_dist_bins": 64,
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| 58 |
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"pairformer_model_args": {
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| 59 |
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"activation_checkpointing": true,
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| 60 |
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"dropout": 0.25,
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| 61 |
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"num_blocks": 48,
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| 62 |
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"pairwise_head_width": 32,
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| 63 |
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"pairwise_num_heads": 4,
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| 64 |
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"post_layer_norm": false
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| 65 |
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},
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| 66 |
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"predict_args": {
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| 67 |
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"pose_protein_cutoff": 15.0,
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| 68 |
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"recycling_steps": 5
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},
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"token_s": 384,
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| 71 |
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"token_z": 128,
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| 72 |
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"use_kernels": true
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}
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