# STOCKHOLM 1.0 #=GF ID Bacteria_large_SRP #=GF AC RF01854 #=GF DE Bacterial large signal recognition particle RNA #=GF AU Gardner PP; 0000-0002-7808-1213 #=GF GA 60.0 #=GF NC 59.9 #=GF TC 60.0 #=GF PI SRP_bact_l; SRP_bact #=GF SE Published; PMID:19838050 #=GF SS Published; PMID:19838050 #=GF TP Gene; #=GF BM cmbuild -F CM SEED #=GF CB cmcalibrate --mpi CM #=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 28.00 -Z 2958934 CM SEQDB #=GF CL CL00003 #=GF DR URL; http://rnp.uthscsa.edu/rnp/SRPDB/SRPDB.html; #=GF DR SO; 0000590; SRP_RNA; #=GF DR GO; 0006617; SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition; #=GF DR GO; 0048501; signal recognition particle, plasma membrane targeting; #=GF RN [1] #=GF RM 12520023 #=GF RT SRPDB: Signal Recognition Particle Database. #=GF RA Rosenblad MA, Gorodkin J, Knudsen B, Zwieb C, Samuelsson T #=GF RL Nucleic Acids Res 2003;31:363-364. #=GF RN [2] #=GF RM 12140321 #=GF RT Prediction of signal recognition particle RNA genes. #=GF RA Regalia M, Rosenblad MA, Samuelsson T #=GF RL Nucleic Acids Res 2002;30:3368-3377. #=GF RN [3] #=GF RM 19838050 #=GF RT Kinship in the SRP RNA family. #=GF RA Rosenblad MA, Larsen N, Samuelsson T, Zwieb C #=GF RL RNA Biol. 2009;6:508-516. #=GF CC The signal recognition particle (SRP) is a universally conserved #=GF CC ribonucleoprotein involved in the co-translational targeting of proteins #=GF CC to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA #=GF CC (RFAM:RF00017) and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal #=GF CC SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 #=GF CC proteins. In most bacteria, the SRP consists of a 4.5S RNA and the Ffh #=GF CC protein (a homologue of the eukaryotic SRP54 protein). Some Gram-positive #=GF CC bacteria (e.g. Bacillus subtilis) have a longer eukaryote-like SRP RNA #=GF CC that includes an Alu domain [2]. The Alu domain of the longer SRP RNAs is #=GF CC not included in this model and therefore the reported bounds of some #=GF CC members are incorrect. The Signal Recognition Particle Database (SRPDB) #=GF CC [1] provides compilations of SRP components, with phylogenetic data and #=GF CC structural illustrations. #=GF WK Signal_recognition_particle_RNA #=GF SQ 92 CP000764.1/25247-25511 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUA--CUCGCAAUCCGCUCU-AGCGAG-GCCGA---AUCCCU-UCUC-GAGGUUAU-GUUACU-GUAAGG-CCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUACG---CAACGAGA--CCCC-GUGAACCUUGUCAGGUCCGGAAGGAAGCAGC AE015929.1/2386853-2386584 CCGUGCUAGGU-GGGGAGGUAGCGGUUCCCUGUA--CUCGAAAUCCGCUUUAUGCGAG-ACUUA---AUUCCUUUGUU-GAGGGCGU-AUUUUU-GUGAAG-UCUGCC-CGAAGCACGU-AGU---GUUUGAAGAUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC CP000730.1/508055-508324 CCGUGCUAGGU-GGGGAGGUAGCGGUUCCCUGUA--CUCGAAAUCCGCUUUAUGCGAG-GCUUA---AUUCCUUUGUU-GAGGCCGU-AUUUUU-GCGAAG-UCUGCC-CAAAGCACGU-AGU---GUUUGAAGAUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC CP000485.1/25122-25386 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUAUA--CUCGCAAUCCGCUCU-----AGCGAGGCCGAAUCCCUUCUCG--AGGUUAU-GUUGCU-GUAAGG-CCUGCCUUAAGUA--AGUGGU---GUU-GA-CGUUUGGGU---CCUGCG---CAACGGGA--CCCC-GUGAACCUUGUCAGGUCCGGAAGGAAGCAGC CP000029.1/101125-101225 --------------------------------------------------------------------------------------------------------------------------------------AUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC X06802.1/5-269 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUA--CCUGCAAUCCGCUCU-AGCAGG-GCCGA---AUCCCU-UCUC-GAGGUUCG-UUUACU-UUAAGG-CCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUGCG---CAAUGGGA--AUUC-AUGAACCAUGUCAGGUCCGGAAGGAAGCAGC D26185.1/90020-90284 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUA--CCUGCAAUCCGCUCU-AGCAGG-GCCGA---AUCCCU-UCUC-GAGGUUCG-UUUACU-UUAAGG-CCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUGCG---CAAUGGGA--AUUC-AUGAACCAUGUCAGGUCCGGAAGGAAGCAGC CP000728.1/33073-33316 CCGUGCUAGAU-GGGGAGUUAGCGGUGCCCUGUAA-CCUGCAAUCCGCUAC-AGCAGG-GUUGA---AUUCUUCGCCU--AGGCUUU--AACU-UGUGGGG-UCUG--GCCUGUAAAAGUGGU---GUU-GA-UAAUUGGGU---CCCACG---CAACGAAAA--UUC-AUGAACUCCGUCAGAUCCGGAAGGAAGCAGC AE001437.1/136141-136243 -------------------------------------------------------------------------------------------------------------------------------------GAAUUGGGU---CCCACG---CAACGGAAA--UUC-AUGAACUCCGUCAGGUCCGGAAGGAAGCAGC CP000736.1/536869-536969 --------------------------------------------------------------------------------------------------------------------------------------AUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC BX571857.1/485579-485679 --------------------------------------------------------------------------------------------------------------------------------------AUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC BA000017.4/525852-525952 --------------------------------------------------------------------------------------------------------------------------------------AUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC D11420.1/5-270 CCGUGCUAAGCAGGCGAGGUAGCGGUGCCCCAUA--CCCGCAAUCCGCUCU-AGGAGG-GCCGA---AUCCCU-UCUC-GAGGUUCG-UUUACU-GUAAGG-UCUGCC-UUAAGUAAGU-GGC---GUU-GA-CGUCUGGGU---CCUGCG---CAAUGGGA--AUUC-AUGAACCAUGUCAGGUCCGGAAGGAAGCAGC D12926.1/388-490 -------------------------------------------------------------------------------------------------------------------------------------GGAGCGGGU---CCUGUG---CAACGCG---AACCCAUGAACCUGGUCAGGUCCGGAAGGAAGCAGC AE016879.1/25115-25379 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUAUA--CUCGCAAUCCGCUCU-AGCGAG-GCCGA---AUCCCU-UCUC-GAGGUUAU-GUUGCU-GUAAGG-CCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUGCG---CAACGGGA--CCCC-GUGAACCUUGUCAGGUCCGGAAGGAAGCAGC U15684.1/154-183 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCAUGUCAGGUCCGGAAGGAAGCAGC AL596173.1/263987-263721 UCGUGCUAGAC-GGGGAGGUAGCGGCGCCCUGUAA-CCCGCAAUCCGCUCU-AGCGGG-GUUGA---AUUCCU-CAUUUGAGGCAUC-GUAAUU-GUUUGGUCU-GCC-CUUGACAAGU-GGU---GUU-GA-AGGUUGGGU---CUUGCG---CAAUGGGAA--CCU-GUGAACCAUGUCAGGUCCGGAAGGAAGCAGC AF269831.1/1333-1433 --------------------------------------------------------------------------------------------------------------------------------------AUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC BA000018.3/501420-501689 CCGUGCUAGGU-GGGGAGGUAGCGGUUCCCUGUA--CUCGAAAUCCGCUUUAUGCGAG-GCUUA---AUUCCUUUGUU-GAGGCCGU-AUUUUU-GCGAAG-UCUGCC-CAAAGCACGU-AGU---GUUUGAAGAUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC CP000716.1/1385812-1385778 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACCGGGUCAGGUCCGGAAGGAAGCAGC CP000726.1/37731-37974 CCGUGCUAGAU-GGGGAGUUAGCGGUGCCCUGUAA-CCUGCAAUCCGCUAC-AGCAGG-GUUGA---AUUCUUCGCCU--AGACUUU--AACU-UGUGGGG-UCUG--GCCUGUAAAAGUGGU---GUU-GA-UAAUUGGGU---CCCACG---CAACGAAAA--UUC-AUGAACUCCGUCAGAUCCGGAAGGAAGCAGC CP000448.1/35764-35828 CCGUGCUAGAU-GGGGAGGUAGCGGUGCCCUGUA-ACCUGCAACCCGCUAU-AGCAGG-GUCGA---AUUCC-------------------------------------------------------------------------------------------------------------------------------- AF269814.1/2629-2729 --------------------------------------------------------------------------------------------------------------------------------------AUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC X52144.1/697-961 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUA--CCUGCAAUCCGCUCU-AGCAGG-GCCGA---AUCCCU-UCUC-GAGGUUCG-UUUACU-UUAAGG-CCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUGCG---CAAUGGGA--AUUC-AUGAACCAUGUCAGGUCCGGAAGGAAGCAGC CP001186.1/24962-25226 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUAUA--CUCGCAAUCCGCUCU-AGCGAG-GCCGA---AUCCCC-UCUC-GAGGUUAU-GUUGCU-GUAAGG-UCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUGCG---CAACGGGA--CCCC-GUGAACCUUGUCAGGUCCGGAAGGAAGCAGC CP000227.1/25236-25338 -------------------------------------------------------------------------------------------------------------------------------------CGUUUGGGU---CCUGCG---CAACGGGA--CCCC-GUGAACCUUGUCAGGUCCGGAAGGAAGCAGC CP001175.1/2823285-2823387 -------------------------------------------------------------------------------------------------------------------------------------AGGUUGGGU---CUUGCG---CAAUGGGA--ACCU-GUGAACCAUGUCAGGUCCGGAAGGAAGCAGC AE017225.1/25229-25331 -------------------------------------------------------------------------------------------------------------------------------------CGUUUGGGU---CCUGCG---CAACGGGA--CCCC-GUGAACCUUGUCAGGUCCGGAAGGAAGCAGC CP000246.1/54302-54566 CCGUGCUAGAU-GGGGAGUUAGCGGUGCCCUGUAA-CCUGCAAUCCGCUAC-AGCAGG-AUCGA---AGUCCUCAUA--GAGGCUCU--AACUU-GUGGAG-UCUG--CCCUAUGUAAGUGGU---GUU-GA-GAGUUGGGC---CCCACG---CAAUGGAAA--CCU-GUGAACCUCGUCAGGUCCGGAAGGAAGCAGC CP000002.3/30682-30947 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUAC-UC-GCAAUCCGCUCG-AGCGAG-GCCGA---AUCCCUUUCUC-GAGGUUCG--UUUACUUUAAGG-UCUGCC-UUAAGCAAGU-GGU---GUU-GA-CGCUUGGGU---CCUGCG---CAAUGGGA--AUCC-AUGAACCAUGUCAGGUCCGGAAGGAAGCAGC ACHE01000060.1/4624-4355 CCGUGCUAGGU-GGGGAGGUAGCGGUUCCCUGUA--CUCGAAAUCCGCUUUAUGCGAG-ACUUA---AUUCCUUUGUU-GAGGACGU-AUUUUU-GUGAAG-UCUGCC-CGAAGCACGU-AGU---GUUUGAAGAUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC D11419.1/5-270 