Update data: 5 units

- computing_math/mp_checkpoint_consolidation_v2/base/software
- computing_math/newyear_keygen2/base/input
- computing_math/newyear_keygen2/base/software
- computing_math/paper_reproduction_instance_1/base/input
- computing_math/paper_reproduction_instance_1/base/software

.gitattributes

@@ -1380,3 +1380,5 @@ tasks/visual_media/project_migration/celeste_symphonic_suite/input/project.cpr f
 *.ZIP filter=lfs diff=lfs merge=lfs -text
 tasks/business_finance/basel_operational_risk_bia_cn/base/software/python3 filter=lfs diff=lfs merge=lfs -text
 tasks/computing_math/go_game_reconstruction_1/base/software/sabaki-v0.52.2-linux-x64.AppImage filter=lfs diff=lfs merge=lfs -text
+tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/bin/python filter=lfs diff=lfs merge=lfs -text
+tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/bin/python3 filter=lfs diff=lfs merge=lfs -text

tasks/computing_math/mp_checkpoint_consolidation_v2/base/software/README.txt

@@ -0,0 +1,2 @@
+No extra solve-time software is preinstalled for this task beyond the VM's system Python, uv, and torch.
+If you want a task-local environment for checkpoint export, use the staged manifest under input/runtime_env/.

tasks/computing_math/newyear_keygen2/base/software/README.txt

@@ -0,0 +1 @@
+No extra task-local shortcuts are required. Launch the input executable directly.

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/bin/Activate.ps1

@@ -0,0 +1,247 @@
+<#
+.Synopsis
+Activate a Python virtual environment for the current PowerShell session.
+
+.Description
+Pushes the python executable for a virtual environment to the front of the
+$Env:PATH environment variable and sets the prompt to signify that you are
+in a Python virtual environment. Makes use of the command line switches as
+well as the `pyvenv.cfg` file values present in the virtual environment.
+
+.Parameter VenvDir
+Path to the directory that contains the virtual environment to activate. The
+default value for this is the parent of the directory that the Activate.ps1
+script is located within.
+
+.Parameter Prompt
+The prompt prefix to display when this virtual environment is activated. By
+default, this prompt is the name of the virtual environment folder (VenvDir)
+surrounded by parentheses and followed by a single space (ie. '(.venv) ').
+
+.Example
+Activate.ps1
+Activates the Python virtual environment that contains the Activate.ps1 script.
+
+.Example
+Activate.ps1 -Verbose
+Activates the Python virtual environment that contains the Activate.ps1 script,
+and shows extra information about the activation as it executes.
+
+.Example
+Activate.ps1 -VenvDir C:\Users\MyUser\Common\.venv
+Activates the Python virtual environment located in the specified location.
+
+.Example
+Activate.ps1 -Prompt "MyPython"
+Activates the Python virtual environment that contains the Activate.ps1 script,
+and prefixes the current prompt with the specified string (surrounded in
+parentheses) while the virtual environment is active.
+
+.Notes
+On Windows, it may be required to enable this Activate.ps1 script by setting the
+execution policy for the user. You can do this by issuing the following PowerShell
+command:
+
+PS C:\> Set-ExecutionPolicy -ExecutionPolicy RemoteSigned -Scope CurrentUser
+
+For more information on Execution Policies: 
+https://go.microsoft.com/fwlink/?LinkID=135170
+
+#>
+Param(
+    [Parameter(Mandatory = $false)]
+    [String]
+    $VenvDir,
+    [Parameter(Mandatory = $false)]
+    [String]
+    $Prompt
+)
+
+<# Function declarations --------------------------------------------------- #>
+
+<#
+.Synopsis
+Remove all shell session elements added by the Activate script, including the
+addition of the virtual environment's Python executable from the beginning of
+the PATH variable.
+
+.Parameter NonDestructive
+If present, do not remove this function from the global namespace for the
+session.
+
+#>
+function global:deactivate ([switch]$NonDestructive) {
+    # Revert to original values
+
+    # The prior prompt:
+    if (Test-Path -Path Function:_OLD_VIRTUAL_PROMPT) {
+        Copy-Item -Path Function:_OLD_VIRTUAL_PROMPT -Destination Function:prompt
+        Remove-Item -Path Function:_OLD_VIRTUAL_PROMPT
+    }
+
+    # The prior PYTHONHOME:
+    if (Test-Path -Path Env:_OLD_VIRTUAL_PYTHONHOME) {
+        Copy-Item -Path Env:_OLD_VIRTUAL_PYTHONHOME -Destination Env:PYTHONHOME
+        Remove-Item -Path Env:_OLD_VIRTUAL_PYTHONHOME
+    }
+
+    # The prior PATH:
+    if (Test-Path -Path Env:_OLD_VIRTUAL_PATH) {
+        Copy-Item -Path Env:_OLD_VIRTUAL_PATH -Destination Env:PATH
+        Remove-Item -Path Env:_OLD_VIRTUAL_PATH
+    }
+
+    # Just remove the VIRTUAL_ENV altogether:
+    if (Test-Path -Path Env:VIRTUAL_ENV) {
+        Remove-Item -Path env:VIRTUAL_ENV
+    }
+
+    # Just remove VIRTUAL_ENV_PROMPT altogether.
+    if (Test-Path -Path Env:VIRTUAL_ENV_PROMPT) {
+        Remove-Item -Path env:VIRTUAL_ENV_PROMPT
+    }
+
+    # Just remove the _PYTHON_VENV_PROMPT_PREFIX altogether:
+    if (Get-Variable -Name "_PYTHON_VENV_PROMPT_PREFIX" -ErrorAction SilentlyContinue) {
+        Remove-Variable -Name _PYTHON_VENV_PROMPT_PREFIX -Scope Global -Force
+    }
+
+    # Leave deactivate function in the global namespace if requested:
+    if (-not $NonDestructive) {
+        Remove-Item -Path function:deactivate
+    }
+}
+
+<#
+.Description
+Get-PyVenvConfig parses the values from the pyvenv.cfg file located in the
+given folder, and returns them in a map.
+
+For each line in the pyvenv.cfg file, if that line can be parsed into exactly
+two strings separated by `=` (with any amount of whitespace surrounding the =)
+then it is considered a `key = value` line. The left hand string is the key,
+the right hand is the value.
+
+If the value starts with a `'` or a `"` then the first and last character is
+stripped from the value before being captured.
+
+.Parameter ConfigDir
+Path to the directory that contains the `pyvenv.cfg` file.
+#>
+function Get-PyVenvConfig(
+    [String]
+    $ConfigDir
+) {
+    Write-Verbose "Given ConfigDir=$ConfigDir, obtain values in pyvenv.cfg"
+
+    # Ensure the file exists, and issue a warning if it doesn't (but still allow the function to continue).
+    $pyvenvConfigPath = Join-Path -Resolve -Path $ConfigDir -ChildPath 'pyvenv.cfg' -ErrorAction Continue
+
+    # An empty map will be returned if no config file is found.
+    $pyvenvConfig = @{ }
+
+    if ($pyvenvConfigPath) {
+
+        Write-Verbose "File exists, parse `key = value` lines"
+        $pyvenvConfigContent = Get-Content -Path $pyvenvConfigPath
+
+        $pyvenvConfigContent | ForEach-Object {
+            $keyval = $PSItem -split "\s*=\s*", 2
+            if ($keyval[0] -and $keyval[1]) {
+                $val = $keyval[1]
+
+                # Remove extraneous quotations around a string value.
+                if ("'""".Contains($val.Substring(0, 1))) {
+                    $val = $val.Substring(1, $val.Length - 2)
+                }
+
+                $pyvenvConfig[$keyval[0]] = $val
+                Write-Verbose "Adding Key: '$($keyval[0])'='$val'"
+            }
+        }
+    }
+    return $pyvenvConfig
+}
+
+
+<# Begin Activate script --------------------------------------------------- #>
+
+# Determine the containing directory of this script
+$VenvExecPath = Split-Path -Parent $MyInvocation.MyCommand.Definition
+$VenvExecDir = Get-Item -Path $VenvExecPath
+
+Write-Verbose "Activation script is located in path: '$VenvExecPath'"
+Write-Verbose "VenvExecDir Fullname: '$($VenvExecDir.FullName)"
+Write-Verbose "VenvExecDir Name: '$($VenvExecDir.Name)"
+
+# Set values required in priority: CmdLine, ConfigFile, Default
+# First, get the location of the virtual environment, it might not be
+# VenvExecDir if specified on the command line.
+if ($VenvDir) {
+    Write-Verbose "VenvDir given as parameter, using '$VenvDir' to determine values"
+}
+else {
+    Write-Verbose "VenvDir not given as a parameter, using parent directory name as VenvDir."
+    $VenvDir = $VenvExecDir.Parent.FullName.TrimEnd("\\/")
+    Write-Verbose "VenvDir=$VenvDir"
+}
+
+# Next, read the `pyvenv.cfg` file to determine any required value such
+# as `prompt`.
+$pyvenvCfg = Get-PyVenvConfig -ConfigDir $VenvDir
+
+# Next, set the prompt from the command line, or the config file, or
+# just use the name of the virtual environment folder.
+if ($Prompt) {
+    Write-Verbose "Prompt specified as argument, using '$Prompt'"
+}
+else {
+    Write-Verbose "Prompt not specified as argument to script, checking pyvenv.cfg value"
+    if ($pyvenvCfg -and $pyvenvCfg['prompt']) {
+        Write-Verbose "  Setting based on value in pyvenv.cfg='$($pyvenvCfg['prompt'])'"
+        $Prompt = $pyvenvCfg['prompt'];
+    }
+    else {
+        Write-Verbose "  Setting prompt based on parent's directory's name. (Is the directory name passed to venv module when creating the virtual environment)"
+        Write-Verbose "  Got leaf-name of $VenvDir='$(Split-Path -Path $venvDir -Leaf)'"
+        $Prompt = Split-Path -Path $venvDir -Leaf
+    }
+}
+
+Write-Verbose "Prompt = '$Prompt'"
+Write-Verbose "VenvDir='$VenvDir'"
+
+# Deactivate any currently active virtual environment, but leave the
+# deactivate function in place.
+deactivate -nondestructive
+
+# Now set the environment variable VIRTUAL_ENV, used by many tools to determine
+# that there is an activated venv.
+$env:VIRTUAL_ENV = $VenvDir
+
+if (-not $Env:VIRTUAL_ENV_DISABLE_PROMPT) {
+
+    Write-Verbose "Setting prompt to '$Prompt'"
+
+    # Set the prompt to include the env name
+    # Make sure _OLD_VIRTUAL_PROMPT is global
+    function global:_OLD_VIRTUAL_PROMPT { "" }
+    Copy-Item -Path function:prompt -Destination function:_OLD_VIRTUAL_PROMPT
+    New-Variable -Name _PYTHON_VENV_PROMPT_PREFIX -Description "Python virtual environment prompt prefix" -Scope Global -Option ReadOnly -Visibility Public -Value $Prompt
+
+    function global:prompt {
+        Write-Host -NoNewline -ForegroundColor Green "($_PYTHON_VENV_PROMPT_PREFIX) "
+        _OLD_VIRTUAL_PROMPT
+    }
+    $env:VIRTUAL_ENV_PROMPT = $Prompt
+}
+
+# Clear PYTHONHOME
+if (Test-Path -Path Env:PYTHONHOME) {
+    Copy-Item -Path Env:PYTHONHOME -Destination Env:_OLD_VIRTUAL_PYTHONHOME
+    Remove-Item -Path Env:PYTHONHOME
+}
+
+# Add the venv to the PATH
+Copy-Item -Path Env:PATH -Destination Env:_OLD_VIRTUAL_PATH
+$Env:PATH = "$VenvExecDir$([System.IO.Path]::PathSeparator)$Env:PATH"

