---
pretty_name: GeneCAD Development Data
license: other
task_categories:
- token-classification
- text-generation
tags:
- genomics
- gene-prediction
- plants
- animals
---

# GeneCAD Development Data

This dataset contains FASTA genome sequence files and GFF/GFF3 annotation files used for GeneCAD development, plus GeneCAD prediction outputs.

## Contents

- `data/plant/`: plant FASTA and GFF files for training, full-genome evaluation inputs, and examples.
- `data/animal/`: animal FASTA and GFF files for training and evaluation.
- `data/plant/fasta/evaluation_full/` and `data/plant/gff/evaluation_full/`: full-genome plant FASTA/GFF inputs corresponding to the plant prediction outputs.
- `predictions/prediction_genecad_emarro_5species/`: GeneCAD prediction FASTA/GFF outputs from the 5-species run.
- `predictions/prediction_genecad_emarro_10species/Arabidopsis/`: Arabidopsis prediction GFF outputs from the 10-species run.
- `prediction_files.csv`: an index of the added prediction FASTA/GFF files with species, region, size, and repository path.

Only FASTA and GFF-style files are included for the prediction results. Pipeline intermediates, BUSCO evaluation outputs, checkpoints, Zarr arrays, BigWig tracks, logs, and other generated artifacts are intentionally excluded.