{ "@context": { "@language": "en", "@vocab": "https://schema.org/", "cr": "http://mlcommons.org/croissant/", "rai": "http://mlcommons.org/croissant/RAI/", "data": { "@id": "cr:data", "@type": "@json" }, "dct": "http://purl.org/dc/terms/", "examples": { "@id": "cr:examples", "@type": "@json" }, "extract": "cr:extract", "field": "cr:field", "fileObject": "cr:fileObject", "fileSet": "cr:fileSet", "format": "cr:format", "includes": "cr:includes", "isLiveDataset": "cr:isLiveDataset", "jsonPath": "cr:jsonPath", "key": "cr:key", "md5": "cr:md5", "parentField": "cr:parentField", "path": "cr:path", "recordSet": "cr:recordSet", "references": "cr:references", "regex": "cr:regex", "repeated": "cr:repeated", "replace": "cr:replace", "sc": "https://schema.org/", "separator": "cr:separator", "source": "cr:source", "subField": "cr:subField", "transform": "cr:transform" }, "@type": "sc:Dataset", "name": "cp-bg-bench-jump-sd", "description": "CP-BG-Bench JUMP view SD (background-masked + density-augmented cell crop). Single-cell Cell Painting tiles from the JUMP-CP consortium, released as one of four paired views (C, S, CD, SD) for the CP-BG-Bench evaluation framework.", "conformsTo": "http://mlcommons.org/croissant/1.0", "license": "https://creativecommons.org/publicdomain/zero/1.0/", "url": "https://huggingface.co/datasets/anonymous/cp-bg-bench-jump", "creator": { "@type": "Organization", "name": "anonymous" }, "publisher": { "@type": "Organization", "name": "anonymous" }, "citeAs": "Anonymous submission to NeurIPS 2026 Datasets & Benchmarks Track.", "datePublished": "2026-05-05", "version": "1.0.0", "keywords": [ "Cell Painting", "JUMP-CP", "single-cell", "microscopy", "representation learning" ], "rai:dataCollection": "Single-cell tiles were extracted from the JUMP-CP consortium image release (Chandrasekaran et al.). Cells were segmented at the FOV level, cropped at 150x150 px around the segmented centroid, and resized to 224x224. Per-FOV percentile normalisation was applied before quantisation to uint8.", "rai:dataPreprocessingProtocol": "QC filters on (nuc_area, cyto_area, nuc_cyto_ratio) at percentiles [0.025, 0.975]. Per-(perturbation x experimental batch) cell cap of approximately 100 cells. Density-augmented views (CD, SD) encode per-cell local FOV density.", "rai:dataUseCases": "Benchmarking representation learning models on single-cell morphology under perturbation; evaluating cell-vs-background contributions to learned representations.", "rai:dataLimitations": "Cells from one cell line (U2OS), one assay (Cell Painting), one consortium (JUMP-CP). Channel order is the standard JUMP order and should be confirmed against the upstream pipeline before use. Quantisation to uint8 was applied during tile extraction.", "rai:dataBiases": "Compound coverage follows the JUMP-CP Target2 + Compound plate design and is biased toward annotated chemical probes and drug-like molecules. Source (JUMP partner) is a known major covariate that should be controlled in evaluation.", "rai:annotationsPerItem": "0", "rai:personalSensitiveInformation": "None", "distribution": [ { "@type": "cr:FileSet", "@id": "shards", "name": "shards", "description": "WebDataset tar shards.", "containedIn": { "@id": "https://huggingface.co/datasets/anonymous/cp-bg-bench-jump" }, "encodingFormat": "application/x-tar", "includes": "data/shard-*.tar" } ], "recordSet": [ { "@type": "cr:RecordSet", "@id": "cells", "name": "cells", "description": "One row per single-cell tile.", "field": [ { "@type": "cr:Field", "@id": "cells/row_key", "name": "row_key", "dataType": "sc:Text", "description": "Stable per-cell identifier." }, { "@type": "cr:Field", "@id": "cells/cell", "name": "cell.bin", "dataType": "sc:ImageObject", "description": "Raw uint8 bytes, shape (5, 224, 224), channel-first. View-specific image content." }, { "@type": "cr:Field", "@id": "cells/mask", "name": "mask.bin", "dataType": "sc:ImageObject", "description": "Raw uint8 bytes, shape (2, 224, 224), channel-first. Segmentation mask (nucleus, cell)." }, { "@type": "cr:Field", "@id": "cells/perturbation", "name": "perturbation", "dataType": "sc:Text", "description": "Compound InChIKey." }, { "@type": "cr:Field", "@id": "cells/source", "name": "source", "dataType": "sc:Text", "description": "JUMP partner identifier." }, { "@type": "cr:Field", "@id": "cells/plate", "name": "plate", "dataType": "sc:Text", "description": "JUMP plate identifier." }, { "@type": "cr:Field", "@id": "cells/Metadata_PlateType", "name": "Metadata_PlateType", "dataType": "sc:Text", "description": "TARGET2 or COMPOUND." } ] } ] }