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/bin/activate

@@ -0,0 +1,69 @@
+# This file must be used with "source bin/activate" *from bash*
+# you cannot run it directly
+
+deactivate () {
+    # reset old environment variables
+    if [ -n "${_OLD_VIRTUAL_PATH:-}" ] ; then
+        PATH="${_OLD_VIRTUAL_PATH:-}"
+        export PATH
+        unset _OLD_VIRTUAL_PATH
+    fi
+    if [ -n "${_OLD_VIRTUAL_PYTHONHOME:-}" ] ; then
+        PYTHONHOME="${_OLD_VIRTUAL_PYTHONHOME:-}"
+        export PYTHONHOME
+        unset _OLD_VIRTUAL_PYTHONHOME
+    fi
+
+    # This should detect bash and zsh, which have a hash command that must
+    # be called to get it to forget past commands.  Without forgetting
+    # past commands the $PATH changes we made may not be respected
+    if [ -n "${BASH:-}" -o -n "${ZSH_VERSION:-}" ] ; then
+        hash -r 2> /dev/null
+    fi
+
+    if [ -n "${_OLD_VIRTUAL_PS1:-}" ] ; then
+        PS1="${_OLD_VIRTUAL_PS1:-}"
+        export PS1
+        unset _OLD_VIRTUAL_PS1
+    fi
+
+    unset VIRTUAL_ENV
+    unset VIRTUAL_ENV_PROMPT
+    if [ ! "${1:-}" = "nondestructive" ] ; then
+    # Self destruct!
+        unset -f deactivate
+    fi
+}
+
+# unset irrelevant variables
+deactivate nondestructive
+
+VIRTUAL_ENV=/media/user/data/agenthle/machine_learning/paper_reproduction_instance_1/base/software/.venv
+export VIRTUAL_ENV
+
+_OLD_VIRTUAL_PATH="$PATH"
+PATH="$VIRTUAL_ENV/"bin":$PATH"
+export PATH
+
+# unset PYTHONHOME if set
+# this will fail if PYTHONHOME is set to the empty string (which is bad anyway)
+# could use `if (set -u; : $PYTHONHOME) ;` in bash
+if [ -n "${PYTHONHOME:-}" ] ; then
+    _OLD_VIRTUAL_PYTHONHOME="${PYTHONHOME:-}"
+    unset PYTHONHOME
+fi
+
+if [ -z "${VIRTUAL_ENV_DISABLE_PROMPT:-}" ] ; then
+    _OLD_VIRTUAL_PS1="${PS1:-}"
+    PS1='(.venv) '"${PS1:-}"
+    export PS1
+    VIRTUAL_ENV_PROMPT='(.venv) '
+    export VIRTUAL_ENV_PROMPT
+fi
+
+# This should detect bash and zsh, which have a hash command that must
+# be called to get it to forget past commands.  Without forgetting
+# past commands the $PATH changes we made may not be respected
+if [ -n "${BASH:-}" -o -n "${ZSH_VERSION:-}" ] ; then
+    hash -r 2> /dev/null
+fi

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/bin/activate.csh

@@ -0,0 +1,26 @@
+# This file must be used with "source bin/activate.csh" *from csh*.
+# You cannot run it directly.
+# Created by Davide Di Blasi <davidedb@gmail.com>.
+# Ported to Python 3.3 venv by Andrew Svetlov <andrew.svetlov@gmail.com>
+
+alias deactivate 'test $?_OLD_VIRTUAL_PATH != 0 && setenv PATH "$_OLD_VIRTUAL_PATH" && unset _OLD_VIRTUAL_PATH; rehash; test $?_OLD_VIRTUAL_PROMPT != 0 && set prompt="$_OLD_VIRTUAL_PROMPT" && unset _OLD_VIRTUAL_PROMPT; unsetenv VIRTUAL_ENV; unsetenv VIRTUAL_ENV_PROMPT; test "\!:*" != "nondestructive" && unalias deactivate'
+
+# Unset irrelevant variables.
+deactivate nondestructive
+
+setenv VIRTUAL_ENV /media/user/data/agenthle/machine_learning/paper_reproduction_instance_1/base/software/.venv
+
+set _OLD_VIRTUAL_PATH="$PATH"
+setenv PATH "$VIRTUAL_ENV/"bin":$PATH"
+
+
+set _OLD_VIRTUAL_PROMPT="$prompt"
+
+if (! "$?VIRTUAL_ENV_DISABLE_PROMPT") then
+    set prompt = '(.venv) '"$prompt"
+    setenv VIRTUAL_ENV_PROMPT '(.venv) '
+endif
+
+alias pydoc python -m pydoc
+
+rehash

