Training in progress, epoch 0

config.json

@@ -0,0 +1,95 @@
+{
+  "_name_or_path": "microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext",
+  "architectures": [
+    "BertForTokenClassification"
+  ],
+  "attention_probs_dropout_prob": 0.1,
+  "classifier_dropout": null,
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.1,
+  "hidden_size": 768,
+  "id2label": {
+    "0": "B-Amino_acid",
+    "1": "B-Anatomical_system",
+    "2": "B-Cancer",
+    "3": "B-Cell",
+    "4": "B-Cellular_component",
+    "5": "B-Developing_anatomical_structure",
+    "6": "B-Gene_or_gene_product",
+    "7": "B-Immaterial_anatomical_entity",
+    "8": "B-Multi-tissue_structure",
+    "9": "B-Organ",
+    "10": "B-Organism",
+    "11": "B-Organism_subdivision",
+    "12": "B-Organism_substance",
+    "13": "B-Pathological_formation",
+    "14": "B-Simple_chemical",
+    "15": "B-Tissue",
+    "16": "I-Amino_acid",
+    "17": "I-Anatomical_system",
+    "18": "I-Cancer",
+    "19": "I-Cell",
+    "20": "I-Cellular_component",
+    "21": "I-Developing_anatomical_structure",
+    "22": "I-Gene_or_gene_product",
+    "23": "I-Immaterial_anatomical_entity",
+    "24": "I-Multi-tissue_structure",
+    "25": "I-Organ",
+    "26": "I-Organism",
+    "27": "I-Organism_subdivision",
+    "28": "I-Organism_substance",
+    "29": "I-Pathological_formation",
+    "30": "I-Simple_chemical",
+    "31": "I-Tissue",
+    "32": "O"
+  },
+  "initializer_range": 0.02,
+  "intermediate_size": 3072,
+  "label2id": {
+    "B-Amino_acid": 0,
+    "B-Anatomical_system": 1,
+    "B-Cancer": 2,
+    "B-Cell": 3,
+    "B-Cellular_component": 4,
+    "B-Developing_anatomical_structure": 5,
+    "B-Gene_or_gene_product": 6,
+    "B-Immaterial_anatomical_entity": 7,
+    "B-Multi-tissue_structure": 8,
+    "B-Organ": 9,
+    "B-Organism": 10,
+    "B-Organism_subdivision": 11,
+    "B-Organism_substance": 12,
+    "B-Pathological_formation": 13,
+    "B-Simple_chemical": 14,
+    "B-Tissue": 15,
+    "I-Amino_acid": 16,
+    "I-Anatomical_system": 17,
+    "I-Cancer": 18,
+    "I-Cell": 19,
+    "I-Cellular_component": 20,
+    "I-Developing_anatomical_structure": 21,
+    "I-Gene_or_gene_product": 22,
+    "I-Immaterial_anatomical_entity": 23,
+    "I-Multi-tissue_structure": 24,
+    "I-Organ": 25,
+    "I-Organism": 26,
+    "I-Organism_subdivision": 27,
+    "I-Organism_substance": 28,
+    "I-Pathological_formation": 29,
+    "I-Simple_chemical": 30,
+    "I-Tissue": 31,
+    "O": 32
+  },
+  "layer_norm_eps": 1e-12,
+  "max_position_embeddings": 512,
+  "model_type": "bert",
+  "num_attention_heads": 12,
+  "num_hidden_layers": 12,
+  "pad_token_id": 0,
+  "position_embedding_type": "absolute",
+  "torch_dtype": "float32",
+  "transformers_version": "4.35.2",
+  "type_vocab_size": 2,
+  "use_cache": true,
+  "vocab_size": 30522
+}

model.safetensors

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:23a1a897f2dcc99d5e87b18621a3956a9c359dbf57011555f44f3333ea07c1d1
+size 435691444

runs/Dec23_17-46-33_fae125109bef/events.out.tfevents.1703353594.fae125109bef.559.0

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:9d7f34950a1cfdd25c4d4f8f9c1befadeac7a1ee854916d4c233d37c69477fa7
+size 6712

special_tokens_map.json

@@ -0,0 +1,7 @@
+{
+  "cls_token": "[CLS]",
+  "mask_token": "[MASK]",
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "unk_token": "[UNK]"
+}

tokenizer_config.json

@@ -0,0 +1,57 @@
+{
+  "added_tokens_decoder": {
+    "0": {
+      "content": "[PAD]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "1": {
+      "content": "[UNK]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "2": {
+      "content": "[CLS]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "3": {
+      "content": "[SEP]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "4": {
+      "content": "[MASK]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    }
+  },
+  "clean_up_tokenization_spaces": true,
+  "cls_token": "[CLS]",
+  "do_basic_tokenize": true,
+  "do_lower_case": true,
+  "mask_token": "[MASK]",
+  "model_max_length": 1000000000000000019884624838656,
+  "never_split": null,
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "strip_accents": null,
+  "tokenize_chinese_chars": true,
+  "tokenizer_class": "BertTokenizer",
+  "unk_token": "[UNK]"
+}

training_args.bin

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ed2988ebc47e6953943d266f1a66655f61b3ba1ff4c6904e2c206021e72c4739
+size 4600