tcga-patients-open / TCGA-PRAD

Commit History

Add clinical_supplement struct column to patient rows (BCR biotab data: patient/follow_ups/ntes/drugs/radiations/ablations/omfs sub-fields, per-project schema). Patients view now surfaces the same BCR data the tabular view exposes.
bbcc13a
verified

gabrielaltay commited on

Schema cleanup: drop cdr_* + flat survival cols, add survival_derived struct (Liu et al. 2018 algorithm). Cards now share a single biospecimen-tree source of truth + new Survival endpoints section.
84a405c
verified

gabrielaltay commited on

Rebuild dfi_event/dfi_time with BCR biotab Clinical Supplement integration (97% reduction in under-population vs Liu's CDR; agreement rate 77.2% -> 90.1% with 30-day time tolerance)
63dd987
verified

gabrielaltay commited on

Full molecular for all 33 TCGA projects (11,428 patients)
ffb0adb
verified

gabrielaltay commited on

Add full molecular for batch 2: PCPG/ESCA/SARC/CESC/KIRP/GBM/LIHC/OV/BLCA/STAD
c651020
verified

gabrielaltay commited on

Add full molecular for batch 1: UCS/ACC/UVM/MESO/KICH/THYM/LAML/TGCT/READ/PAAD
c675117
verified

gabrielaltay commited on

Add clinical for all 33 TCGA projects (11,428 patients total)
b1e6996
verified

gabrielaltay commited on