| { | |
| "input_len": 2114, | |
| "output_profile_len": 1000, | |
| "motif_module_params": { | |
| "filters": [64], | |
| "kernel_sizes": [21], | |
| "padding": "valid" | |
| }, | |
| "syntax_module_params": { | |
| "num_dilation_layers": 8, | |
| "filters": 64, | |
| "kernel_size": 3, | |
| "padding": "valid", | |
| "pre_activation_residual_unit": true | |
| }, | |
| "profile_head_params": { | |
| "filters": 1, | |
| "kernel_size": 75, | |
| "padding": "valid" | |
| }, | |
| "counts_head_params": { | |
| "filters": 1, | |
| "kernel_size": 75, | |
| "padding": "valid", | |
| "units": [1], | |
| "activations":["linear"], | |
| "dropouts":[0] | |
| }, | |
| "profile_bias_module_params": { | |
| "kernel_sizes": [1] | |
| }, | |
| "counts_bias_module_params": { | |
| }, | |
| "use_attribution_prior": false, | |
| "attribution_prior_params": { | |
| "frequency_limit": 150, | |
| "limit_softness": 0.2, | |
| "grad_smooth_sigma": 3, | |
| "profile_grad_loss_weight": 200, | |
| "counts_grad_loss_weight": 100 | |
| }, | |
| "loss_weights": [1, 89.23013136288998], | |
| "counts_loss": "MSE" | |
| } | |