CCGUGCUAAGCGGGGGAGGUAGCGGUGCCCUGUA--CUCGCAAUCCGCUCU-AGCGAG-GCUGA---AUUCCU-UUCU-GAGGCUGG-UAUCCU-GUAGGG-UCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUCCGGGU---CCUGCG---CAAUGGGA--AUCC-AUGAACCAUGUCAGGUCCGGAAGGAAGCAGC CP000560.1/27594-27646 ----------------------------------------------------------------------------------------------------------------------------------------------------------------GA--AUUC-AUGAACCAUGUCAGGUCCGGAAGGAAGCAGC AM180355.1/20131-20368 --GUACUAGAU-GGGGAGGUAGCGGUGCCCUGUA-ACCUGCAAUCCGCUAU-AGCAGG-AUUGA---AUUCCAUCUAA--AGGCUUA-UUUUCU-GUAGG--GCCG--CCCUAAAUAAGUGGU---GUU-GA-UGCUUAGGU---CCUGCG---CAAUGAAAG--CUC-AUGAACCCCGUCAGAUCCGGAAGGAAGCAGC AF368293.1/5-274 CCGUGCUAGGU-GGGGAGGUAGCGGUUCCCUGUA--CUCGAAAUCCGCUUUAUGCGAG-GCUUA---AUUCCUUUGUU-GAGGCCGU-AUUUUU-GCGAAG-UCUGCC-CAAAGCACGU-AGU---GUUUGAAGAUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC D11417.1/5-269 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUA--CCUGCAAUCCGCUCU-AGCAGG-GCCGA---AUCCCU-UCUC-GAGGUUCG-UUUACU-UUAAGG-UCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUGCG---CAAUGGGA--AUUC-AUGAACCAUGUCAGGUCCGGAAGGAAGCAGC CP001215.1/24988-25252 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUAUA--CUCGCAAUCCGCUCU-AGCGAG-GCCGA---AUCCCU-UCUC-GAGGUUAU-GUUGCU-GUAAGG-CCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUGCG---CAACGGG---ACCCCGUGAACCUUGUCAGGUCCGGAAGGAAGCAGC CP000255.1/508278-508378 --------------------------------------------------------------------------------------------------------------------------------------AUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC AP006627.1/47077-47179 -------------------------------------------------------------------------------------------------------------------------------------CGUUUGGGU---UCUGCG---CAACGGA---AACCCAUGAACCCUGUCAGGUCCGGAAGGAAGCAGC CP001185.1/1535075-1535038 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------GUGAACCGGGUCAGGUCCGGAAGGAAGCAGC D13041.1/5-269 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUA--CCUGCAAUCCGCUCU-AGCAGG-GCCGA---AUCCCU-UCUC-GAGGUUCG-UUUACU-UUAAGG-CCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUGCG---CAAUGGGA--AUUC-AUGAACCAUGUCAGGUCCGGAAGGAAGCAGC AE017194.1/25229-25331 -------------------------------------------------------------------------------------------------------------------------------------CGUUUGGGU---CCUGCG---CAACGGGA--CCCC-GUGAACCUUGUCAGGUCCGGAAGGAAGCAGC X12642.1/292-556 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUA--CCUGCAAUCCGCUCU-AGCAGG-GCCGA---AUCCCU-UCUC-GAGGUUCG-UUUACU-UUAAGG-CCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUGCG---CAAUGGGA--AUUC-AUGAACCAUGUCAGGUCCGGAAGGAAGCAGC ACFR01000004.1/173539-173639 --------------------------------------------------------------------------------------------------------------------------------------AUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC D11412.1/5-269 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUAUA--CUCGCAAUCCGCUCU-AGC-AG-GCCGA---AUCCCC-UCUC-GAGGUUAU-GUUGCU-GUAAGG-UCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUGCG---CAACGGGA--CCCC-GUGAACCUUGUCAGGUCCGGAAGGAAGCAGC D11416.1/5-269 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUA--CCUGCAAUCCGCUCU-AGCAGG-GCCGA---AUCCCU-UCUC-GAGGUUCG-UUUACU-UUAAGG-CCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUGCG---CAAUGGGA--AUUC-AUGAACCAUGUCAGGUCCGGAAGGAAGCAGC AE015927.1/24077-23975 -------------------------------------------------------------------------------------------------------------------------------------GAAUUGGGU---CCCACG---CAACGGAAA--CUC-AUGAAACCCGUCAGGUCCGGAAGGAAGCAGC AE017333.1/30486-30751 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUAC-UC-GCAAUCCGCUCG-AGCGAG-GCCGA---AUCCCUUUCUC-GAGGUUCG--UUUACUUUAAGG-UCUGCC-UUAAGCAAGU-GGU---GUU-GA-CGCUUGGGU---CCUGCG---CAAUGGGA--AUCC-AUGAACCAUGUCAGGUCCGGAAGGAAGCAGC AM412317.1/37716-37959 CCGUGCUAGAU-GGGGAGUUAGCGGUGCCCUGUAA-CCUGCAAUCCGCUAC-AGCAGG-GUUGA---AUUCUUCGCCU--AGACUUU--AACU-UGUGGGG-UCUG--GCCUGUAAAAGUGGU---GUU-GA-UAAUUGGGU---CCCACG---CAACGAAAA--UUC-AUGAACUCCGUCAGAUCCGGAAGGAAGCAGC D11415.1/5-268 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUA--CUCGCAAUCCGCUCU-AGC-AG-GCCGA---AUCCCU-UCUC-GAGGUUCG-UUUACU-UCAAGG-UCUGCC-UUAAAUAAGU-GGU---GUU-GA-CGUCUGGGU---CCUGCG---CAAUGGGA--AUUC-AUGAACCAUGUCAGGUCCGGAAGGAAGCAGC AL591984.1/65413-65311 -------------------------------------------------------------------------------------------------------------------------------------AGGUUGGGU---CUUGCG---CAAUGGGA--ACCU-GUGAACCAUGUCAGGUCCGGAAGGAAGCAGC CP000382.1/2507879-2507649 -CGUGCUAGAC-GGGAAGUUAGCGGUGUCCUGU--ACCUGCAAUCCGCUAU-AGCAGG-GUUGA---AUUCCUCGUUG--AGGCUUU-AAAAUG-GGAGG--UCUG--GCUUAUAUAAGUGGC---GUU-GA-GAAUUGGGC---CCUACG---CAAUAGGAA--CUC-AUGAACCCCGUCAGGUCCGGAAGGAAGCAGC CP000727.1/37731-37974 CCGUGCUAGAU-GGGGAGUUAGCGGUGCCCUGUAA-CCUGCAAUCCGCUAC-AGCAGG-GUUGA---AUUCUUCGCCU--AGACUUU--AACU-UGUGGGG-UCUG--GCCUGUAAAAGUGGU---GUU-GA-UAAUUGGGU---CCCACG---CAACGAAAA--UUC-AUGAACUCCGUCAGAUCCGGAAGGAAGCAGC BA000043.1/27043-27145 -------------------------------------------------------------------------------------------------------------------------------------CGUCUGGGU---CCCGCG---CAAUGGG---AUUCCGUGAACCCUGUCAGGUCCGGAAGGAAGCAGC BA000004.3/46485-46751 CCGUGCUAGGU-GGGGAGGUAGCGGUGCCCUGUCA-CUCGCAAUCCGCUAU-AGCGAG-GCUGA---AUCCCU-UCUA-GAGGUUUU--GUCACCGUAGGG-UCUGCC-CUAAGUAAGU-GGU---GUU-GA-CGCUUGGGU---UCUACG---CAACGAAA--ACCC-ACGAACCCUGUCAGGUCCGGAAGGAAGCAGC CP000702.1/1631640-1631756 --------------------------------------------------------------------------------------------------------------------------------GGGGGCGAUGAAGA-CCGGGUCCCACGCAACGGA-ACCCU-GUGAACCUGGUCAGGCCCGGGAGGGAGCAGC CP000253.1/444208-444308 --------------------------------------------------------------------------------------------------------------------------------------AUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC CP000046.1/524416-524685 CCGUGCUAGGU-GGGGAGGUAGCGGUUCCCUGUA--CUCGAAAUCCGCUUUAUGCGAG-GCUUA---AUUCCUUUGUU-GAGGCCGU-AUUUUU-GCGAAG-UCUGCC-CAAAGCACGU-AGU---GUUUGAAGAUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC CP000001.1/25120-25384 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUAUA--CUCGCAAUCCGCUCU-AGCGAG-GCCGA---AUCCCU-UCUC-GAGGUUAU-GUUGCU-GUAAGG-CCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUGCG---CAACGGGA--CCCC-GUGAACCUUGUCAGGUCCGGAAGGAAGCAGC CP001283.1/25232-25334 -------------------------------------------------------------------------------------------------------------------------------------CGUUUGGGU---CCUGCG---CAACGGG---ACCCCGUGAACCUUGUCAGGUCCGGAAGGAAGCAGC AE017262.2/2736493-2736285 --------------------------------------------------------------GA---AUUCCU-CAUUUGAGGCAUC-GUAAUU-GUUUGGUCU-GCC-CUUGACAAGU-GGU---GUU-GA-AGGUUGGGU---CUUGCG---CAAUGGGA--ACCU-GUGAACCAUGUCAGGUCCGGAAGGAAGCAGC D11421.1/5-270 CCGUGCUAAGCGGGGGAGGUAGCGGUGCCCUGUA--CCUGCAAUCCGCUCU-AGCAGG-GCCGA---AUCCCU-UCUC-GAGGUUCG-UUUACU-UUAAGG-CCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUGCG---CAAUGGGA--AUUC-AUGAACCAUGUCAGGUCCGGAAGGAAGCAGC CP001598.1/25015-25279 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUAUA--CUCGCAAUCCGCUCU-AGCGAG-GCCGA---AUCCCU-UCUC-GAGGUUAU-GUUGCU-GUAAGG-CCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUGCG---CAACGGGA--CCCC-GUGAACCUUGUCAGGUCCGGAAGGAAGCAGC D14472.1/475-743 CCGUGCUAGAC-GGGGAGGUUGCGGUGCCCUGUAA-CCUGCAAUCCGCAAUAGCCAGG-GUGUG-A-AUUCCU-AUCC-UAGGUUUU--CUUAU-GUGAGG--CUGCCGUUGAUGGCGGCGGU---GUU-GA-GGAGCGGGU---CCUGUG---CAACGCGA--ACCC-AUGAACCUGGUCAGGUCCGGAAGGAAGCAGC CP000703.1/536798-536898 --------------------------------------------------------------------------------------------------------------------------------------AUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC AP009324.1/527299-527399 --------------------------------------------------------------------------------------------------------------------------------------AUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC D11422.1/5-266 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUA--CUCGCAAUCCGCUAU-AGCAGG--CUGA---AUCCCU-UCUA-GAGGUUUU--GUCACCGUAGGC-UCUGCC-CUAAGUAAGU-GGU---GUU-GA-CG-UUGGGU---UCUACG---CAACGAAA--ACCC-ACGAACCCUGUCAGGUCCGGAAGGAAGCAGC CP000141.1/2376482-2376447 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAACCGUGUCAGGUCCGGAAGGAAGCAGC D49784.1/286-550 CCGUGCUAGAU-GGGGAGUUAGCGGUGCCCUGUAA-CCUGCAAUCCGCUAC-AGCAGG-AUCGA---AGUCCUCAUA--GAGGCUCU--AACUU-GUGGAG-UCUG--CCCUAUGUAAGUGGU---GUU-GA-GAGUUGGGC---CCCACG---CAAUGGAAA--CCU-GUGAACCUCGUCAGGUCCGGAAGGAAGCAGC AL009126.3/26420-26684 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUA--CCUGCAAUCCGCUCU-AGCAGG-GCCGA---AUCCCU-UCUC-GAGGUUCG-UUUACU-UUAAGG-CCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUGCG---CAAUGGGA--AUUC-AUGAACCAUGUCAGGUCCGGAAGGAAGCAGC AP006716.1/2548377-2548277 --------------------------------------------------------------------------------------------------------------------------------------AUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAAUCAUGUCAGGUCCUGACGGAAGCAGC D11413.1/5-264 CCGUGCUAAGCGGGGGAGGUAGCGGUGCCCUAUA--CUCGCAAUCCGCUCU-AGC-AG-GCCGA---AUCCCC-UCUC-GAGGUUAU-GUUGCU-GUAAGG-UCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUGCG---CAACGGGA---CCC-GUGAACCUUGUCAGGUCCGGAAGGAAGCAGC