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/bin/activate.fish

@@ -0,0 +1,69 @@
+# This file must be used with "source <venv>/bin/activate.fish" *from fish*
+# (https://fishshell.com/); you cannot run it directly.
+
+function deactivate  -d "Exit virtual environment and return to normal shell environment"
+    # reset old environment variables
+    if test -n "$_OLD_VIRTUAL_PATH"
+        set -gx PATH $_OLD_VIRTUAL_PATH
+        set -e _OLD_VIRTUAL_PATH
+    end
+    if test -n "$_OLD_VIRTUAL_PYTHONHOME"
+        set -gx PYTHONHOME $_OLD_VIRTUAL_PYTHONHOME
+        set -e _OLD_VIRTUAL_PYTHONHOME
+    end
+
+    if test -n "$_OLD_FISH_PROMPT_OVERRIDE"
+        set -e _OLD_FISH_PROMPT_OVERRIDE
+        # prevents error when using nested fish instances (Issue #93858)
+        if functions -q _old_fish_prompt
+            functions -e fish_prompt
+            functions -c _old_fish_prompt fish_prompt
+            functions -e _old_fish_prompt
+        end
+    end
+
+    set -e VIRTUAL_ENV
+    set -e VIRTUAL_ENV_PROMPT
+    if test "$argv[1]" != "nondestructive"
+        # Self-destruct!
+        functions -e deactivate
+    end
+end
+
+# Unset irrelevant variables.
+deactivate nondestructive
+
+set -gx VIRTUAL_ENV /media/user/data/agenthle/machine_learning/paper_reproduction_instance_1/base/software/.venv
+
+set -gx _OLD_VIRTUAL_PATH $PATH
+set -gx PATH "$VIRTUAL_ENV/"bin $PATH
+
+# Unset PYTHONHOME if set.
+if set -q PYTHONHOME
+    set -gx _OLD_VIRTUAL_PYTHONHOME $PYTHONHOME
+    set -e PYTHONHOME
+end
+
+if test -z "$VIRTUAL_ENV_DISABLE_PROMPT"
+    # fish uses a function instead of an env var to generate the prompt.
+
+    # Save the current fish_prompt function as the function _old_fish_prompt.
+    functions -c fish_prompt _old_fish_prompt
+
+    # With the original prompt function renamed, we can override with our own.
+    function fish_prompt
+        # Save the return status of the last command.
+        set -l old_status $status
+
+        # Output the venv prompt; color taken from the blue of the Python logo.
+        printf "%s%s%s" (set_color 4B8BBE) '(.venv) ' (set_color normal)
+
+        # Restore the return status of the previous command.
+        echo "exit $old_status" | .
+        # Output the original/"old" prompt.
+        _old_fish_prompt
+    end
+
+    set -gx _OLD_FISH_PROMPT_OVERRIDE "$VIRTUAL_ENV"
+    set -gx VIRTUAL_ENV_PROMPT '(.venv) '
+end

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/bin/pip

@@ -0,0 +1,8 @@
+#!/media/user/data/agenthle/machine_learning/paper_reproduction_instance_1/base/software/.venv/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from pip._internal.cli.main import main
+if __name__ == '__main__':
+    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
+    sys.exit(main())

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/bin/pip3

@@ -0,0 +1,8 @@
+#!/media/user/data/agenthle/machine_learning/paper_reproduction_instance_1/base/software/.venv/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from pip._internal.cli.main import main
+if __name__ == '__main__':
+    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
+    sys.exit(main())

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/bin/pip3.10

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:66bb4f75027293a4232e5cbab60348fcc0f56b1ce05bcac73b0fde67a3c9bc37
+size 308

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/bin/python

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d6bca2b84e73c7775a0dd5e6a76899cfe4ee62863d7c8f88513811d1fda23f49
+size 5937704

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/bin/python3

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d6bca2b84e73c7775a0dd5e6a76899cfe4ee62863d7c8f88513811d1fda23f49
+size 5937704

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/bin/python3.10

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d6bca2b84e73c7775a0dd5e6a76899cfe4ee62863d7c8f88513811d1fda23f49
+size 5937704

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/bin/wheel

@@ -0,0 +1,8 @@
+#!/media/user/data/agenthle/machine_learning/paper_reproduction_instance_1/base/software/.venv/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from wheel._commands import main
+if __name__ == '__main__':
+    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
+    sys.exit(main())

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/lib/python3.10/site-packages/_distutils_hack/__init__.py

