Publish v1.0.0
Browse files
README.md
CHANGED
|
@@ -1,3 +1,32 @@
|
|
| 1 |
---
|
| 2 |
license: apache-2.0
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 3 |
---
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
---
|
| 2 |
license: apache-2.0
|
| 3 |
+
library_name: nesso
|
| 4 |
+
tags:
|
| 5 |
+
- structure-based-drug-design
|
| 6 |
+
- binding-affinity
|
| 7 |
+
- protein-ligand
|
| 8 |
+
- drug-discovery
|
| 9 |
+
pipeline_tag: other
|
| 10 |
---
|
| 11 |
+
|
| 12 |
+
# Model Card for Nesso-1
|
| 13 |
+
|
| 14 |
+
Nesso-1 is a fast, structure-based protein–ligand binding-affinity model. Given a
|
| 15 |
+
protein sequence and a ligand (SMILES / CCD code / SDF), it predicts a binding
|
| 16 |
+
affinity scalar along with a binder/non-binder score.
|
| 17 |
+
|
| 18 |
+
- **Developed by:** [Valence Labs](https://valencelabs.com) ([Recursion](https://recursion.com))
|
| 19 |
+
- **Input modality:** Protein Amino-Acid sequence + Ligand (SMILES, CCD code, or SDF)
|
| 20 |
+
- **License:** [Apache License 2.0](https://huggingface.co/recursionpharma/nesso/blob/main/LICENSE)
|
| 21 |
+
- **Paper:** [Technical Report](link)
|
| 22 |
+
|
| 23 |
+
For full method details and evaluations, see the [Technical Report](link) and [Github](https://github.com/recursionpharma/nesso/)
|
| 24 |
+
|
| 25 |
+
## Documentation
|
| 26 |
+
|
| 27 |
+
Install the package, run predictions, and explore examples from the GitHub repository:
|
| 28 |
+
|
| 29 |
+
- [README](https://github.com/recursionpharma/nesso) — installation, quick start, and development setup
|
| 30 |
+
- [docs/prediction.md](https://github.com/recursionpharma/nesso/blob/main/docs/prediction.md) — CLI options, input YAML schema, and output format
|
| 31 |
+
- [tutorial/](https://github.com/recursionpharma/nesso/tree/main/tutorial) — runnable YAML examples and feature extraction
|
| 32 |
+
- [Issues](https://github.com/recursionpharma/nesso/issues) - For questions related to weights, model code, please raise issues here.
|