# APED - African Protein Engineering Dataset
# Reproducibility Requirements

# Core data processing
pandas>=2.0.0
numpy>=1.24.0
pyarrow>=12.0.0

# Protein analysis
biopython>=1.81

# Structure analysis
biotite>=0.37.0

# ML/Dataset
datasets>=2.14.0
huggingface_hub>=0.16.0

# Visualization
matplotlib>=3.7.0
seaborn>=0.12.0

# Jupyter
jupyter>=1.0.0
ipywidgets>=8.0.0

# Optional: Local structure prediction
# esmfold (requires separate installation)
# colabfold (use Colab notebooks)