@@ -0,0 +1,239 @@
+# don't import any costly modules
+import os
+import sys
+
+report_url = (
+    "https://github.com/pypa/setuptools/issues/new?template=distutils-deprecation.yml"
+)
+
+
+def warn_distutils_present():
+    if 'distutils' not in sys.modules:
+        return
+    import warnings
+
+    warnings.warn(
+        "Distutils was imported before Setuptools, but importing Setuptools "
+        "also replaces the `distutils` module in `sys.modules`. This may lead "
+        "to undesirable behaviors or errors. To avoid these issues, avoid "
+        "using distutils directly, ensure that setuptools is installed in the "
+        "traditional way (e.g. not an editable install), and/or make sure "
+        "that setuptools is always imported before distutils."
+    )
+
+
+def clear_distutils():
+    if 'distutils' not in sys.modules:
+        return
+    import warnings
+
+    warnings.warn(
+        "Setuptools is replacing distutils. Support for replacing "
+        "an already imported distutils is deprecated. In the future, "
+        "this condition will fail. "
+        f"Register concerns at {report_url}"
+    )
+    mods = [
+        name
+        for name in sys.modules
+        if name == "distutils" or name.startswith("distutils.")
+    ]
+    for name in mods:
+        del sys.modules[name]
+
+
+def enabled():
+    """
+    Allow selection of distutils by environment variable.
+    """
+    which = os.environ.get('SETUPTOOLS_USE_DISTUTILS', 'local')
+    if which == 'stdlib':
+        import warnings
+
+        warnings.warn(
+            "Reliance on distutils from stdlib is deprecated. Users "
+            "must rely on setuptools to provide the distutils module. "
+            "Avoid importing distutils or import setuptools first, "
+            "and avoid setting SETUPTOOLS_USE_DISTUTILS=stdlib. "
+            f"Register concerns at {report_url}"
+        )
+    return which == 'local'
+
+
+def ensure_local_distutils():
+    import importlib
+
+    clear_distutils()
+
+    # With the DistutilsMetaFinder in place,
+    # perform an import to cause distutils to be
+    # loaded from setuptools._distutils. Ref #2906.
+    with shim():
+        importlib.import_module('distutils')
+
+    # check that submodules load as expected
+    core = importlib.import_module('distutils.core')
+    assert '_distutils' in core.__file__, core.__file__
+    assert 'setuptools._distutils.log' not in sys.modules
+
+
+def do_override():
+    """
+    Ensure that the local copy of distutils is preferred over stdlib.
+
+    See https://github.com/pypa/setuptools/issues/417#issuecomment-392298401
+    for more motivation.
+    """
+    if enabled():
+        warn_distutils_present()
+        ensure_local_distutils()
+
+
+class _TrivialRe:
+    def __init__(self, *patterns) -> None:
+        self._patterns = patterns
+
+    def match(self, string):
+        return all(pat in string for pat in self._patterns)
+
+
+class DistutilsMetaFinder:
+    def find_spec(self, fullname, path, target=None):
+        # optimization: only consider top level modules and those
+        # found in the CPython test suite.
+        if path is not None and not fullname.startswith('test.'):
+            return None
+
+        method_name = 'spec_for_{fullname}'.format(**locals())
+        method = getattr(self, method_name, lambda: None)
+        return method()
+
+    def spec_for_distutils(self):
+        if self.is_cpython():
+            return None
+
+        import importlib
+        import importlib.abc
+        import importlib.util
+
+        try:
+            mod = importlib.import_module('setuptools._distutils')
+        except Exception:
+            # There are a couple of cases where setuptools._distutils
+            # may not be present:
+            # - An older Setuptools without a local distutils is
+            #   taking precedence. Ref #2957.
+            # - Path manipulation during sitecustomize removes
+            #   setuptools from the path but only after the hook
+            #   has been loaded. Ref #2980.
+            # In either case, fall back to stdlib behavior.
+            return None
+
+        class DistutilsLoader(importlib.abc.Loader):
+            def create_module(self, spec):
+                mod.__name__ = 'distutils'
+                return mod
+
+            def exec_module(self, module):
+                pass
+
+        return importlib.util.spec_from_loader(
+            'distutils', DistutilsLoader(), origin=mod.__file__
+        )
+
+    @staticmethod
+    def is_cpython():
+        """
+        Suppress supplying distutils for CPython (build and tests).
+        Ref #2965 and #3007.
+        """
+        return os.path.isfile('pybuilddir.txt')
+
+    def spec_for_pip(self):
+        """
+        Ensure stdlib distutils when running under pip.
+        See pypa/pip#8761 for rationale.
+        """
+        if sys.version_info >= (3, 12) or self.pip_imported_during_build():
+            return
+        clear_distutils()
+        self.spec_for_distutils = lambda: None
+
+    @classmethod
+    def pip_imported_during_build(cls):
+        """
+        Detect if pip is being imported in a build script. Ref #2355.
+        """
+        import traceback
+
+        return any(
+            cls.frame_file_is_setup(frame) for frame, line in traceback.walk_stack(None)
+        )
+
+    @staticmethod
+    def frame_file_is_setup(frame):
+        """
+        Return True if the indicated frame suggests a setup.py file.
+        """
+        # some frames may not have __file__ (#2940)
+        return frame.f_globals.get('__file__', '').endswith('setup.py')
+
+    def spec_for_sensitive_tests(self):
+        """
+        Ensure stdlib distutils when running select tests under CPython.
+
+        python/cpython#91169
+        """
+        clear_distutils()
+        self.spec_for_distutils = lambda: None
+
+    sensitive_tests = (
+        [
+            'test.test_distutils',
+            'test.test_peg_generator',
+            'test.test_importlib',
+        ]
+        if sys.version_info < (3, 10)
+        else [
+            'test.test_distutils',
+        ]
+    )
+
+
+for name in DistutilsMetaFinder.sensitive_tests:
+    setattr(
+        DistutilsMetaFinder,
+        f'spec_for_{name}',
+        DistutilsMetaFinder.spec_for_sensitive_tests,
+    )
+
+
+DISTUTILS_FINDER = DistutilsMetaFinder()
+
+
+def add_shim():
+    DISTUTILS_FINDER in sys.meta_path or insert_shim()
+
+
+class shim:
+    def __enter__(self) -> None:
+        insert_shim()
+
+    def __exit__(self, exc: object, value: object, tb: object) -> None:
+        _remove_shim()
+
+
+def insert_shim():
+    sys.meta_path.insert(0, DISTUTILS_FINDER)
+
+
+def _remove_shim():
+    try:
+        sys.meta_path.remove(DISTUTILS_FINDER)
+    except ValueError:
+        pass
+
+
+if sys.version_info < (3, 12):
+    # DistutilsMetaFinder can only be disabled in Python < 3.12 (PEP 632)
+    remove_shim = _remove_shim

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/lib/python3.10/site-packages/_distutils_hack/__pycache__/__init__.cpython-310.pyc

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tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/lib/python3.10/site-packages/distutils-precedence.pth

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+version https://git-lfs.github.com/spec/v1
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tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/lib/python3.10/site-packages/packaging-26.2.dist-info/INSTALLER

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+pip

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/lib/python3.10/site-packages/packaging-26.2.dist-info/METADATA

@@ -0,0 +1,112 @@
+Metadata-Version: 2.4
+Name: packaging
+Version: 26.2
+Summary: Core utilities for Python packages
+Author-email: Donald Stufft <donald@stufft.io>
+Requires-Python: >=3.8
+Description-Content-Type: text/x-rst
+License-Expression: Apache-2.0 OR BSD-2-Clause
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Intended Audience :: Developers
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Programming Language :: Python :: 3.8
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Classifier: Programming Language :: Python :: Implementation :: CPython
+Classifier: Programming Language :: Python :: Implementation :: PyPy
+Classifier: Programming Language :: Python :: Free Threading :: 4 - Resilient
+Classifier: Typing :: Typed
+License-File: LICENSE
+License-File: LICENSE.APACHE
+License-File: LICENSE.BSD
+Project-URL: Documentation, https://packaging.pypa.io/
+Project-URL: Source, https://github.com/pypa/packaging
+
+packaging
+=========
+
+.. start-intro
+
+Reusable core utilities for various Python Packaging
+`interoperability specifications <https://packaging.python.org/specifications/>`_.
+
+This library provides utilities that implement the interoperability
+specifications which have clearly one correct behaviour (eg: :pep:`440`)
+or benefit greatly from having a single shared implementation (eg: :pep:`425`).
+
+.. end-intro
+
+The ``packaging`` project includes the following: version handling, specifiers,
+markers, requirements, tags, metadata, lockfiles, utilities.
+
+Documentation
+-------------
+
+The `documentation`_ provides information and the API for the following:
+
+- Version Handling
+- Specifiers
+- Markers
+- Licenses
+- Requirements
+- Metadata
+- Tags
+- Lockfiles (pylock)
+- Direct URL helpers
+- Dependency groups
+- Errors
+- Utilities
+
+Installation
+------------
+
+Use ``pip`` to install these utilities::
+
+    pip install packaging
+
+The ``packaging`` library uses calendar-based versioning (``YY.N``).
+
+Discussion
+----------
+
+If you run into bugs, you can file them in our `issue tracker`_.
+
+You can also join discussions on `GitHub Discussions`_ to ask questions or get involved.
+
+.. _`documentation`: https://packaging.pypa.io/
+.. _`issue tracker`: https://github.com/pypa/packaging/issues
+.. _`GitHub Discussions`: https://github.com/pypa/packaging/discussions
+
+
+Code of Conduct
+---------------
+
+Everyone interacting in the packaging project's codebases, issue trackers, chat
+rooms, and mailing lists is expected to follow the `PSF Code of Conduct`_.
+
+.. _PSF Code of Conduct: https://github.com/pypa/.github/blob/main/CODE_OF_CONDUCT.md
+
+Contributing
+------------
+
+The ``CONTRIBUTING.rst`` file outlines how to contribute to this project as
+well as how to report a potential security issue. The documentation for this
+project also covers information about `project development`_ and `security`_.
+
+.. _`project development`: https://packaging.pypa.io/en/latest/development/
+.. _`security`: https://packaging.pypa.io/en/latest/security/
+
+Project History
+---------------
+
+Please review the ``CHANGELOG.rst`` file or the `Changelog documentation`_ for
+recent changes and project history.
+
+.. _`Changelog documentation`: https://packaging.pypa.io/en/latest/changelog/
+

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/lib/python3.10/site-packages/packaging-26.2.dist-info/RECORD

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tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/lib/python3.10/site-packages/packaging-26.2.dist-info/WHEEL

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+Wheel-Version: 1.0
+Generator: flit 3.12.0
+Root-Is-Purelib: true
+Tag: py3-none-any

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/lib/python3.10/site-packages/packaging-26.2.dist-info/licenses/LICENSE

@@ -0,0 +1,3 @@
+This software is made available under the terms of *either* of the licenses
+found in LICENSE.APACHE or LICENSE.BSD. Contributions to this software is made
+under the terms of *both* these licenses.

