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- sidecars/farafenni_malaria/farafenni_malaria_s0001_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0003_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0006_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0007_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0008_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0011_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0012_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0013_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0014_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0015_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0018_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0019_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0022_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0023_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0024_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0025_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0027_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0028_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0029_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0030_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0031_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0035_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0036_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0037_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0042_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0043_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0044_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0045_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0046_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0048_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0049_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0050_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0051_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0054_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0056_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0057_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0060_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0061_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0062_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0066_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0067_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0069_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0070_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0072_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0073_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0074_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0075_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0078_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0079_label_positive_jitter_sidecar.json +151 -0
- sidecars/farafenni_malaria/farafenni_malaria_s0080_label_positive_jitter_sidecar.json +151 -0
sidecars/farafenni_malaria/farafenni_malaria_s0001_label_positive_jitter_sidecar.json
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| 1 |
+
{
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| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
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| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
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| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
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| 5 |
+
"chip_id": "farafenni_malaria_s0001_label_positive_jitter",
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| 6 |
+
"aoi_id": "farafenni_malaria",
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| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
+
"center": {
|
| 16 |
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"lon": -15.525216413060567,
|
| 17 |
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"lat": 13.542044491305262
|
| 18 |
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},
|
| 19 |
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"bbox": [
|
| 20 |
+
-15.548342393556052,
|
| 21 |
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| 22 |
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-15.502090432565083,
|
| 23 |
+
13.56452753145323
|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0001_label_positive_jitter_packet.png",
|
| 33 |
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"sha256": "22d009592fa7bdb44692d104529cb4b68f809e8270e2487a4b6c75f2d4b05005",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0001_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0001_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0001_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0001_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0001_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0001_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0001_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
+
"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
+
"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
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"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
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"quality": {
|
| 81 |
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"evidence_packet_available": true,
|
| 82 |
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"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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"mapbox_target_visible": true,
|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 61.7244,
|
| 91 |
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"repair_attempts": 0
|
| 92 |
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},
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| 93 |
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"numeric_features": {
|
| 94 |
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"raster_stats": {
|
| 95 |
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"rainfall_chirps": {
|
| 96 |
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"valid_pixels": 262144,
|
| 97 |
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"min": -502.6722,
|
| 98 |
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"max": 0.0,
|
| 99 |
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"mean": -7.7482,
|
| 100 |
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"median": 0.0,
|
| 101 |
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"p90": 0.0
|
| 102 |
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},
|
| 103 |
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"land_cover_worldcover": {
|
| 104 |
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"valid_pixels": 0
|
| 105 |
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},
|
| 106 |
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"population_worldpop": {
|
| 107 |
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"valid_pixels": 0
|
| 108 |
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},
|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
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"valid_pixels": 0
|
| 111 |
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},
|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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"valid_pixels": 0
|
| 114 |
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},
|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
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"valid_pixels": 0
|
| 117 |
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},
|
| 118 |
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"jrc_gsw_extent": {
|
| 119 |
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"valid_pixels": 0
|
| 120 |
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}
|
| 121 |
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},
|
| 122 |
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"osm_counts": {
|
| 123 |
+
"health_facilities": 0,
|
| 124 |
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"major_roads": 18,
|
| 125 |
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"schools_waterpoints": 0,
|
| 126 |
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"urban_landuse": 322,
|
| 127 |
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"water_surface": 0,
|
| 128 |
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"waterways": 0
|
| 129 |
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},
|
| 130 |
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"label_counts": {
|
| 131 |
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"vector_label": 0,
|
| 132 |
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"disease_label": 15,
|
| 133 |
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"intermediate_host_label": 0,
|
| 134 |
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"disease_aggregate": 0
|
| 135 |
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}
|
| 136 |
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},
|
| 137 |
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"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
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sidecars/farafenni_malaria/farafenni_malaria_s0003_label_positive_jitter_sidecar.json
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|
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|
|
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|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
|
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|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
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|
| 4 |
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"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
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"chip_id": "farafenni_malaria_s0003_label_positive_jitter",
|
| 6 |
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|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
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"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
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"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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|
| 17 |
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|
| 18 |
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|
| 19 |
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|
| 20 |
+
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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],
|
| 25 |
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"panel_order": [
|
| 26 |
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"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
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"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
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"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0003_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "5debccc564afe4aebb9bcc4d56f6c56d966650ec28df3f60c8b0fd719a432df1",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
+
"source_assets": {
|
| 38 |
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"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0003_label_positive_jitter",
