# STOCKHOLM 1.0
#=GF ID snoR86
#=GF AC RF00303
#=GF DE Small nucleolar RNA snoR86
#=GF AU Moxon SJ; 0000-0003-4644-1816
#=GF GA 40.0
#=GF NC 39.7
#=GF TC 40.0
#=GF SE Moxon SJ, INFERNAL
#=GF SS Predicted; PFOLD; Moxon SJ
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 29.67 -Z 2958934 CM SEQDB
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Arabidopsis_thaliana300124;
#=GF DR snoopy; Arabidopsis_thaliana300207;
#=GF RN [1]
#=GF RM 12007400
#=GF RT Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse
#=GF RT cellular functions.
#=GF RA Kiss T
#=GF RL Cell 2002;109:145-148.
#=GF RN [2]
#=GF RM 12477388
#=GF RT Experimental RNomics: identification of 140 candidates for small
#=GF RT non-messenger RNAs in the plant Arabidopsis thaliana.
#=GF RA Marker C, Zemann A, Terhorst T, Kiefmann M, Kastenmayer JP, Green P,
#=GF RA Bachellerie JP, Brosius J, Huttenhofer A
#=GF RL Curr Biol 2002;12:2002-2013.
#=GF CC snoR86 is a member of the H/ACA class of small nucleolar RNAs (snoRNAs)
#=GF CC which act as guides in the the modification of uridines to pseudouridines
#=GF CC [1].
#=GF WK Small_nucleolar_RNA_snoR86
#=GF SQ 11

AL138659.1/77819-77696       GAGCAAUGACGUCAAAAU---AA----AAAUGGC-GUAAGUUGCCUUGAAGGUUGGCAACAACAAAUA--------GCGAUUCUCCGUGCCUAUCAAGUUUUCUAAUCUUGAUUGUU----GGCCUCGAACAAGUCGCUACAUU
AJ505659.1/1-124             GAGCAAUGACGUCAAAAU---AA----AAAUGGC-GUAAGUUGCCUUGAAGGUUGGCAACAACAAAUA--------GCGAUUCUCCGUGCCUAUCAAGUUUUCUAAUCUUGAUUGUU----GGCCUCGAACAAGUCGCUACAUU
AARH01007754.1/2159-2040     GAGCAAGGGUGUC--------GA----AAAUGGC-ACAACUUGCAUUGAAGGUUGGCAA-UACUAAUA--------GCAAUUCUCCGUGCCUAUCAAAUCUUGAUUUCAUUUUGAUU--AUGGCCUCGAACAAGUUGCUACAUU
AASG02009944.1/1753-1868     GAGCAAAUGCGUC--------GA----AAAUGGC-GAAAUUUGCAUUGAAGGUUGGCAAUAUCAA-UA--------GCAAUUCUCCGUGCCUAUUAAAUCGAUCAUUUUGA--UUAU----GGCCUCGAACAAGUUGCAACAGU
AACV01024246.1/8981-8858     GAGCAAAGGGGCC--AGA---UG----CAGUGGC-UAUCUUUGCAUUGAAGGUUGGCGACAACGAACAAAC-----GCAGUUCUCCGUGCCGCUCAGAUUUUCUCUGUUUUGUG-AC----GGCCUCGAACAAGCUGCUACAUC
AARH01010162.1/241821-241954 GAGCAAGGACGUCAAGAA---AAAAG-AGAUGGC-GUGAUUUGCAUUGAAGGUUGGCUAUAUCAAUGAUAAAAUUGGCGAUUCUCCGUGCCUGUCAAAUCUGUUCAUUUUGAUC-AU----GGCCUCGAACAAGUCGCUACAAA
AL731740.4/7530-7650         GAGCAAAGGGGCC--UGA---UA----AAGUGGC-GAUCUUUGGAUUGAAGGUUGGCGACAACGA-UU--------GCAGUUCUCCGUGCCGCUCAGAUUUUCCUCUCUUUUGUGAC----GGCCUCGAACAAGCUGCUACAUC
AC007767.3/47035-47162       GAGCAAGGGCGUC-UAGU---UU----AAAUGAC-GUGAGUUGCCUUGAAGGUUGGCGAUAACAAGUUUU------GCGAUUCUCCGUGCCUAUCAAAUUUUGUUUUUCGUAUUGAU-AAUGGCCUCGAACAAGUCGCUACAUU
AASG02009944.1/2138-2259     GAGCAAGAGUGUC--------UA----AAAUGACUACAACUUGCAUUGAAGGU-GGCCA-UAUCAAUA--------GCAAUUCUCCGUGCCUAUCAAAUCUCUUAAUUUCAUUUUGAUUAUGGCCUCGAACAAGUUGCUACAUU
AM448130.2/819-690           GAGCAAAGGCGUCGAAUA---AAAGAGAAAUGAC-GCAAUUUGCCUUGAAGGUUGGCGAUAAGGAAAAAUG-----GCGAUUCUCCGUGCCUGUCAAUCAUUUUUAUUUUGAUC-AU----GGCCUCGAACAAGUCGCUACAUU
AC189297.2/132599-132725     GAGCAAUGACGUCAAAAUAUAAA----AAAUGGC-GUGAGUUGCCUUGAAGGUUGGCAAUAACAAUAA--------GCGAUUCUCCGUGCCUAUCAAGUUUUCUUUAUACUGAUUGC----GGCCUCGAACAAGUCGCUACAUU
#=GC SS_cons                 ::::::::<<<<<.____...__....____>>>.>>:::<<<<<_________>>>>>:::::::::........<<<<<<------<<<__________________________....>>>-------->>>>>>::::::
#=GC RF                      GAGCAAaGgcGcC.aaaa...aA....AAAUGgC.gcaAuUuGCcUUGAAGGUUgGCaAuAAcaAauA........GCgauUCUCCGUGCCuaUCAAaUuUuuuuuUuuuuauuuau....GGCCUCGAACAAgucGCUACAUu
//