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/lib/python3.10/site-packages/packaging-26.2.dist-info/licenses/LICENSE.APACHE

@@ -0,0 +1,177 @@
+
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
+   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+   1. Definitions.
+
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+      any Contribution intentionally submitted for inclusion in the Work
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+      unless required by applicable law (such as deliberate and grossly
+      negligent acts) or agreed to in writing, shall any Contributor be
+      liable to You for damages, including any direct, indirect, special,
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+   END OF TERMS AND CONDITIONS

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/lib/python3.10/site-packages/packaging-26.2.dist-info/licenses/LICENSE.BSD

@@ -0,0 +1,23 @@
+Copyright (c) Donald Stufft and individual contributors.
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+    1. Redistributions of source code must retain the above copyright notice,
+       this list of conditions and the following disclaimer.
+
+    2. Redistributions in binary form must reproduce the above copyright
+       notice, this list of conditions and the following disclaimer in the
+       documentation and/or other materials provided with the distribution.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/lib/python3.10/site-packages/packaging/__init__.py

@@ -0,0 +1,15 @@
+# This file is dual licensed under the terms of the Apache License, Version
+# 2.0, and the BSD License. See the LICENSE file in the root of this repository
+# for complete details.
+
+__title__ = "packaging"
+__summary__ = "Core utilities for Python packages"
+__uri__ = "https://github.com/pypa/packaging"
+
+__version__ = "26.2"
+
+__author__ = "Donald Stufft and individual contributors"
+__email__ = "donald@stufft.io"
+
+__license__ = "BSD-2-Clause or Apache-2.0"
+__copyright__ = f"2014 {__author__}"

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tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/lib/python3.10/site-packages/packaging/_elffile.py

@@ -0,0 +1,108 @@
+"""
+ELF file parser.
+
+This provides a class ``ELFFile`` that parses an ELF executable in a similar
+interface to ``ZipFile``. Only the read interface is implemented.
+
+ELF header: https://refspecs.linuxfoundation.org/elf/gabi4+/ch4.eheader.html
+"""
+
+from __future__ import annotations
+
+import enum
+import os
+import struct
+from typing import IO
+
+
+class ELFInvalid(ValueError):
+    pass
+
+
+class EIClass(enum.IntEnum):
+    C32 = 1
+    C64 = 2
+
+
+class EIData(enum.IntEnum):
+    Lsb = 1
+    Msb = 2
+
+
+class EMachine(enum.IntEnum):
+    I386 = 3
+    S390 = 22
+    Arm = 40
+    X8664 = 62
+    AArc64 = 183
+
+
+class ELFFile:
+    """
+    Representation of an ELF executable.
+    """
+
+    def __init__(self, f: IO[bytes]) -> None:
+        self._f = f
+
+        try:
+            ident = self._read("16B")
+        except struct.error as e:
+            raise ELFInvalid("unable to parse identification") from e
+        magic = bytes(ident[:4])
+        if magic != b"\x7fELF":
+            raise ELFInvalid(f"invalid magic: {magic!r}")
+
+        self.capacity = ident[4]  # Format for program header (bitness).
+        self.encoding = ident[5]  # Data structure encoding (endianness).
+
+        try:
+            # e_fmt: Format for program header.
+            # p_fmt: Format for section header.
+            # p_idx: Indexes to find p_type, p_offset, and p_filesz.
+            e_fmt, self._p_fmt, self._p_idx = {
+                (1, 1): ("<HHIIIIIHHH", "<IIIIIIII", (0, 1, 4)),  # 32-bit LSB.
+                (1, 2): (">HHIIIIIHHH", ">IIIIIIII", (0, 1, 4)),  # 32-bit MSB.
+                (2, 1): ("<HHIQQQIHHH", "<IIQQQQQQ", (0, 2, 5)),  # 64-bit LSB.
+                (2, 2): (">HHIQQQIHHH", ">IIQQQQQQ", (0, 2, 5)),  # 64-bit MSB.
+            }[(self.capacity, self.encoding)]
+        except KeyError as e:
+            raise ELFInvalid(
+                f"unrecognized capacity ({self.capacity}) or encoding ({self.encoding})"
+            ) from e
+
+        try:
+            (
+                _,
+                self.machine,  # Architecture type.
+                _,
+                _,
+                self._e_phoff,  # Offset of program header.
+                _,
+                self.flags,  # Processor-specific flags.
+                _,
+                self._e_phentsize,  # Size of section.
+                self._e_phnum,  # Number of sections.
+            ) = self._read(e_fmt)
+        except struct.error as e:
+            raise ELFInvalid("unable to parse machine and section information") from e
+
+    def _read(self, fmt: str) -> tuple[int, ...]:
+        return struct.unpack(fmt, self._f.read(struct.calcsize(fmt)))
+
+    @property
+    def interpreter(self) -> str | None:
+        """
+        The path recorded in the ``PT_INTERP`` section header.
+        """
+        for index in range(self._e_phnum):
+            self._f.seek(self._e_phoff + self._e_phentsize * index)
+            try:
+                data = self._read(self._p_fmt)
+            except struct.error:
+                continue
+            if data[self._p_idx[0]] != 3:  # Not PT_INTERP.
+                continue
+            self._f.seek(data[self._p_idx[1]])
+            return os.fsdecode(self._f.read(data[self._p_idx[2]])).strip("\0")
+        return None

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/lib/python3.10/site-packages/packaging/_manylinux.py