D11414.1/5-268 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUA--CUCGCAAUCCGCUCU-AGC-AG-GCCGA---AUUCCU-UCUU-GAGGUUAG-CUCAUC-UUAGGG-CCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUACG---CAAUGGGA--AUCU-GUGAACCCUGUCAGGUCCGGAAGGAAGCAGC X14796.1/291-555 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUA--CCUGCAAUCCGCUCU-AGCAGG-GCCGA---AUCCCU-UCUC-GAGGUUCG-UUUACU-UUAAGG-CCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUGCG---CAAUGGGA--AUUC-AUGAACCAUGUCAGGUCCGGAAGGAAGCAGC CP000557.1/25310-25574 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUA--CUCGCAAUCCGCUCU-AGCGAG-GCUGA---AUCCCU-UCUC-GAGGUUAG-UCUGUU-GUGAGG-UCUGUC-UCAAGCAAGU-GGU---GUU-GA-CGUCUGGGU---CCCGCG---CAAUGGG---AUUCCGUGAACCCUGUCAGGUCCGGAAGGAAGCAGC CP000232.1/28709-28775 CCGUGCUAGAU-GGGGAGGUAGCGGUGCCCUGUA-ACCCGCAAACCGCUAU-AGCGGG-GUUGA---AGUCCCA------------------------------------------------------------------------------------------------------------------------------ BA000016.3/54529-54793 CCGUGCUAGAU-GGGGAGUUAGCGGUGCCCUGUAA-CCUGCAAUCCGCUAC-AGCAGG-AUCGA---AGUCCUCAUA--GAGGCUCU--AACUU-GUGGAG-UCUG--CCCUAUGUAAGUGGU---GUU-GA-GAGUUGGGC---CCCACG---CAAUGGAAA--CCU-GUGAACCUCGUCAGGUCCGGAAGGAAGCAGC CP000721.1/5829625-5829394 ---UGCUAGAU-GGGGAGUUAGCGGUGCCCUGUAA-CCUGCAAUCCGCUAU-AGCAGG-AUUGA---AUUCCUCGCUU--AGGUAUU--AGCGAUUUAUAG-UCUG--ACUUUUGUAAGUGGU---GUU-GA-UGACUGGGU---CCCACG---CAAUGGAAG--CCC-AUGAACCUCGUCAGAUCUGGAAGGAAGCAGC AE008691.1/46248-46514 CCGUACUAGAU-GGGGAGGUAGCGGUGCCCUGUAG-CCUGCAACCCGCUAU-AGCAGG-GUCGA---AUUCCCAGGCU-GAGGCCUGA-UUUCU-GUAAGG-CCUG--GCGCAAGUAAGUGGCGUU-GA-UACUUGA-GU--CCUGCG------CAACGGAGA--UUU-GCGAACCCCGUCAGGUCCGGAAGGAAGCAGC X15523.1/2-266 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUA--CUCGCAAUCCGCUCU-AGCGAG-GCUGA---AUCCCU-UCUC-GAGGUUAG-UCUGUU-GUGAGG-CCUGUC-UCAAGUAAGU-GGU---GUU-GA-CGUCUGGGU---CCCGCG---CAAUGGGA--UUCC-GUGAACCCUGUCAGGUCCGGAAGGAAGCAGC BA000028.3/30821-31086 ACGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUA--CUCGCAAUCCGCUAU-AGCGGG-GCCGA---AUUCCC-ACUC-GAGGUGGG-ACGACU-UUAUGG-UCUGAC-UUAAGGGAUU-GGU---GUU-GA-CGCCCGGGU---CCUGCG---CAACAGGA--ACCC-ACGAAUCCUGUCAGGUCCGGAAGGAAGCAGC CP000724.1/39593-39767 --GUGCUAGAC-GGGGAGGUAGCGGUGCCCUGUAA-CCUGCAAUCCGCUAU-AGCAGG-GUUGA---AUUCCU-CAUG-GAGGCUUG-UUGCUU-GUAGGG--CUGGC-CUAGAUAAGU-GGU---GAU-GA-GAAUUGGGU---CCUACG---CAAUGAA---AACUCAUGAACUCCGUCAGAUCCGGAAGGAAGCAGC CP000813.1/551215-551244 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCAUGUCAGGUCCGGAAGGAAGCAGC D11418.1/5-269 CCGUGCUAAGC-GGGGAGGUAGCGGUGCCCUGUA--CCUGCAAUCCGCUCU-AGCAGG-GCCGA---AUCCCU-UCUC-GAGGUUCG-UUUACU-UUAAGG-CCUGCC-UUAAGUAAGU-GGU---GUU-GA-CGUUUGGGU---CCUGCG---CAAUGGGA--AUUC-AUGAACCAUGUCAGGUCCGGAAGGAAGCAGC AE000512.1/1124728-1124612 --------------------------------------------------------------------------------------------------------------------------------GGGGGCGAUGAAGA-CCGGGUCCCACGCAACGGA-ACCCU-GUGAACCUGGUCAGGCCCGGGAGGGAGCAGC AC025951.19/16428-16528 --------------------------------------------------------------------------------------------------------------------------------------AUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC AJ938182.1/468421-468690 CCGUGCUAGGU-GGGGAGGUAGCGGUUCCCUGUA--CUCGAAAUCCGCUUUAUGCGAG-GCUUA---AUUCCUUUGUU-GAGGCCGU-AUUUUU-GCGAAG-UCUGCC-CAAAGCACGU-AGU---GUUUGAAGAUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC CP000568.1/2549377-2549203 --GUGCUAGAC-GGGGAGGUAGCGGUGCCCUGUU-ACCUGCAAUCCGCUAU-AGCAGG-GUCGA---AUUCCUAUAAU--AGGCAUG-CUUCUG-UAAGG--UCUG--CCCUUUGCAAGUGGC---GAU-GA-AAAUUGGGU---CCUACG---CAACGGAAG--CCU-AUGAACCCCGUCAGGUUCGGAAGAAAGCAGC AP008934.1/2359274-2359174 --------------------------------------------------------------------------------------------------------------------------------------AUCUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAAUCAUGUCAGGUCCUGACGGAAGCAGC AP009351.1/497755-498024 CCGUGCUAGGU-GGGGAGGUAGCGGUUCCCUGUA--CUCGAAAUCCGCUUUAUGCGAG-GCUUA---AUUCCUUUGUU-GAGGCCGU-AUUUUU-GCGAAG-UCUGCC-CAAAGCACGU-AGU---GUUUGAAGAUUUCGGU---CCUAUG---CAAUAUGA--ACCC-AUGAACCAUGUCAGGUCCUGACGGAAGCAGC CP000312.1/54097-54361 CCGUGCUAGAU-GGGGAGUUAGCGGUGCCCUGUAA-CCUGCAAUCCGCUAC-AGCAGG-AUCGA---AGUCCUCAUA--GAGGCUCU--AACUU-GUGGAG-UCUG--CCCUAUGUAAGUGGU---GUU-GA-GAGUUGGGC---CCCACG---CAAUGGAAA--CCU-GUGAACCUCGUCAGGUCCGGAAGGAAGCAGC AP009049.1/3810996-3810763 -CGUGCUAGAU-GGGGAGUUAGCGGUGCCCUGUA-ACCUGCAAUCCGCUAU-AGCAGG-GUUGA---AUUCCUGGCUU--AGACUUU-AAAAUG-UGAGG--CCUG--CCCCAUAAAAGUGGC---GUU-GA-GAGCUUGGU---CCCACG---CAACAAGAA--CUC-AUGAACCCCGUCAGGUCCGGAAGGAAGCAGC #=GC SS_cons [[[[[[[((((.<<<<<<<<___>>>>>>>>,,,..<<<<<<_________.>>>>>>.)))),...,,,<<<.