--- dataset_info: - config_name: default features: - name: id dtype: string - name: text dtype: string - name: tokens sequence: string - name: start_offsets sequence: uint32 - name: labels sequence: class_label: names: '0': O '1': B-PROGRAMMINGENVIRONMENT '2': I-PROGRAMMINGENVIRONMENT '3': B-SOFTWARECOREFERENCE '4': I-SOFTWARECOREFERENCE '5': B-APPLICATION '6': I-APPLICATION '7': B-PLUGIN '8': I-PLUGIN '9': B-OPERATINGSYSTEM '10': I-OPERATINGSYSTEM '11': B-ALTERNATIVENAME '12': I-ALTERNATIVENAME '13': B-URL '14': I-URL '15': B-ABBREVIATION '16': I-ABBREVIATION '17': B-LICENSE '18': I-LICENSE '19': B-CITATION '20': I-CITATION '21': B-VERSION '22': I-VERSION '23': B-EXTENSION '24': I-EXTENSION '25': B-RELEASE '26': I-RELEASE '27': B-DEVELOPER '28': I-DEVELOPER - name: software sequence: - name: name dtype: string - name: type dtype: string - name: alternativename dtype: string - name: url sequence: string - name: abbreviation sequence: string - name: license sequence: string - name: citation sequence: string - name: version sequence: string - name: extension sequence: string - name: release sequence: string - name: developer sequence: string splits: - name: test num_bytes: 10731426 num_examples: 97 download_size: 3467360 dataset_size: 10731426 - config_name: plos_methods features: - name: id dtype: string - name: text dtype: string - name: tokens sequence: string - name: start_offsets sequence: uint32 - name: labels sequence: class_label: names: '0': O '1': B-PROGRAMMINGENVIRONMENT '2': I-PROGRAMMINGENVIRONMENT '3': B-SOFTWARECOREFERENCE '4': I-SOFTWARECOREFERENCE '5': B-APPLICATION '6': I-APPLICATION '7': B-PLUGIN '8': I-PLUGIN '9': B-OPERATINGSYSTEM '10': I-OPERATINGSYSTEM '11': B-ALTERNATIVENAME '12': I-ALTERNATIVENAME '13': B-URL '14': I-URL '15': B-ABBREVIATION '16': I-ABBREVIATION '17': B-LICENSE '18': I-LICENSE '19': B-CITATION '20': I-CITATION '21': B-VERSION '22': I-VERSION '23': B-EXTENSION '24': I-EXTENSION '25': B-RELEASE '26': I-RELEASE '27': B-DEVELOPER '28': I-DEVELOPER - name: software sequence: - name: name dtype: string - name: type dtype: string - name: alternativename dtype: string - name: url sequence: string - name: abbreviation sequence: string - name: license sequence: string - name: citation sequence: string - name: version sequence: string - name: extension sequence: string - name: release sequence: string - name: developer sequence: string splits: - name: test num_bytes: 19566214 num_examples: 480 download_size: 5865285 dataset_size: 19566214 - config_name: plos_sentences features: - name: id dtype: string - name: text dtype: string - name: tokens sequence: string - name: start_offsets sequence: uint32 - name: labels sequence: class_label: names: '0': O '1': B-PROGRAMMINGENVIRONMENT '2': I-PROGRAMMINGENVIRONMENT '3': B-SOFTWARECOREFERENCE '4': I-SOFTWARECOREFERENCE '5': B-APPLICATION '6': I-APPLICATION '7': B-PLUGIN '8': I-PLUGIN '9': B-OPERATINGSYSTEM '10': I-OPERATINGSYSTEM '11': B-ALTERNATIVENAME '12': I-ALTERNATIVENAME '13': B-URL '14': I-URL '15': B-ABBREVIATION '16': I-ABBREVIATION '17': B-LICENSE '18': I-LICENSE '19': B-CITATION '20': I-CITATION '21': B-VERSION '22': I-VERSION '23': B-EXTENSION '24': I-EXTENSION '25': B-RELEASE '26': I-RELEASE '27': B-DEVELOPER '28': I-DEVELOPER - name: software sequence: - name: name dtype: string - name: type dtype: string - name: alternativename dtype: string - name: url sequence: string - name: abbreviation sequence: string - name: license sequence: string - name: citation sequence: string - name: version sequence: string - name: extension sequence: string - name: release sequence: string - name: developer sequence: string splits: - name: test num_bytes: 526571 num_examples: 677 download_size: 155526 dataset_size: 526571 - config_name: pubmed_fulltext features: - name: id dtype: string - name: text dtype: string - name: tokens sequence: string - name: start_offsets sequence: uint32 - name: labels sequence: class_label: names: '0': O '1': B-PROGRAMMINGENVIRONMENT '2': I-PROGRAMMINGENVIRONMENT '3': B-SOFTWARECOREFERENCE '4': I-SOFTWARECOREFERENCE '5': B-APPLICATION '6': I-APPLICATION '7': B-PLUGIN '8': I-PLUGIN '9': B-OPERATINGSYSTEM '10': I-OPERATINGSYSTEM '11': B-ALTERNATIVENAME '12': I-ALTERNATIVENAME '13': B-URL '14': I-URL '15': B-ABBREVIATION '16': I-ABBREVIATION '17': B-LICENSE '18': I-LICENSE '19': B-CITATION '20': I-CITATION '21': B-VERSION '22': I-VERSION '23': B-EXTENSION '24': I-EXTENSION '25': B-RELEASE '26': I-RELEASE '27': B-DEVELOPER '28': I-DEVELOPER - name: software sequence: - name: name dtype: string - name: type dtype: string - name: alternativename dtype: string - name: url sequence: string - name: abbreviation sequence: string - name: license sequence: string - name: citation sequence: string - name: version sequence: string - name: extension sequence: string - name: release sequence: string - name: developer sequence: string splits: - name: test num_bytes: 10731426 num_examples: 97 download_size: 3467360 dataset_size: 10731426 configs: - config_name: default data_files: - split: test path: data/test-* - config_name: plos_methods data_files: - split: test path: plos_methods/test-* - config_name: plos_sentences data_files: - split: test path: plos_sentences/test-* - config_name: pubmed_fulltext data_files: - split: test path: pubmed_fulltext/test-* --- # SoMeSci Dataset SoMeSci dataset is a dataset of software mentions in scientific papers. This dataset was converted from the original GitHUB repository [SoMeSci](https://github.com/dave-s477/SoMeSci). The original upload is containing some documents without content. These documents are removed from this dataset. ## Configurations This dataset is available in three configurations that corresponds to original SoMeSci subsets: - `pubmed_fulltext` (default) - `plos_methods` - `plos_sentences` ## Fields description All configurations contain the following fields: - `id`: The unique identifier of the example. Corresponds to sample file name in the original dataset. - `text`: The text of the paragraph or the full text of the paper. - `tokens`: Tokenized text for which the labels are provided. - `start_offsets`: The start character offsets of the tokens in the text. - `labels`: The labels of the tokens. The labels are in the BIO format: - `0`: O - `1`: B-PROGRAMMINGENVIRONMENT - `2`: I-PROGRAMMINGENVIRONMENT - `3`: B-SOFTWARECOREFERENCE - `4`: I-SOFTWARECOREFERENCE - `5`: B-APPLICATION - `6`: I-APPLICATION - `7`: B-PLUGIN - `8`: I-PLUGIN - `9`: B-OPERATINGSYSTEM - `10`: I-OPERATINGSYSTEM - `11`: B-ALTERNATIVENAME - `12`: I-ALTERNATIVENAME - `13`: B-URL - `14`: I-URL - `15`: B-ABBREVIATION - `16`: I-ABBREVIATION - `17`: B-LICENSE - `18`: I-LICENSE - `19`: B-CITATION - `20`: I-CITATION - `21`: B-VERSION - `22`: I-VERSION - `23`: B-EXTENSION - `24`: I-EXTENSION - `25`: B-RELEASE - `26`: I-RELEASE - `27`: B-DEVELOPER - `28`: I-DEVELOPER - `software`: Document level software mentions. Contains the following fields: - `name` - `type` - `alternativename` - `url` - `abbreviation` - `license` - `citation` - `version` - `extension` - `release` - `developer` Disambiguation is done on lexical level. Meaning that two software names are considered different if they have different normalized forms.