@@ -0,0 +1,262 @@
+from __future__ import annotations
+
+import collections
+import contextlib
+import functools
+import os
+import re
+import sys
+import warnings
+from typing import Generator, Iterator, NamedTuple, Sequence
+
+from ._elffile import EIClass, EIData, ELFFile, EMachine
+
+EF_ARM_ABIMASK = 0xFF000000
+EF_ARM_ABI_VER5 = 0x05000000
+EF_ARM_ABI_FLOAT_HARD = 0x00000400
+
+_ALLOWED_ARCHS = {
+    "x86_64",
+    "aarch64",
+    "ppc64",
+    "ppc64le",
+    "s390x",
+    "loongarch64",
+    "riscv64",
+}
+
+
+# `os.PathLike` not a generic type until Python 3.9, so sticking with `str`
+# as the type for `path` until then.
+@contextlib.contextmanager
+def _parse_elf(path: str) -> Generator[ELFFile | None, None, None]:
+    try:
+        with open(path, "rb") as f:
+            yield ELFFile(f)
+    except (OSError, TypeError, ValueError):
+        yield None
+
+
+def _is_linux_armhf(executable: str) -> bool:
+    # hard-float ABI can be detected from the ELF header of the running
+    # process
+    # https://static.docs.arm.com/ihi0044/g/aaelf32.pdf
+    with _parse_elf(executable) as f:
+        return (
+            f is not None
+            and f.capacity == EIClass.C32
+            and f.encoding == EIData.Lsb
+            and f.machine == EMachine.Arm
+            and f.flags & EF_ARM_ABIMASK == EF_ARM_ABI_VER5
+            and f.flags & EF_ARM_ABI_FLOAT_HARD == EF_ARM_ABI_FLOAT_HARD
+        )
+
+
+def _is_linux_i686(executable: str) -> bool:
+    with _parse_elf(executable) as f:
+        return (
+            f is not None
+            and f.capacity == EIClass.C32
+            and f.encoding == EIData.Lsb
+            and f.machine == EMachine.I386
+        )
+
+
+def _have_compatible_abi(executable: str, archs: Sequence[str]) -> bool:
+    if "armv7l" in archs:
+        return _is_linux_armhf(executable)
+    if "i686" in archs:
+        return _is_linux_i686(executable)
+    return any(arch in _ALLOWED_ARCHS for arch in archs)
+
+
+# If glibc ever changes its major version, we need to know what the last
+# minor version was, so we can build the complete list of all versions.
+# For now, guess what the highest minor version might be, assume it will
+# be 50 for testing. Once this actually happens, update the dictionary
+# with the actual value.
+_LAST_GLIBC_MINOR: dict[int, int] = collections.defaultdict(lambda: 50)
+
+
+class _GLibCVersion(NamedTuple):
+    major: int
+    minor: int
+
+
+def _glibc_version_string_confstr() -> str | None:
+    """
+    Primary implementation of glibc_version_string using os.confstr.
+    """
+    # os.confstr is quite a bit faster than ctypes.DLL. It's also less likely
+    # to be broken or missing. This strategy is used in the standard library
+    # platform module.
+    # https://github.com/python/cpython/blob/fcf1d003bf4f0100c/Lib/platform.py#L175-L183
+    try:
+        # Should be a string like "glibc 2.17".
+        version_string: str | None = os.confstr("CS_GNU_LIBC_VERSION")
+        assert version_string is not None
+        _, version = version_string.rsplit()
+    except (AssertionError, AttributeError, OSError, ValueError):
+        # os.confstr() or CS_GNU_LIBC_VERSION not available (or a bad value)...
+        return None
+    return version
+
+
+def _glibc_version_string_ctypes() -> str | None:
+    """
+    Fallback implementation of glibc_version_string using ctypes.
+    """
+    try:
+        import ctypes  # noqa: PLC0415
+    except ImportError:
+        return None
+
+    # ctypes.CDLL(None) internally calls dlopen(NULL), and as the dlopen
+    # manpage says, "If filename is NULL, then the returned handle is for the
+    # main program". This way we can let the linker do the work to figure out
+    # which libc our process is actually using.
+    #
+    # We must also handle the special case where the executable is not a
+    # dynamically linked executable. This can occur when using musl libc,
+    # for example. In this situation, dlopen() will error, leading to an
+    # OSError. Interestingly, at least in the case of musl, there is no
+    # errno set on the OSError. The single string argument used to construct
+    # OSError comes from libc itself and is therefore not portable to
+    # hard code here. In any case, failure to call dlopen() means we
+    # can proceed, so we bail on our attempt.
+    try:
+        process_namespace = ctypes.CDLL(None)
+    except OSError:
+        return None
+
+    try:
+        gnu_get_libc_version = process_namespace.gnu_get_libc_version
+    except AttributeError:
+        # Symbol doesn't exist -> therefore, we are not linked to
+        # glibc.
+        return None
+
+    # Call gnu_get_libc_version, which returns a string like "2.5"
+    gnu_get_libc_version.restype = ctypes.c_char_p
+    version_str: str = gnu_get_libc_version()
+    # py2 / py3 compatibility:
+    if not isinstance(version_str, str):
+        version_str = version_str.decode("ascii")
+
+    return version_str
+
+
+def _glibc_version_string() -> str | None:
+    """Returns glibc version string, or None if not using glibc."""
+    return _glibc_version_string_confstr() or _glibc_version_string_ctypes()
+
+
+def _parse_glibc_version(version_str: str) -> _GLibCVersion:
+    """Parse glibc version.
+
+    We use a regexp instead of str.split because we want to discard any
+    random junk that might come after the minor version -- this might happen
+    in patched/forked versions of glibc (e.g. Linaro's version of glibc
+    uses version strings like "2.20-2014.11"). See gh-3588.
+    """
+    m = re.match(r"(?P<major>[0-9]+)\.(?P<minor>[0-9]+)", version_str)
+    if not m:
+        warnings.warn(
+            f"Expected glibc version with 2 components major.minor, got: {version_str}",
+            RuntimeWarning,
+            stacklevel=2,
+        )
+        return _GLibCVersion(-1, -1)
+    return _GLibCVersion(int(m.group("major")), int(m.group("minor")))
+
+
+@functools.lru_cache
+def _get_glibc_version() -> _GLibCVersion:
+    version_str = _glibc_version_string()
+    if version_str is None:
+        return _GLibCVersion(-1, -1)
+    return _parse_glibc_version(version_str)
+
+
+# From PEP 513, PEP 600
+def _is_compatible(arch: str, version: _GLibCVersion) -> bool:
+    sys_glibc = _get_glibc_version()
+    if sys_glibc < version:
+        return False
+    # Check for presence of _manylinux module.
+    try:
+        import _manylinux  # noqa: PLC0415
+    except ImportError:
+        return True
+    if hasattr(_manylinux, "manylinux_compatible"):
+        result = _manylinux.manylinux_compatible(version[0], version[1], arch)
+        if result is not None:
+            return bool(result)
+        return True
+    if version == _GLibCVersion(2, 5) and hasattr(_manylinux, "manylinux1_compatible"):
+        return bool(_manylinux.manylinux1_compatible)
+    if version == _GLibCVersion(2, 12) and hasattr(
+        _manylinux, "manylinux2010_compatible"
+    ):
+        return bool(_manylinux.manylinux2010_compatible)
+    if version == _GLibCVersion(2, 17) and hasattr(
+        _manylinux, "manylinux2014_compatible"
+    ):
+        return bool(_manylinux.manylinux2014_compatible)
+    return True
+
+
+_LEGACY_MANYLINUX_MAP: dict[_GLibCVersion, str] = {
+    # CentOS 7 w/ glibc 2.17 (PEP 599)
+    _GLibCVersion(2, 17): "manylinux2014",
+    # CentOS 6 w/ glibc 2.12 (PEP 571)
+    _GLibCVersion(2, 12): "manylinux2010",
+    # CentOS 5 w/ glibc 2.5 (PEP 513)
+    _GLibCVersion(2, 5): "manylinux1",
+}
+
+
+def platform_tags(archs: Sequence[str]) -> Iterator[str]:
+    """Generate manylinux tags compatible to the current platform.
+
+    :param archs: Sequence of compatible architectures.
+        The first one shall be the closest to the actual architecture and be the part of
+        platform tag after the ``linux_`` prefix, e.g. ``x86_64``.
+        The ``linux_`` prefix is assumed as a prerequisite for the current platform to
+        be manylinux-compatible.
+
+    :returns: An iterator of compatible manylinux tags.
+    """
+    if not _have_compatible_abi(sys.executable, archs):
+        return
+    # Oldest glibc to be supported regardless of architecture is (2, 17).
+    too_old_glibc2 = _GLibCVersion(2, 16)
+    if set(archs) & {"x86_64", "i686"}:
+        # On x86/i686 also oldest glibc to be supported is (2, 5).
+        too_old_glibc2 = _GLibCVersion(2, 4)
+    current_glibc = _GLibCVersion(*_get_glibc_version())
+    glibc_max_list = [current_glibc]
+    # We can assume compatibility across glibc major versions.
+    # https://sourceware.org/bugzilla/show_bug.cgi?id=24636
+    #
+    # Build a list of maximum glibc versions so that we can
+    # output the canonical list of all glibc from current_glibc
+    # down to too_old_glibc2, including all intermediary versions.
+    for glibc_major in range(current_glibc.major - 1, 1, -1):
+        glibc_minor = _LAST_GLIBC_MINOR[glibc_major]
+        glibc_max_list.append(_GLibCVersion(glibc_major, glibc_minor))
+    for arch in archs:
+        for glibc_max in glibc_max_list:
+            if glibc_max.major == too_old_glibc2.major:
+                min_minor = too_old_glibc2.minor
+            else:
+                # For other glibc major versions oldest supported is (x, 0).
+                min_minor = -1
+            for glibc_minor in range(glibc_max.minor, min_minor, -1):
+                glibc_version = _GLibCVersion(glibc_max.major, glibc_minor)
+                if _is_compatible(arch, glibc_version):
+                    yield "manylinux_{}_{}_{}".format(*glibc_version, arch)
+
+                    # Handle the legacy manylinux1, manylinux2010, manylinux2014 tags.
+                    if legacy_tag := _LEGACY_MANYLINUX_MAP.get(glibc_version):
+                        yield f"{legacy_tag}_{arch}"

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/lib/python3.10/site-packages/packaging/_musllinux.py

