"""Validate synthetic pharmacovigilance & adverse drug reaction dataset.""" from __future__ import annotations from pathlib import Path import matplotlib.pyplot as plt import pandas as pd SCENARIO_FILES = { "tertiary_hospital_pv": "pv_tertiary_hospital.csv", "community_primary_care": "pv_community_primary.csv", "mass_treatment_campaign": "pv_mass_treatment.csv", } COLORS = {"tertiary_hospital_pv": "#e6550d", "community_primary_care": "#756bb1", "mass_treatment_campaign": "#31a354"} def load_data() -> pd.DataFrame: frames = [] for scenario, filename in SCENARIO_FILES.items(): df = pd.read_csv(Path("data") / filename) frames.append(df) return pd.concat(frames, ignore_index=True) def plot_validation(df: pd.DataFrame, output_path: Path) -> None: fig, axes = plt.subplots(4, 2, figsize=(14, 16)) axes = axes.flatten() adr_cols = ["adr_occurred", "serious_adr", "hospitalisation_due_adr", "death_due_adr"] adr = df.groupby("scenario")[adr_cols].mean() * 100 adr.plot(kind="bar", ax=axes[0]) axes[0].set_title("ADR Occurrence & Severity (%)") axes[0].legend(fontsize=6) rep_cols = ["adr_reported", "reported_to_nmra", "vigiflow_submitted", "report_complete"] rep = df.groupby("scenario")[rep_cols].mean() * 100 rep.plot(kind="bar", ax=axes[1]) axes[1].set_title("Reporting Cascade (%)") axes[1].legend(fontsize=6) adr_df = df[df["adr_occurred"] == 1] if len(adr_df) > 0: at = adr_df.groupby(["scenario", "adr_type"]).size().groupby(level=0).apply(lambda s: s / s.sum()) at.unstack().plot(kind="bar", stacked=True, ax=axes[2]) axes[2].set_title("ADR Type Distribution") axes[2].legend(fontsize=4) dc = df.groupby(["scenario", "drug_class"]).size().groupby(level=0).apply(lambda s: s / s.sum()) dc.unstack().plot(kind="bar", stacked=True, ax=axes[3]) axes[3].set_title("Drug Class Distribution") axes[3].legend(fontsize=4) cap_cols = ["pv_focal_person", "adr_form_available", "pv_training_received", "knows_reporting_process"] cap = df.groupby("scenario")[cap_cols].mean() * 100 cap.plot(kind="bar", ax=axes[4]) axes[4].set_title("PV System Capacity (%)") axes[4].legend(fontsize=6) err_cols = ["medication_error"] err = df.groupby("scenario")[err_cols].mean() * 100 err.plot(kind="bar", ax=axes[5]) axes[5].set_title("Medication Error Rate (%)") axes[5].legend(fontsize=7) if len(adr_df) > 0: sev = adr_df.groupby(["scenario", "adr_severity"]).size().groupby(level=0).apply(lambda s: s / s.sum()) sev.unstack().plot(kind="bar", stacked=True, ax=axes[6]) axes[6].set_title("ADR Severity Distribution") axes[6].legend(fontsize=7) rep_adr = df[df["adr_reported"] == 1] if len(rep_adr) > 0: rt = rep_adr.groupby(["scenario", "reporter_type"]).size().groupby(level=0).apply(lambda s: s / s.sum()) rt.unstack().plot(kind="bar", stacked=True, ax=axes[7]) axes[7].set_title("Reporter Type Distribution") axes[7].legend(fontsize=6) plt.tight_layout() fig.savefig(output_path, dpi=200) plt.close(fig) def main() -> None: df = load_data() plot_validation(df, Path("validation_report.png")) print("Saved validation_report.png") if __name__ == "__main__": main()