<<<<.-<<<<<<-..<<<<<.<<<<<-.--<<...<<<<<<--<<.<<<...---.--.<<<<<<<<<...<<<<<<...<<-<<<<<..<<<<.<<<---<<<<<----<<<____>>>---->> #=GC RF cCGuGCcgggc.gGGGggcuAGCggucCCCuGUA..CccGCgAUCCGCUau.cGCggG.gcccA...AUuCCu.ccuc.GcGgcccu..ccccc.gugggG.uCug...ccgagcaAgg.gGc...GUu.GA.cgcccgGGc...cCugcG...caAcggga..accc.gugAACccuGuCAGGuCCGGAAGGaAGCAgC CP000764.1/25247-25511 AAUAAGCGGGUUCUCUCG-UGUG---CCGUAGG--AGUGC-CUGAACUG-----AGCU-AACU-GCUUGA--GUAACGCUUAUG-G-UAC--GUAAUCGACAGA-AGGUGCACGG AE015929.1/2386853-2386584 AUUAAGUGGAUCCUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUU-----AGCU-GUCG-ACUUCG--GUAACGUUUAU--GAUAU--GCGUUCGAUACAAAGGUGCAUGG CP000730.1/508055-508324 AUUAAGUGGAUCAUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUU-----AGCU-AACG-ACUUUG--GUUACGUUCGU--GAAUU--ACGUUCGAUGCUUAGGUGCACGG CP000485.1/25122-25386 AAUAAGCGGGUCUUCUCG-UGUG---CCGCAGG--AGUGC-CUGAACCG-----AGCUAACUG--CUUAA--GUAACGCUUAU--GGUAC--GUAAUCGACAGA-AGGUGCACGG CP000029.1/101125-101225 AUUAAGUGGAUCCUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUUAG---------------------------------------------------------------- X06802.1/5-269 AUUAAGUGAAACCUCUCA-UGUG---CCGCAGG--GUUGC-CUGGGCCG-----AGCU-AACU-GCUUAA--GUAACGCUUAG--GGUAG--CGAAUCGACAGA-AGGUGCACGG D26185.1/90020-90284 AUUAAGUGAAACCUCUCA-UGUG---CCGCAGG--GUUGC-CUGGGCCG-----AGCU-AACU-GCUUAA--GUAACGCUUAG--GGUAG--CGAAUCGACAGA-AGGUGCACGG CP000728.1/33073-33316 GGUAAGUGAACACUUUCG-UGUG---CCGUGGA--UAAAC-CUGAUUUG-----AGCUAACU-GUACAGGUAACG---CUCAU--AAGUUA------------------------ AE001437.1/136141-136243 GGUAAGUGAAAUCUUCCG-UGUG---CCGUGGA--UAAAU-CUGAUUUG-----AGU---------------------------------------------------------- CP000736.1/536869-536969 AUUAAGUGGAUCAUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUU-----AG----------------------------------------------------------- BX571857.1/485579-485679 AUUAAGUGGAUCAUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUU-----AG----------------------------------------------------------- BA000017.4/525852-525952 AUUAAGUGGAUCAUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUU-----AG----------------------------------------------------------- D11420.1/5-270 AUUAAGUGAAACCUCUCA-UGUG---CCGCAGG--GUUGC-CUGGGCUG-----AGCU-AACU-GCUUAA--GUAACGCUUAG--GGUAG--CGAAUCGACAGA-AGGAGCACGG D12926.1/388-490 CAUAAGUGGAUCAUCGCG-UGUG---CCGCAGG--GUAGC-CUGCUCUG-----AGC---------------------------------------------------------- AE016879.1/25115-25379 AAUAAGCGGGUCUUCUCG-UGUG---CCGCAGG--AGUGC-CUGAACCG-----AGCU-AACU-GCUUAA--GUAACGCUUAUG-G-UAC--GUAAUCGACAGA-AGGUGCACGG U15684.1/154-183 AU----------------------------------------------------------------------------------------------------------------- AL596173.1/263987-263721 AUUAAUCAGUGCUUCUCA-UGUG---CCGCGAG--GUUGC-CUGGCCCG-----AGCU-AACU-AUCAAG--GUAACGCAGGU--GAUUG--CAUGUCGAGGUG-AGGUGCGCGA AF269831.1/1333-1433 AUUAAGUGGAUCCUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUUAG---------------------------------------------------------------- BA000018.3/501420-501689 AUUAAGUGGAUCAUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUU-----AGCU-AACG-ACUUUG--GUUACGUUCGU--GAAUU--ACGUUCGAUGCUUAGGUGCACGG CP000716.1/1385812-1385778 CCUAAG------------------------------------------------------------------------------------------------------------- CP000726.1/37731-37974 GGUAAGUGAACACUUUCG-UGUG---CCGUGGA--UAAAC-CUGAUUUG-----AGCUAACU-GUACAGGUAACG---CUCAU--AAGUUA------------------------ CP000448.1/35764-35828 ------------------------------------------------------------------------------------------------------------------- AF269814.1/2629-2729 AUUAAGUGGAUCCUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUUAG---------------------------------------------------------------- X52144.1/697-961 AUUAAGUGAAACCUCUCA-UGUG---CCGCAGG--GUUGC-CUGGGCCG-----AGCU-AACU-GCUUAA--GUAACGCUUAG--GGUAG--CGAAUCGACAGA-AGGUGCACGG CP001186.1/24962-25226 AAUAAGCGGGUCUUCUCG-UGUG---CCGCAGG--AGUGC-CUGAACCG-----AGCU-AACU-GCUUGA--GUAACGCUUAUG-G-UAC--GUAAUCGACGGA-GGGUGCACGG CP000227.1/25236-25338 AAUAAGCGGGUCUUCUCG-UGUG---CCGCAGG--AGUGC-CUGAACCG-----AGC---------------------------------------------------------- CP001175.1/2823285-2823387 AUUAAGCAGUGCUUCUCA-UGUG---CCGCGAG--GUCGC-CUGGCCCG-----AGC---------------------------------------------------------- AE017225.1/25229-25331 AAUAAGCGGGUCUUCUCG-UGUG---CCGCAGG--AGUGC-CUGAACCG-----AGC---------------------------------------------------------- CP000246.1/54302-54566 GAUAAGCAGUCAUUUUCA-UGUG---CCGUGGA--UACGU-CUGGCUUG-----AGCUAACU-GCAUAGGUAACG---UUCAU--AAGUU--AUUGUCG-AAGUGAGGUGCACGG CP000002.3/30682-30947 