@@ -0,0 +1,85 @@
+"""PEP 656 support.
+
+This module implements logic to detect if the currently running Python is
+linked against musl, and what musl version is used.
+"""
+
+from __future__ import annotations
+
+import functools
+import re
+import subprocess
+import sys
+from typing import Iterator, NamedTuple, Sequence
+
+from ._elffile import ELFFile
+
+
+class _MuslVersion(NamedTuple):
+    major: int
+    minor: int
+
+
+def _parse_musl_version(output: str) -> _MuslVersion | None:
+    lines = [n for n in (n.strip() for n in output.splitlines()) if n]
+    if len(lines) < 2 or lines[0][:4] != "musl":
+        return None
+    m = re.match(r"Version (\d+)\.(\d+)", lines[1])
+    if not m:
+        return None
+    return _MuslVersion(major=int(m.group(1)), minor=int(m.group(2)))
+
+
+@functools.lru_cache
+def _get_musl_version(executable: str) -> _MuslVersion | None:
+    """Detect currently-running musl runtime version.
+
+    This is done by checking the specified executable's dynamic linking
+    information, and invoking the loader to parse its output for a version
+    string. If the loader is musl, the output would be something like::
+
+        musl libc (x86_64)
+        Version 1.2.2
+        Dynamic Program Loader
+    """
+    try:
+        with open(executable, "rb") as f:
+            ld = ELFFile(f).interpreter
+    except (OSError, TypeError, ValueError):
+        return None
+    if ld is None or "musl" not in ld:
+        return None
+    proc = subprocess.run([ld], check=False, stderr=subprocess.PIPE, text=True)
+    return _parse_musl_version(proc.stderr)
+
+
+def platform_tags(archs: Sequence[str]) -> Iterator[str]:
+    """Generate musllinux tags compatible to the current platform.
+
+    :param archs: Sequence of compatible architectures.
+        The first one shall be the closest to the actual architecture and be the part of
+        platform tag after the ``linux_`` prefix, e.g. ``x86_64``.
+        The ``linux_`` prefix is assumed as a prerequisite for the current platform to
+        be musllinux-compatible.
+
+    :returns: An iterator of compatible musllinux tags.
+    """
+    sys_musl = _get_musl_version(sys.executable)
+    if sys_musl is None:  # Python not dynamically linked against musl.
+        return
+    for arch in archs:
+        for minor in range(sys_musl.minor, -1, -1):
+            yield f"musllinux_{sys_musl.major}_{minor}_{arch}"
+
+
+if __name__ == "__main__":  # pragma: no cover
+    import sysconfig
+
+    plat = sysconfig.get_platform()
+    assert plat.startswith("linux-"), "not linux"
+
+    print("plat:", plat)
+    print("musl:", _get_musl_version(sys.executable))
+    print("tags:", end=" ")
+    for t in platform_tags(re.sub(r"[.-]", "_", plat.split("-", 1)[-1])):
+        print(t, end="\n      ")

tasks/computing_math/paper_reproduction_instance_1/base/software/.venv/lib/python3.10/site-packages/packaging/_parser.py

