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Datasets:
lamm-mit
/
keratin-pdb

Modalities:
Tabular
Text
Formats:
parquet
Languages:
English
Size:
< 1K
Tags:
biology
protein
keratin
pdb
alphafold
structure
Libraries:
Datasets
pandas
Polars
License:
Dataset card Data Studio Files
xet
 Community
1
mjbuehler commited on
Commit
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1 Parent(s): e39626f

Upload keratin PDB dataset

Browse files
Files changed (2) hide show
  1. README.md +197 -0
  2. data/train-00000-of-00001.parquet +3 -0
README.md ADDED
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+ ---
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+ dataset_info:
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+ features:
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+ - name: source_csv_row_number
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+ dtype: int64
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+ - name: record_id
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+ dtype: string
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+ - name: gene_symbol
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+ dtype: string
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+ - name: uniprot_accession
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+ dtype: string
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+ - name: ncbi_taxon_id
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+ dtype: int64
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+ - name: organism_scientific_name
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+ dtype: string
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+ - name: organism_common_name
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+ dtype: string
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+ - name: keratin_type
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+ dtype: string
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+ - name: has_multimer_fasta
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+ dtype: bool
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+ - name: has_multimer_pdb
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+ dtype: bool
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+ - name: sequence_from_csv
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+ dtype: string
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+ - name: csv_sequence_string_length
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+ dtype: int64
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+ - name: csv_sequence_length
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+ dtype: int64
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+ - name: csv_sequence_length_field_matches_string
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+ dtype: bool
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+ - name: uniprot_url
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+ dtype: string
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+ - name: alphafold_url
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+ dtype: string
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+ - name: file_name
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+ dtype: string
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+ - name: relative_path
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+ dtype: string
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+ - name: file_size_bytes
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+ dtype: int64
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+ - name: file_mtime_utc
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+ dtype: string
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+ - name: file_sha256
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+ dtype: string
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+ - name: pdb_text
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+ dtype: string
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+ - name: pdb_format
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+ dtype: string
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+ - name: pdb_line_count
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+ dtype: int64
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+ - name: pdb_sha256
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+ dtype: string
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+ - name: header_classification
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+ dtype: 'null'
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+ - name: header_deposition_date
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+ dtype: string
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+ - name: header_id_code
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+ dtype: 'null'
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+ - name: title
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+ dtype: string
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+ - name: alphafold_model_pipeline
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+ dtype: string
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+ - name: compound_molecule
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+ dtype: string
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+ - name: compound_chain_field
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+ dtype: string
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+ - name: source_organism_scientific_name
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+ dtype: string
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+ - name: source_ncbi_taxon_id
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+ dtype: int64
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+ - name: dbref_records
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+ sequence: string
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+ - name: seqres_sequences_by_chain
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+ struct:
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+ - name: A
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+ dtype: string
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+ - name: seqres_chain_ids
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+ sequence: string
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+ - name: seqres_total_residue_count
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+ dtype: int64
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+ - name: model_count
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+ dtype: int64
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+ - name: model_numbers
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+ sequence: int64
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+ - name: chain_ids
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+ sequence: string
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+ - name: chain_count
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+ dtype: int64
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+ - name: atom_count
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+ dtype: int64
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+ - name: hetatm_count
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+ dtype: int64
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+ - name: residue_count
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+ dtype: int64
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+ - name: residue_counts_by_chain
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+ struct:
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+ - name: A
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+ dtype: int64
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+ - name: residue_names
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+ sequence: string
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+ - name: atom_element_counts
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+ struct:
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+ - name: C
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+ dtype: int64
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+ - name: N
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+ dtype: int64
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+ - name: O
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+ dtype: int64
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+ - name: S
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+ dtype: int64
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+ - name: ca_plddt_band_counts
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+ struct:
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+ - name: confident_70_to_90
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+ dtype: int64
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+ - name: low_50_to_70
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+ dtype: int64
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+ - name: very_high_ge_90
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+ dtype: int64
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+ - name: very_low_lt_50
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+ dtype: int64
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+ - name: ca_plddt_min
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+ dtype: float64
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+ - name: ca_plddt_max
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+ dtype: float64
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+ - name: ca_plddt_mean
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+ dtype: float64
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+ - name: ca_plddt_median
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+ dtype: float64
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+ - name: atom_b_factor_min
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+ dtype: float64
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+ - name: atom_b_factor_max
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+ dtype: float64
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+ - name: atom_b_factor_mean
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+ dtype: float64
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+ - name: atom_b_factor_median
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+ dtype: float64
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+ - name: coordinate_bounds_angstrom
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+ struct:
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+ - name: x_max
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+ dtype: float64
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+ - name: x_min
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+ dtype: float64
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+ - name: x_span
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+ dtype: float64
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+ - name: y_max
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+ dtype: float64
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+ - name: z_min
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+ dtype: float64
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+ - name: z_span
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+ dtype: float64
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+ - name: sequence
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+ dtype: string
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+ - name: sequence_length
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+ dtype: int64
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+ - name: sequence_sha256
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+ dtype: string
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+ - name: seqres_sequence_matches_csv
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+ dtype: bool
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+ - name: seqres_length_matches_csv_sequence_string
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+ dtype: bool
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+ - name: seqres_length_matches_csv
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+ dtype: bool
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+ - name: residue_count_matches_csv_length
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+ dtype: bool
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+ - name: residue_count_matches_seqres_length
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+ dtype: bool
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+ - name: companion_fasta_file_name
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+ dtype: string
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+ - name: companion_fasta_sequence_length
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+ dtype: int64
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+ - name: companion_fasta_sequence_sha256
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+ dtype: string
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+ - name: companion_fasta_sequence_matches_seqres
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+ dtype: bool
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+ - name: structure_source
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+ dtype: string
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+ - name: sequence_source
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+ dtype: string
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+ splits:
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+ - name: train
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+ num_bytes: 16359792
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+ num_examples: 51
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+ download_size: 6289084
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+ dataset_size: 16359792
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+ configs:
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+ - config_name: default
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+ data_files:
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+ - split: train
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+ path: data/train-*
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+ ---
data/train-00000-of-00001.parquet ADDED
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+ version https://git-lfs.github.com/spec/v1
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+ size 6289084