Merge ir_slo into slo modality (RAVIR is IR-SLO); 9->8 modalities
Browse files
README.md
CHANGED
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@@ -22,7 +22,7 @@ tags:
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- pretraining
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size_categories:
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- 1M<n<10M
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pretty_name: ZJU Eye-Pretrain (Private Shanghai Topcon + 56 public cohorts,
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configs:
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- config_name: denoising_test
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data_files:
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## Composition
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**1,179,458 images · 57 cohorts ·
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| modality | images | cohorts |
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|---|---:|---:|
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| OCT B-scan (`oct_bscan`) | 839,729 | 22 |
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| color fundus (`fundus_color`) | 284,685 | 28 |
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| SLO
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| ultra-widefield fundus (`uwf_fundus`) | 13,321 | 4 |
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| OCT-angiography en-face (`octa_enface`) | 1,500 | 1 |
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| en-face OCT (`oct_enface`) | 1,500 | 1 |
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| fluorescein angiography (`fluorescein_angiography`) | 1,376 | 1 |
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| slit-lamp (`slit_lamp`) | 1,320 | 1 |
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| IR-SLO (`ir_slo`) | 42 | 1 |
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> Two cohorts are multi-modal and are counted under each modality they contribute: `shanghai_topcon` (private; OCT + SLO + fundus) and `gamma_multimodal` (OCT + fundus). Per-modality cohort counts therefore sum to 60 over 57 unique cohorts.
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| `uwf_disease` | 700 | 7-class (AMD / DR / PM / RD / RVO / uveitis / normal) |
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| `deepdrid_uwf` | 202 | DR grading |
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### SLO
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### Smaller modalities (1 cohort each)
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| modality | images | cohort | task |
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| en-face OCT | 1,500 | `octa500_oct_enface` | OCT depth projections |
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| fluorescein angiography | 1,376 | `iovs_fa` | leakage (DME) + late-phase masks |
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| slit-lamp | 1,320 | `nuclear_cataract` | nuclear cataract |
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| IR-SLO | 42 | `ravir_av` | artery/vein segmentation |
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> OCT-public quality screen: B-scans with height < 256 px were removed — the `nyu_poag` cohort entirely (56,576) plus 1,891 sub-256px from `thoct1800`/`octdl`.
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- pretraining
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size_categories:
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- 1M<n<10M
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+
pretty_name: ZJU Eye-Pretrain (Private Shanghai Topcon + 56 public cohorts, 8 modalities)
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configs:
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- config_name: denoising_test
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data_files:
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## Composition
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**1,179,458 images · 57 cohorts · 8 modalities**, under one strict 41-column unified manifest schema. Stored as HF parquet shards in `data/{private_topcon, public_fundus, public_oct, public_new}/`; loadable by batch or by single cohort (57 configs, see YAML above).
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| modality | images | cohorts |
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|---|---:|---:|
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| OCT B-scan (`oct_bscan`) | 839,729 | 22 |
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| color fundus (`fundus_color`) | 284,685 | 28 |
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| SLO (`slo_gray`) | 36,027 | 2 |
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| ultra-widefield fundus (`uwf_fundus`) | 13,321 | 4 |
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| OCT-angiography en-face (`octa_enface`) | 1,500 | 1 |
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| en-face OCT (`oct_enface`) | 1,500 | 1 |
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| fluorescein angiography (`fluorescein_angiography`) | 1,376 | 1 |
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| slit-lamp (`slit_lamp`) | 1,320 | 1 |
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> Two cohorts are multi-modal and are counted under each modality they contribute: `shanghai_topcon` (private; OCT + SLO + fundus) and `gamma_multimodal` (OCT + fundus). Per-modality cohort counts therefore sum to 60 over 57 unique cohorts.
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| `uwf_disease` | 700 | 7-class (AMD / DR / PM / RD / RVO / uveitis / normal) |
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| `deepdrid_uwf` | 202 | DR grading |
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### SLO — 36,027 (2 cohorts)
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Confocal scanning-laser ophthalmoscopy, en-face grayscale (both near-infrared).
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- `shanghai_topcon` (private) — 35,985 — Topcon DRI OCT Triton near-IR SLO localizer.
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- `ravir_av` — 42 — Heidelberg Spectralis IR-SLO (815 nm), with artery/vein segmentation masks.
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### Smaller modalities (1 cohort each)
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| modality | images | cohort | task |
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| en-face OCT | 1,500 | `octa500_oct_enface` | OCT depth projections |
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| fluorescein angiography | 1,376 | `iovs_fa` | leakage (DME) + late-phase masks |
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| slit-lamp | 1,320 | `nuclear_cataract` | nuclear cataract |
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> OCT-public quality screen: B-scans with height < 256 px were removed — the `nyu_poag` cohort entirely (56,576) plus 1,891 sub-256px from `thoct1800`/`octdl`.
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