@@ -0,0 +1,393 @@
+"""Handwritten parser of dependency specifiers.
+
+The docstring for each __parse_* function contains EBNF-inspired grammar representing
+the implementation.
+"""
+
+from __future__ import annotations
+
+import ast
+from typing import List, Literal, NamedTuple, Sequence, Tuple, Union
+
+from ._tokenizer import DEFAULT_RULES, Tokenizer
+
+
+class Node:
+    __slots__ = ("value",)
+
+    def __init__(self, value: str) -> None:
+        self.value = value
+
+    def __str__(self) -> str:
+        return self.value
+
+    def __repr__(self) -> str:
+        return f"<{self.__class__.__name__}({self.value!r})>"
+
+    def serialize(self) -> str:
+        raise NotImplementedError
+
+    def __getstate__(self) -> str:
+        # Return just the value string for compactness and stability.
+        return self.value
+
+    def _restore_value(self, value: object) -> None:
+        if not isinstance(value, str):
+            raise TypeError(
+                f"Cannot restore {self.__class__.__name__} value from {value!r}"
+            )
+        self.value = value
+
+    def __setstate__(self, state: object) -> None:
+        if isinstance(state, str):
+            # New format (26.2+): just the value string.
+            self._restore_value(state)
+            return
+        if isinstance(state, tuple) and len(state) == 2:
+            # Old format (packaging <= 26.0, __slots__): (None, {slot: value}).
+            _, slot_dict = state
+            if isinstance(slot_dict, dict) and "value" in slot_dict:
+                self._restore_value(slot_dict["value"])
+                return
+        if isinstance(state, dict) and "value" in state:
+            # Old format (packaging <= 25.0, no __slots__): plain __dict__.
+            self._restore_value(state["value"])
+            return
+        raise TypeError(f"Cannot restore {self.__class__.__name__} from {state!r}")
+
+
+class Variable(Node):
+    __slots__ = ()
+
+    def serialize(self) -> str:
+        return str(self)
+
+
+class Value(Node):
+    __slots__ = ()
+
+    def serialize(self) -> str:
+        return f'"{self}"'
+
+
+class Op(Node):
+    __slots__ = ()
+
+    def serialize(self) -> str:
+        return str(self)
+
+
+MarkerLogical = Literal["and", "or"]
+MarkerVar = Union[Variable, Value]
+MarkerItem = Tuple[MarkerVar, Op, MarkerVar]
+MarkerAtom = Union[MarkerItem, Sequence["MarkerAtom"]]
+MarkerList = List[Union["MarkerList", MarkerAtom, MarkerLogical]]
+
+
+class ParsedRequirement(NamedTuple):
+    name: str
+    url: str
+    extras: list[str]
+    specifier: str
+    marker: MarkerList | None
+
+
+# --------------------------------------------------------------------------------------
+# Recursive descent parser for dependency specifier
+# --------------------------------------------------------------------------------------
+def parse_requirement(source: str) -> ParsedRequirement:
+    return _parse_requirement(Tokenizer(source, rules=DEFAULT_RULES))
+
+
+def _parse_requirement(tokenizer: Tokenizer) -> ParsedRequirement:
+    """
+    requirement = WS? IDENTIFIER WS? extras WS? requirement_details
+    """
+    tokenizer.consume("WS")
+
+    name_token = tokenizer.expect(
+        "IDENTIFIER", expected="package name at the start of dependency specifier"
+    )
+    name = name_token.text
+    tokenizer.consume("WS")
+
+    extras = _parse_extras(tokenizer)
+    tokenizer.consume("WS")
+
+    url, specifier, marker = _parse_requirement_details(tokenizer)
+    tokenizer.expect("END", expected="end of dependency specifier")
+
+    return ParsedRequirement(name, url, extras, specifier, marker)
+
+
+def _parse_requirement_details(
+    tokenizer: Tokenizer,
+) -> tuple[str, str, MarkerList | None]:
+    """
+    requirement_details = AT URL (WS requirement_marker?)?
+                        | specifier WS? (requirement_marker)?
+    """
+
+    specifier = ""
+    url = ""
+    marker = None
+
+    if tokenizer.check("AT"):
+        tokenizer.read()
+        tokenizer.consume("WS")
+
+        url_start = tokenizer.position
+        url = tokenizer.expect("URL", expected="URL after @").text
+        if tokenizer.check("END", peek=True):
+            return (url, specifier, marker)
+
+        tokenizer.expect("WS", expected="whitespace after URL")
+
+        # The input might end after whitespace.
+        if tokenizer.check("END", peek=True):
+            return (url, specifier, marker)
+
+        marker = _parse_requirement_marker(
+            tokenizer,
+            span_start=url_start,
+            expected="semicolon (after URL and whitespace)",
+        )
+    else:
+        specifier_start = tokenizer.position
+        specifier = _parse_specifier(tokenizer)
+        tokenizer.consume("WS")
+
+        if tokenizer.check("END", peek=True):
+            return (url, specifier, marker)
+
+        marker = _parse_requirement_marker(
+            tokenizer,
+            span_start=specifier_start,
+            expected=(
+                "comma (within version specifier), semicolon (after version specifier)"
+                if specifier
+                else "semicolon (after name with no version specifier)"
+            ),
+        )
+
+    return (url, specifier, marker)
+
+
+def _parse_requirement_marker(
+    tokenizer: Tokenizer, *, span_start: int, expected: str
+) -> MarkerList:
+    """
+    requirement_marker = SEMICOLON marker WS?
+    """
+
+    if not tokenizer.check("SEMICOLON"):
+        tokenizer.raise_syntax_error(
+            f"Expected {expected} or end",
+            span_start=span_start,
+            span_end=None,
+        )
+    tokenizer.read()
+
+    marker = _parse_marker(tokenizer)
+    tokenizer.consume("WS")
+
+    return marker
+
+
+def _parse_extras(tokenizer: Tokenizer) -> list[str]:
+    """
+    extras = (LEFT_BRACKET wsp* extras_list? wsp* RIGHT_BRACKET)?
+    """
+    if not tokenizer.check("LEFT_BRACKET", peek=True):
+        return []
+
+    with tokenizer.enclosing_tokens(
+        "LEFT_BRACKET",
+        "RIGHT_BRACKET",
+        around="extras",
+    ):
+        tokenizer.consume("WS")
+        extras = _parse_extras_list(tokenizer)
+        tokenizer.consume("WS")
+
+    return extras
+
+
+def _parse_extras_list(tokenizer: Tokenizer) -> list[str]:
+    """
+    extras_list = identifier (wsp* ',' wsp* identifier)*
+    """
+    extras: list[str] = []
+
+    if not tokenizer.check("IDENTIFIER"):
+        return extras
+
+    extras.append(tokenizer.read().text)
+
+    while True:
+        tokenizer.consume("WS")
+        if tokenizer.check("IDENTIFIER", peek=True):
+            tokenizer.raise_syntax_error("Expected comma between extra names")
+        elif not tokenizer.check("COMMA"):
+            break
+
+        tokenizer.read()
+        tokenizer.consume("WS")
+
+        extra_token = tokenizer.expect("IDENTIFIER", expected="extra name after comma")
+        extras.append(extra_token.text)
+
+    return extras
+
+
+def _parse_specifier(tokenizer: Tokenizer) -> str:
+    """
+    specifier = LEFT_PARENTHESIS WS? version_many WS? RIGHT_PARENTHESIS
+              | WS? version_many WS?
+    """
+    with tokenizer.enclosing_tokens(
+        "LEFT_PARENTHESIS",
+        "RIGHT_PARENTHESIS",
+        around="version specifier",
+    ):
+        tokenizer.consume("WS")
+        parsed_specifiers = _parse_version_many(tokenizer)
+        tokenizer.consume("WS")
+
+    return parsed_specifiers
+
+
+def _parse_version_many(tokenizer: Tokenizer) -> str:
+    """
+    version_many = (SPECIFIER (WS? COMMA WS? SPECIFIER)*)?
+    """
+    parsed_specifiers = ""
+    while tokenizer.check("SPECIFIER"):
+        span_start = tokenizer.position
+        parsed_specifiers += tokenizer.read().text
+        if tokenizer.check("VERSION_PREFIX_TRAIL", peek=True):
+            tokenizer.raise_syntax_error(
+                ".* suffix can only be used with `==` or `!=` operators",
+                span_start=span_start,
+                span_end=tokenizer.position + 1,
+            )
+        if tokenizer.check("VERSION_LOCAL_LABEL_TRAIL", peek=True):
+            tokenizer.raise_syntax_error(
+                "Local version label can only be used with `==` or `!=` operators",
+                span_start=span_start,
+                span_end=tokenizer.position,
+            )
+        tokenizer.consume("WS")
+        if not tokenizer.check("COMMA"):
+            break
+        parsed_specifiers += tokenizer.read().text
+        tokenizer.consume("WS")
+
+    return parsed_specifiers
+
+
+# --------------------------------------------------------------------------------------
+# Recursive descent parser for marker expression
+# --------------------------------------------------------------------------------------
+def parse_marker(source: str) -> MarkerList:
+    return _parse_full_marker(Tokenizer(source, rules=DEFAULT_RULES))
+
+
+def _parse_full_marker(tokenizer: Tokenizer) -> MarkerList:
+    retval = _parse_marker(tokenizer)
+    tokenizer.expect("END", expected="end of marker expression")
+    return retval
+
+
+def _parse_marker(tokenizer: Tokenizer) -> MarkerList:
+    """
+    marker = marker_atom (BOOLOP marker_atom)+
+    """
+    expression = [_parse_marker_atom(tokenizer)]
+    while tokenizer.check("BOOLOP"):
+        token = tokenizer.read()
+        expr_right = _parse_marker_atom(tokenizer)
+        expression.extend((token.text, expr_right))
+    return expression
+
+
+def _parse_marker_atom(tokenizer: Tokenizer) -> MarkerAtom:
+    """
+    marker_atom = WS? LEFT_PARENTHESIS WS? marker WS? RIGHT_PARENTHESIS WS?
+                | WS? marker_item WS?
+    """
+
+    tokenizer.consume("WS")
+    if tokenizer.check("LEFT_PARENTHESIS", peek=True):
+        with tokenizer.enclosing_tokens(
+            "LEFT_PARENTHESIS",
+            "RIGHT_PARENTHESIS",
+            around="marker expression",
+        ):
+            tokenizer.consume("WS")
+            marker: MarkerAtom = _parse_marker(tokenizer)
+            tokenizer.consume("WS")
+    else:
+        marker = _parse_marker_item(tokenizer)
+    tokenizer.consume("WS")
+    return marker
+
+
+def _parse_marker_item(tokenizer: Tokenizer) -> MarkerItem:
+    """
+    marker_item = WS? marker_var WS? marker_op WS? marker_var WS?
+    """
+    tokenizer.consume("WS")
+    marker_var_left = _parse_marker_var(tokenizer)
+    tokenizer.consume("WS")
+    marker_op = _parse_marker_op(tokenizer)
+    tokenizer.consume("WS")
+    marker_var_right = _parse_marker_var(tokenizer)
+    tokenizer.consume("WS")
+    return (marker_var_left, marker_op, marker_var_right)
+
+
+def _parse_marker_var(tokenizer: Tokenizer) -> MarkerVar:  # noqa: RET503
+    """
+    marker_var = VARIABLE | QUOTED_STRING
+    """
+    if tokenizer.check("VARIABLE"):
+        return process_env_var(tokenizer.read().text.replace(".", "_"))
+    elif tokenizer.check("QUOTED_STRING"):
+        return process_python_str(tokenizer.read().text)
+    else:
+        tokenizer.raise_syntax_error(
+            message="Expected a marker variable or quoted string"
+        )
+
+
+def process_env_var(env_var: str) -> Variable:
+    if env_var in ("platform_python_implementation", "python_implementation"):
+        return Variable("platform_python_implementation")
+    else:
+        return Variable(env_var)
+
+
+def process_python_str(python_str: str) -> Value:
+    value = ast.literal_eval(python_str)
+    return Value(str(value))
+
+
+def _parse_marker_op(tokenizer: Tokenizer) -> Op:
+    """
+    marker_op = IN | NOT IN | OP
+    """
+    if tokenizer.check("IN"):
+        tokenizer.read()
+        return Op("in")
+    elif tokenizer.check("NOT"):
+        tokenizer.read()
+        tokenizer.expect("WS", expected="whitespace after 'not'")
+        tokenizer.expect("IN", expected="'in' after 'not'")
+        return Op("not in")
+    elif tokenizer.check("OP"):
+        return Op(tokenizer.read().text)
+    else:
+        return tokenizer.raise_syntax_error(
+            "Expected marker operator, one of <=, <, !=, ==, >=, >, ~=, ===, in, not in"
+        )