|
| 40 |
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"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0003_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0003_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0003_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0003_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0003_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0003_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
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"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
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"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
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"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
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"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
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"map_vector": [
|
| 73 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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"mapbox_target_visible": true,
|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 66.3244,
|
| 91 |
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|
| 92 |
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},
|
| 93 |
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"numeric_features": {
|
| 94 |
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"raster_stats": {
|
| 95 |
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|
| 96 |
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|
| 97 |
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"min": 0.0,
|
| 98 |
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|
| 99 |
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"mean": 0.0,
|
| 100 |
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"median": 0.0,
|
| 101 |
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"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
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},
|
| 106 |
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"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
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},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
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"valid_pixels": 0
|
| 114 |
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},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
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"jrc_gsw_extent": {
|
| 119 |
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|
| 120 |
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}
|
| 121 |
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},
|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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"waterways": 0
|
| 129 |
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},
|
| 130 |
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"label_counts": {
|
| 131 |
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"vector_label": 0,
|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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}
|
| 136 |
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},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
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"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
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"license_flags": {
|
| 142 |
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"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
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"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
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"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
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"weak_labels": "presence_and_survey_biased"
|
| 146 |
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},
|
| 147 |
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"sampling": {
|
| 148 |
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"sample_type": "label_positive_jitter",
|
| 149 |
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"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0006_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0006_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
+
"lon": -15.699610656374452,
|
| 17 |
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"lat": 13.54078200532571
|
| 18 |
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},
|
| 19 |
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"bbox": [
|
| 20 |
+
-15.72273651414365,
|
| 21 |
+
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|
| 22 |
+
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|
| 23 |
+
13.563265045473678
|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
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"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
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"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0006_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "a4374ce33903bee9366e66df9b0020d6cf7459bf9d6c94edb58ea1b1e7caade9",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0006_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0006_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0006_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0006_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0006_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0006_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0006_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
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"source_layers": {
|
| 47 |
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"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
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"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
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"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
+
"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
+
"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
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"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 55.7513,
|
| 91 |
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"repair_attempts": 0
|
| 92 |
+
},
|
| 93 |
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"numeric_features": {
|
| 94 |
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"raster_stats": {
|
| 95 |
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"rainfall_chirps": {
|
| 96 |
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"valid_pixels": 262144,
|
| 97 |
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"min": -1290.3842,
|
| 98 |
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"max": 0.0,
|
| 99 |
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"mean": -50.6895,
|
| 100 |
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"median": 0.0,
|
| 101 |
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"p90": 0.0
|
| 102 |
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},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
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"osm_counts": {
|
| 123 |
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"health_facilities": 0,
|
| 124 |
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"major_roads": 22,
|
| 125 |
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"schools_waterpoints": 0,
|
| 126 |
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"urban_landuse": 64,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
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"vector_label": 12,
|
| 132 |
+
"disease_label": 0,
|
| 133 |
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"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0007_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
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|
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|
|
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|
|
|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0007_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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"lon": -15.534087721590904,
|
| 17 |
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"lat": 13.538655145892953
|
| 18 |
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},
|
| 19 |
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"bbox": [
|
| 20 |
+
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0007_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "127d9f3702a766b7db6f77041e26e16a7dca9de26d86df7ad58c0725b7b81d76",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0007_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0007_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0007_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0007_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0007_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0007_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0007_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
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"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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},
|
| 56 |
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"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
+
"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
+
"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
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}
|
| 76 |
+
},
|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
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},
|
| 80 |
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"quality": {
|
| 81 |
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"evidence_packet_available": true,
|
| 82 |
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"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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"mapbox_target_visible": true,
|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 56.1256,
|
| 91 |
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"repair_attempts": 0
|
| 92 |
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},
|
| 93 |
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"numeric_features": {
|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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"min": -1130.1628,
|
| 98 |
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|
| 99 |
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|
| 100 |
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"median": 0.0,
|
| 101 |
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|
| 102 |
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},
|
| 103 |
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"land_cover_worldcover": {
|
| 104 |
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"valid_pixels": 0
|
| 105 |
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},
|
| 106 |
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"population_worldpop": {
|
| 107 |
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"valid_pixels": 0
|
| 108 |
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},
