import csv import json from collections import Counter VALID_LABELS = {"coherent", "tradeoff", "collapse_risk"} LEVEL_MAP = {"low": 0, "medium": 1, "high": 2} YESNO_MAP = {"no": 0, "yes": 1} REQUIRED_GOLD_COLS = [ "trial_id", "protocol_deviation", "staffing_drift", "adjudication_variance", "missingness_bias", "label", ] def _norm(x) -> str: return str(x).strip().lower() def _level(x, name: str) -> int: s = _norm(x) if s not in LEVEL_MAP: raise ValueError(f"Bad {name} value: {x}") return LEVEL_MAP[s] def _yesno(x, name: str) -> int: s = _norm(x) if s not in YESNO_MAP: raise ValueError(f"Bad {name} value: {x}") return YESNO_MAP[s] def _validate_gold_row(r: dict): for c in REQUIRED_GOLD_COLS: if c not in r: raise ValueError(f"Missing column: {c}") lab = str(r["label"]).strip() if lab not in VALID_LABELS: raise ValueError(f"Bad label: {r['label']}") _level(r["protocol_deviation"], "protocol_deviation") _yesno(r["staffing_drift"], "staffing_drift") _level(r["adjudication_variance"], "adjudication_variance") _level(r["missingness_bias"], "missingness_bias") def _extract_pred_label(pred_row: dict) -> str: v = pred_row.get("label") or pred_row.get("prediction") or pred_row.get("output") or "" s = str(v).strip() if s in VALID_LABELS: return s if s.startswith("{") and s.endswith("}"): try: obj = json.loads(s) if isinstance(obj, dict) and "label" in obj: lab = str(obj["label"]).strip() if lab in VALID_LABELS: return lab except Exception: pass return "invalid" def rule_pred(g: dict) -> str: pdv = _level(g["protocol_deviation"], "protocol_deviation") sdr = _yesno(g["staffing_drift"], "staffing_drift") adv = _level(g["adjudication_variance"], "adjudication_variance") mss = _level(g["missingness_bias"], "missingness_bias") if pdv == 2 and adv == 2 and mss == 2 and sdr == 1: return "collapse_risk" # coherent allows one medium across the level fields, only if staffing drift is absent levels = [pdv, adv, mss] high_count = sum(v == 2 for v in levels) total = sum(levels) if sdr == 0 and high_count == 0 and total <= 1: return "coherent" return "tradeoff" def risk_score(g: dict) -> float: pdv = _level(g["protocol_deviation"], "protocol_deviation") sdr = _yesno(g["staffing_drift"], "staffing_drift") adv = _level(g["adjudication_variance"], "adjudication_variance") mss = _level(g["missingness_bias"], "missingness_bias") raw = pdv + adv + mss + (2 * sdr) # max raw = 2+2+2+2 = 8 return raw / 8.0 def run_scorer(preds_csv_path: str, gold_csv_path: str): with open(gold_csv_path, newline="", encoding="utf-8") as gf: gold_rows = list(csv.DictReader(gf)) for r in gold_rows: _validate_gold_row(r) with open(preds_csv_path, newline="", encoding="utf-8") as pf: pred_rows = list(csv.DictReader(pf)) pred_by_id = {} for r in pred_rows: pid = r.get("trial_id") or r.get("id") if pid is None: continue pred_by_id[str(pid).strip()] = r total = 0 correct = 0 confusion = Counter() errors = [] missing_ids = [] for g in gold_rows: gid = str(g["trial_id"]).strip() gold = str(g["label"]).strip() pr = pred_by_id.get(gid) if pr is None: pred = "missing" missing_ids.append(gid) else: pred = _extract_pred_label(pr) confusion[(gold, pred)] += 1 if pred == gold: correct += 1 else: errors.append({ "trial_id": gid, "gold": gold, "pred": pred, "rule_pred": rule_pred(g), "risk_score": round(risk_score(g), 4), }) total += 1 report = { "n": total, "accuracy": (correct / total) if total else 0.0, "confusion": {f"{k[0]}->{k[1]}": v for k, v in confusion.items()}, "avg_risk_score": round(sum(risk_score(r) for r in gold_rows) / max(1, len(gold_rows)), 4), "errors_sample": errors[:25], "missing_ids": missing_ids[:50], } return report if __name__ == "__main__": import argparse p = argparse.ArgumentParser() p.add_argument("--preds_csv", required=True) p.add_argument("--gold_csv", required=True) args = p.parse_args() print(json.dumps(run_scorer(args.preds_csv, args.gold_csv), indent=2))