AUUAAGUGGAACCUUCCA-UGUG---CCGCAGG--GUUGC-CUGGGCUG-----AGCU-AACU-GCUUAA--GUAACGCUUAG--GGUAG--CGAAUCGACAGA-AGGUGCACGG ACHE01000060.1/4624-4355 AUUAAGUGGAUCCUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUU-----AGCU-GUCG-ACUUCG--GUAACGUUUAU--GAUAU--GCGUUCGAUACAAAGGUGCAUGG D11419.1/5-270 AUUAAGUGGACACCCCCA-UGUG---CCGCAGG--GUUAC-CUGGACUG-----AGCU-AACU-ACUUAA--GUAACGCUUAU--GGGUG--CCAGUCGACAGA-AGGUGCACGG CP000560.1/27594-27646 AUUAAGUGAAACCUCU--------------------------------------------------------------------------------------------------- AM180355.1/20131-20368 GGUAAGUGAUCACUUUUG-UGUG---CCGUGGG--GGUGC-CUAAGUUG-----AGCUAACU-GUUUUGGUAACG---CCUAUGG------------------------------ AF368293.1/5-274 AUUAAGUGGAUCAUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUU-----AGCU-AACG-ACUUUG--GUUACGUUCGU--GAAUU--ACGUUCGAUGCUUAGGUGCACGG D11417.1/5-269 AUUAAGUGAAACCUCUCA-UGUG---CCGCAGG--GUUGC-CUGGGCCG-----AGCU-AACU-GCUUAA--GUAACGCUUAG--GGUAG--CGAAUCGACAGA-AGGUGCACGG CP001215.1/24988-25252 AAUAAGCGGGUCUUCUCG-UGUG---CCGCAGG--AGUGC-CUGAACCG-----AGCU-AACU-GCUUAA--GUAA-CGCUUAU-GGUAC--GUAAUCGACAGA-AGGUGCACGG CP000255.1/508278-508378 AUUAAGUGGAUCAUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUU-----AG----------------------------------------------------------- AP006627.1/47077-47179 AGUAAGUGGACCCUUCCG-UGUG---CCGCAGA--GGUGC-CUGGAUCG-----AGC---------------------------------------------------------- CP001185.1/1535075-1535038 CCUAAGC------------------------------------------------------------------------------------------------------------ D13041.1/5-269 AUUAAGUGAAACCUCUCA-UGUG---CCGCAGG--GUUGC-CUGGGCCG-----AGCU-AACU-GCUUAA--GUAACGCUUAG--GGUAG--CGAAUCGACAGA-AGGUGCACGG AE017194.1/25229-25331 AAUAAGCGGGUCUUCUCG-UGUG---CCGCAGG--AGUGC-CUGAACCG-----AGC---------------------------------------------------------- X12642.1/292-556 AUUAAGUGAAACCUCUCA-UGUG---CCGCAGG--GUUGC-CUGGGCCG-----AGCU-AACU-GCUUAA--GUAACGCUUAG--GGUAG--CGAAUCGACAGA-AGGUGCACGG ACFR01000004.1/173539-173639 AUUAAGUGGAUCCUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUUAG---------------------------------------------------------------- D11412.1/5-269 AAUAAGCGGGUCUUCUCG-UGUG---CCGCAGG--AGUGC-CUGAACCG-----AGCU-AACU-GCUUGC--GUAACGCUUAUG-GCUAC--GCAAUCGACAGA-AGGUGCACGG D11416.1/5-269 AUUAAGUGAAACCUCUCA-UGUG---CCGCAGG--GUUGC-CUGGGCCG-----AGCU-AACU-GCUUAA--GUAACGCUUAG--GGUAG--CGAAUCGACAGA-AGGUGCACGG AE015927.1/24077-23975 GGUAAGUGAUAAUUUUCG-UGUG---CCGUGGA--UAAAC-CUGGUUUG-----AGU---------------------------------------------------------- AE017333.1/30486-30751 AUUAAGUGGAACCUUCCA-UGUG---CCGCAGG--GUUGC-CUGGGCUG-----AGCU-AACU-GCUUAA--GUAACGCUUAG--GGUAG--CGAAUCGACAGA-AGGUGCACGG AM412317.1/37716-37959 GGUAAGUGAACACUUUCG-UGUG---CCGUGGA--UAAAC-CUGAUUUG-----AGCUAACU-GUACAGGUAACG---CUCAU--AAGUUA------------------------ D11415.1/5-268 AUUAAGUGAAACCUCUCA-UGUG---CCGCAGG--GUUGC-CUGGGCCG-----AGCU-AACU-GUUUAA--GUAACGCUUGG--GGUAG--CGAAUCGACAGA-AGGUGCACGG AL591984.1/65413-65311 AUUAAGCAGUGCUUCUCA-UGUG---CCGCGAG--GUCGC-CUGGCCCG-----AGC---------------------------------------------------------- CP000382.1/2507879-2507649 GGUAAGUGAGAACUCCUA-UGUG---CCGUAGG--UAAAC-CUGGUUUG-----AGUUAACU-AUAUAAGUAACG---------------------------------------- CP000727.1/37731-37974 GGUAAGUGAACACUUUCG-UGUG---CCGUGGA--UAAAC-CUGAUUUG-----AGCUAACU-GUACAGGUAACG---CUCAU--AAGUUA------------------------ BA000043.1/27043-27145 AGUAAGCGGAUGCUCCCA-UGUG---CCGCGGG--GACGC-CUGGGCUG-----AGC---------------------------------------------------------- BA000004.3/46485-46751 AGUAAGUGGCCCCUUUCG-UGUG---CCGUAGA--GUCGC-CUGGGCCG-----AGCU-AACU-GCUCAG--GUAACGCCUAGG-GUGGC--AUGAUCGAAGGA-AGGUGCACGG CP000702.1/1631640-1631756 CAUAAGCAGGUGUUUCCGUGUG---CCGUGGGGG-AG-CC-CGGUUGGAGCCUU------------------------------------------------------------- CP000253.1/444208-444308 AUUAAGUGGAUCAUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUU-----AG----------------------------------------------------------- CP000046.1/524416-524685 AUUAAGUGGAUCAUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUU-----AGCU-AACG-ACUUUG--GUUACGUUCGU--GAAUU--ACGUUCGAUGCUUAGGUGCACGG CP000001.1/25120-25384 AAUAAGCGGGUCUUCUCG-UGUG---CCGCAGG--AGUGC-CUGAACCG-----AGCU-AACU-GCUUAA--GUAACGCUUAUG-G-UAC--GUAAUCGACAGA-AGGUGCACGG CP001283.1/25232-25334 AAUAAGCGGGUCUUCUCG-UGUG---CCGCAGG--AGUGC-CUGAACCG-----AGC---------------------------------------------------------- AE017262.2/2736493-2736285 AUUAAGCAGUGCUUCUCA-UGUG---CCGCGAG--GUCGC-CUGGCCCG-----AGCU-AACU-AUCAGG--GUAACGCAGAU--GAUUGC--AUGUCGAUGUG-AGGUGCGCGA D11421.1/5-270 