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README.md
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@@ -100,11 +100,10 @@ epidemiology. The dataset is designed for cross-sectional grading: predicting
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DR stage from a fundus image, optionally conditioned on the limited information
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available at the point of grading. We document the construction, the grounding
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literature, and a reproducible **distribution audit** that validates the
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synthetic context against its source effect sizes.
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or epidemiological findings.
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---
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populations they frequently degrade, a manifestation of dataset shift that is
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both a scientific and an equity problem.
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The **DR-Africa** family
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pressure, renal function), because those variables are the true drivers of
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incidence and progression. Real linked image–EHR cohorts from Africa are scarce,
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so we
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This repository, **DR-Grading**, is the entry point of the family and the
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narrowest in scope
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inputs realistically available *at the moment of grading* — the image plus three
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context fields — and the grade label. The richer systemic record lives in
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[`dr-progression`](../dr-progression); screening-prevalence evaluation lives in
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**Existing DR image datasets.** EyePACS, APTOS 2019, Messidor / Messidor-2,
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IDRiD, DDR, and DeepDRiD are the most widely used. They differ in grading
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protocol, image quality, and population
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**Epidemiology of DR in Africa.** Pooled SSA estimates place any-DR prevalence
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around 30–35% of people with diabetes and PDR at ~1% in population-based studies
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@@ -323,8 +321,8 @@ about real African patients.
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property of the generator, not evidence about patients.
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3. **Referral-skewed labels.** The class balance reflects a clinic/referral
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population, not screening; uncorrected accuracy overstates screening utility.
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4. **Minimal context
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---
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@@ -332,15 +330,14 @@ about real African patients.
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- **Synthetic data are flagged.** Every record carries `synthetic = True`. No
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attempt should be made to interpret a synthetic record as a real individual.
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- **Representation
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- **Data sovereignty.** The
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- **
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real-world data collection.
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---
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DR stage from a fundus image, optionally conditioned on the limited information
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available at the point of grading. We document the construction, the grounding
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literature, and a reproducible **distribution audit** that validates the
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synthetic context against its source effect sizes. Two boundaries should be
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clear: the images are not African, and the clinical context is synthetic and not
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patient-linked. The dataset is meant for building and testing grading pipelines
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and for teaching, not as a source of clinical or epidemiological findings.
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---
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populations they frequently degrade, a manifestation of dataset shift that is
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both a scientific and an equity problem.
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The **DR-Africa** family addresses this gap. Its first objective is a
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*multimodal* resource: DR research is moving beyond the image alone toward models
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that combine retinal imaging with systemic clinical variables (glycaemic control,
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diabetes duration, blood pressure, renal function), which are the main drivers of
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incidence and progression. Real linked image–EHR cohorts from Africa are scarce,
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so we start with **epidemiology-grounded synthetic** clinical data: synthetic
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records whose marginal distributions and conditional structure are taken from
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published SSA cohort studies and meta-analyses.
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This repository, **DR-Grading**, is the entry point of the family and the
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narrowest in scope (separation of concerns). It exposes only the
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inputs realistically available *at the moment of grading* — the image plus three
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context fields — and the grade label. The richer systemic record lives in
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[`dr-progression`](../dr-progression); screening-prevalence evaluation lives in
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**Existing DR image datasets.** EyePACS, APTOS 2019, Messidor / Messidor-2,
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IDRiD, DDR, and DeepDRiD are the most widely used. They differ in grading
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protocol, image quality, and population. None ships paired structured clinical
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data, and none is African in origin.
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**Epidemiology of DR in Africa.** Pooled SSA estimates place any-DR prevalence
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around 30–35% of people with diabetes and PDR at ~1% in population-based studies
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property of the generator, not evidence about patients.
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3. **Referral-skewed labels.** The class balance reflects a clinic/referral
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population, not screening; uncorrected accuracy overstates screening utility.
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4. **Minimal context.** Labs and comorbidities are not included here (they belong
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to `dr-progression`).
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---
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- **Synthetic data are flagged.** Every record carries `synthetic = True`. No
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attempt should be made to interpret a synthetic record as a real individual.
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- **Representation.** Calling a dataset "Africa-grounded" while the imagery is
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non-African could mislead, so we state the provenance plainly and treat the
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images only as a transfer-learning source.
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- **Data sovereignty.** The move toward real African imaging and linked records
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must follow local consent, ethics approval, and data-sovereignty principles.
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This synthetic dataset is a placeholder, not a substitute.
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- **Purpose.** The dataset exists to support DR research relevant to Africa by
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making multimodal work easier to start, not to replace real-world data collection.
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---
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