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---
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license: mit
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---
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license: mit
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datasets:
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- jonghyunlee/ZINC15
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---
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# 🧪 Mol-GPT2; long context, pretrained with ZINC-15
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This repository hosts a GPT-2-based model for generating SMILES strings, trained on the ZINC 15 dataset. The model follows the architecture and hyperparameter setup of MolGPT (Bagal et al., 2021), and has been fine-tuned to generate valid molecular representations with high accuracy.
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This model has longer context length (256), whereas the previous model has maximum context lenght 128.
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---
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## 🔧 Model Architecture
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GPT2Config(
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vocab_size=10_000,
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n_positions=256,
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n_ctx=256,
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n_embd=256,
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n_layer=8,
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n_head=8,
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resid_pdrop=0.1,
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embd_pdrop=0.1,
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attn_pdrop=0.1,
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)
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- Pretrained with fp16 precision on 2× H100 GPUs
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- Batch size: 1,024
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- Max steps: 100,000
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- Warmup steps: 10,000
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- Evaluation every 10,000 steps
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---
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## 📊 Performance
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| Dataset/Metric | This Model | Short Context | MolGPT Baseline |
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|----------------------|------------|---------------|-----------------|
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| ZINC15 Validity | 99.76% | 99.68% | N/A |
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| MOSES Validity | N/A | N/A | 99.4% |
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| GuacaMol Validity | N/A | N/A | 98.1% |
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---
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## 🚀 Usage Example
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```
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from transformers import AutoTokenizer, AutoModelForCausalLM
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# Load tokenizer and model
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tokenizer = AutoTokenizer.from_pretrained("your-username/smiles-tokenizer")
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model = AutoModelForCausalLM.from_pretrained("your-username/molgpt-lite")
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# Generate molecules
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input_ids = tokenizer("CC(=O)OC1=CC=CC=C1C(=O)O", return_tensors="pt").input_ids
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outputs = model.generate(input_ids, max_length=256, do_sample=True, top_k=50)
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print(tokenizer.decode(outputs[0], skip_special_tokens=True))
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```
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