AUUAAGUGAAACCUCUCA-UGUG---CCGCAGG--GUUGC-CUGGGCCG-----AGCU-AACU-GCUUAA--GUAACGCUUAG--GGUAG--CGAAUCGACAGA-AGGUGCACGG CP001598.1/25015-25279 AAUAAGCGGGUCUUCUCG-UGUG---CCGCAGG--AGUGC-CUGAACCG-----AGCU-AACU-GCUUAA--GUAACGCUUAUG-G-UAC--GUAAUCGACAGA-AGGUGCACGG D14472.1/475-743 CAUAAGUGGAUCAUCGCG-UGUG---CCGCAGG--GUAGC-CUGCUCUG-----AGCU-GCUA-CCAUAA--GUAACGCUCGG--AUAAG-GAUUAUCGAAGAU-AGGUGCACGG CP000703.1/536798-536898 AUUAAGUGGAUCAUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUU-----AG----------------------------------------------------------- AP009324.1/527299-527399 AUUAAGUGGAUCAUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUU-----AG----------------------------------------------------------- D11422.1/5-266 AGUAAGUGGCCCCUUUCG-UGUG---CCGUAGA--GUCGC--UGGGCCG-----AGCU-AACU-GCUCAG--GUAACGCUAGG--GUGGC--AUGAUCGACAGA-AGGUGCACGG CP000141.1/2376482-2376447 ACUAAG------------------------------------------------------------------------------------------------------------- D49784.1/286-550 GAUAAGCAGUCAUUUUCA-UGUG---CCGUGGA--UACGU-CUGGCUUG-----AGCUAACU-GCAUAGGUAACG---UUCAU--AAGUU--AUUGUCG-AAGUGAGGUGCACGG AL009126.3/26420-26684 AUUAAGUGAAACCUCUCA-UGUG---CCGCAGG--GUUGC-CUGGGCCG-----AGCU-AACU-GCUUAA--GUAACGCUUAG--GGUAG--CGAAUCGACAGA-AGGUGCACGG AP006716.1/2548377-2548277 AUUAAGUGGAUCCUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUUAG---------------------------------------------------------------- D11413.1/5-264 AAUAAGCGGU-CUUCUCG-UGUG---CCG-AG---AGUGC-CUGAACCG-----AGCU-AACU-GCUUGA--GUAACG-UUAU--GGUAC--GUAAUCGACAGA-AGGUGCACGG D11414.1/5-268 AGUAAGCAGAACCUCUCA-UGUG---CCAUGGG--GUCGC-CUGAACCG-----AGCU-AACU-GCUUAA--GUAACGCCUGG--GGUGG--CUAAUCGACAGA-AGGUGCACGG X14796.1/291-555 AUUAAGUGAAACCUCUCA-UGUG---CCGCAGG--GUUGC-CUGGGCCG-----AGCU-AACU-GCUUAA--GUAACGCUUAG--GGUAG--CGAAUCGACAGA-AGGUGCACGG CP000557.1/25310-25574 AGUAAGCGGAUGCUCCCA-UGUG---CCGCGGG--GGUGC-CUGGGCUG-----AGCUA-ACU-ACUUGA--GCAACGCUCGG--GGCAGC--UAAUCGACAGA-AGGUGCACGG CP000232.1/28709-28775 ------------------------------------------------------------------------------------------------------------------- BA000016.3/54529-54793 GAUAAGCAGUCAUUUUCA-UGUG---CCGUGGA--UACGU-CUGGCUUG-----AGCUAACU-GCAUAGGUAACG---UUCAU--AAGUU--AUUGUCG-AAGUGAGGUGCACGG CP000721.1/5829625-5829394 GAUAAGUGGUUCCUUCCA-UGUG---CCGUGGA--UCAAU-CUGGUCUG-----AGCUAACU-GCAUUAGUAACG---U------------------------------------ AE008691.1/46248-46514 GGUAAGCAAACACCUCCG-UGUGCCGCAGG--GGU-GCUUGAGUGG--------AGCUAACU-GCUUGCGUAACG---CUUAU--GGGGA--CAGGUCG-AAGCUGGGUGUACGG X15523.1/2-266 AGUUAGCGGAUGCUCCCA-UGUG---CCGCGGG--GGCGC-CUGGGCUG-----AGCC-AACU-GCUUGA--GCAACGCUCGG--GGCAG--CUAAUCGACAGA-AGGUGCACGG BA000028.3/30821-31086 AGUAAGUGGUUAUUCUUG-UGUG---CCGCAGG--GAAGC-CUAGGCCG-----AGCC-AUGA-ACUUAU--GUAGCGCAUAG--GGUCG-UUUCAUCGACAGU-GGGUGCACGU CP000724.1/39593-39767 GGUAAG------------------------------------------------------------------------------------------------------------- CP000813.1/551215-551244 AU----------------------------------------------------------------------------------------------------------------- D11418.1/5-269 AUUAAGUGAAACCUCUCA-UGUG---CCGCAGG--UUGCC-UUGGGCCG-----AGCU-AACU-GCUUAA--GUAACGCUUAG--GGUAG--CGAAUCGACAGA-AGGUGCACGG AE000512.1/1124728-1124612 CAUAAGCAGGUGUUUCCGUGUG---CCGUGGGGG-AG-CC-CGGUUGGAGCCUU------------------------------------------------------------- AC025951.19/16428-16528 AUUAAGUGGAUCAUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUU-----AG----------------------------------------------------------- AJ938182.1/468421-468690 AUUAAGUGGAUCAUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUU-----AGCU-AACG-ACUUUG--GUUACGUUCGU--GAAUU--ACGUUCGAUGCUUAGGUGCACGG CP000568.1/2549377-2549203 GGUAAG------------------------------------------------------------------------------------------------------------- AP008934.1/2359274-2359174 AUUAAGUGGAUCAUCGUA-UGUG---CCGUAGG--GUUGC-CGAGAUUUAG---------------------------------------------------------------- AP009351.1/497755-498024 AUUAAGUGGAUCAUCAUA-UGUG---CCGUAGG--GUAGC-CGAGAUUU-----AGCU-AACG-ACUUUG--GUUACGUUCGU--GAAUU--ACGUUCGAUGCUUAGGUGCACGG CP000312.1/54097-54361 GAUAAGCAGUCAUUUUCA-UGUG---CCGUGGA--UACGU-CUGGCUUG-----AGCUAACU-GCAUAGGUAACG---UUCAU--AAGUU--AUUGUCG-AAGUGAGGUGCACGG AP009049.1/3810996-3810763 GGUAAGUGAAUAUUUUUG-UGUG---CCGUGGA--UAAAC-CUGGUUUG-----AGUUAACU-AUAUGGGUAACG---CU----------------------------------- #=GC SS_cons >>>->>>>>>>-->>>>>.>>--...->>>>>>..--->>.>>>>>>>-.....->>>.->>..>>>>>>..->>...>>>>>..>>>>>...>>>>>>.>>>>.>>>]]]]]]] #=GC RF aguAagcgggucuucccg.ugUG...CCgcaGg..guugC.Ccgggcgg.....AgCc.Acc..gcucgg..gca...cccac..ggggg...gggcCg.gagg.aGGgGCaCGg //