#!/bin/bash
# Full remaining pipeline, run sequentially so nothing competes for the GPU.
# Idempotent: run_experiments skips configs whose summary.json already exists.
set -u
cd /root/al
export PYTHONPATH=src
LOG=results/logs

echo "[finish] $(date +%H:%M:%S) main grid ..."
python scripts/run_experiments.py --grid main --device cuda >> "$LOG/main_grid.log" 2>&1

echo "[finish] $(date +%H:%M:%S) ablation grid ..."
python scripts/run_experiments.py --grid ablation --device cuda >> "$LOG/ablation_grid.log" 2>&1

echo "[finish] $(date +%H:%M:%S) confound analysis ..."
python src/trifuse/analysis/confound.py data/metadata/subjects_clean.csv \
    results/tables/confound >> "$LOG/analysis.log" 2>&1

echo "[finish] $(date +%H:%M:%S) subgroup analysis (main-grid OOF) ..."
python - >> "$LOG/analysis.log" 2>&1 <<'PY'
import sys, glob; sys.path.insert(0, "src")
from pathlib import Path
from trifuse.analysis.subgroup import run_subgroup
oof = {Path(p).parent.name: p for p in glob.glob("results/*/oof.csv")}
print("subgroup over:", sorted(oof))
run_subgroup(oof, "data/metadata/subjects_clean.csv", "results/tables/subgroup")
PY

echo "[finish] $(date +%H:%M:%S) tables ..."
python scripts/make_tables.py >> "$LOG/tables.log" 2>&1

echo "[finish] $(date +%H:%M:%S) figures ..."
python scripts/make_figures.py >> "$LOG/figures.log" 2>&1

echo "[finish] $(date +%H:%M:%S) interpretability (Grad-CAM) ..."
python scripts/make_interpret.py >> "$LOG/interpret.log" 2>&1

echo "[finish] $(date +%H:%M:%S) DONE"