|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
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"valid_pixels": 0
|
| 111 |
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},
|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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"valid_pixels": 0
|
| 114 |
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},
|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
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"valid_pixels": 0
|
| 117 |
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},
|
| 118 |
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"jrc_gsw_extent": {
|
| 119 |
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"valid_pixels": 0
|
| 120 |
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}
|
| 121 |
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},
|
| 122 |
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"osm_counts": {
|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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},
|
| 130 |
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"label_counts": {
|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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"disease_aggregate": 0
|
| 135 |
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}
|
| 136 |
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},
|
| 137 |
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"label_quality": {
|
| 138 |
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"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0008_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
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|
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|
|
|
|
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|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0008_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
+
"lon": -15.467437199408145,
|
| 17 |
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"lat": 13.574847242689968
|
| 18 |
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|
| 19 |
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"bbox": [
|
| 20 |
+
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|
| 21 |
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|
| 22 |
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|
| 23 |
+
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|
| 24 |
+
],
|
| 25 |
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"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0008_label_positive_jitter_packet.png",
|
| 33 |
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"sha256": "7d934f0575e9029aeda47be4be3b9671d36af7843e67dcc790affd0d282a9276",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0008_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0008_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0008_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0008_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0008_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0008_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0008_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
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"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
+
"mapbox_available": true,
|
| 84 |
+
"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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"mapbox_target_visible": true,
|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 67.4522,
|
| 91 |
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"repair_attempts": 0
|
| 92 |
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},
|
| 93 |
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"numeric_features": {
|
| 94 |
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"raster_stats": {
|
| 95 |
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"rainfall_chirps": {
|
| 96 |
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|
| 97 |
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"min": 0.0,
|
| 98 |
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"max": 0.0,
|
| 99 |
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"mean": 0.0,
|
| 100 |
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"median": 0.0,
|
| 101 |
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"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
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"valid_pixels": 0
|
| 105 |
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},
|
| 106 |
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"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
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},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
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"valid_pixels": 0
|
| 114 |
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},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
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"jrc_gsw_extent": {
|
| 119 |
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"valid_pixels": 0
|
| 120 |
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}
|
| 121 |
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},
|
| 122 |
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"osm_counts": {
|
| 123 |
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|
| 124 |
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|
| 125 |
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"schools_waterpoints": 0,
|
| 126 |
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"urban_landuse": 603,
|
| 127 |
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"water_surface": 1,
|
| 128 |
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"waterways": 0
|
| 129 |
+
},
|
| 130 |
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"label_counts": {
|
| 131 |
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"vector_label": 0,
|
| 132 |
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"disease_label": 16,
|
| 133 |
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"intermediate_host_label": 0,
|
| 134 |
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"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
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"license_flags": {
|
| 142 |
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"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
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"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
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"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
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"weak_labels": "presence_and_survey_biased"
|
| 146 |
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},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0011_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0011_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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"lon": -15.621184542300163,
|
| 17 |
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"lat": 13.483865039418392
|
| 18 |
+
},
|
| 19 |
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"bbox": [
|
| 20 |
+
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|
| 21 |
+
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|
| 22 |
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|
| 23 |
+
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|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
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"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
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"bottom_left: Mapbox satellite context",
|
| 29 |
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"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0011_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "af945bc9b910f84702c86c653f3559eccd6a8da1e9a0c2f059cd4aede45b4d4a",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0011_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0011_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0011_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0011_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0011_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0011_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0011_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
+
"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
+
"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
+
"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
+
"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
+
"mapbox_available": true,
|
| 84 |
+
"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
+
"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
+
"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 53.4243,
|
| 91 |
+
"repair_attempts": 0
|
| 92 |
+
},
|
| 93 |
+
"numeric_features": {
|
| 94 |
+
"raster_stats": {
|
| 95 |
+
"rainfall_chirps": {
|
| 96 |
+
"valid_pixels": 262144,
|
| 97 |
+
"min": -9991.1543,
|
| 98 |
+
"max": -3738.6838,
|
| 99 |
+
"mean": -7401.3652,
|
| 100 |
+
"median": -7750.9209,
|
| 101 |
+
"p90": -4634.4028
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
+
"osm_counts": {
|
| 123 |
+
"health_facilities": 1,
|
| 124 |
+
"major_roads": 12,
|
| 125 |
+
"schools_waterpoints": 2,
|
| 126 |
+
"urban_landuse": 101,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 5,
|
| 132 |
+
"disease_label": 1,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0012_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0012_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
+
"pixels": 512,
|
| 15 |
+
"center": {
|
| 16 |
+
"lon": -15.619431464607684,
|
| 17 |
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"lat": 13.549969802089278
|
| 18 |
+
},
|
| 19 |
+
"bbox": [
|
| 20 |
+
-15.642558215809032,
|
| 21 |
+
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|
| 22 |
+
-15.596304713406337,
|
| 23 |
+
13.572452842237245
|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0012_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "7fa0d8d3707d45ddeb9623abed39b96eaaee351efc3e4c68c980dbfa567e1c6c",
|
| 34 |
+
"width": 1024,
|
| 35 |
+
"height": 1024
|
| 36 |
+
},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0012_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0012_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0012_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0012_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0012_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0012_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0012_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
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"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
+
"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
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"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
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},
|
| 80 |
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"quality": {
|
| 81 |
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"evidence_packet_available": true,
|
| 82 |
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"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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"mapbox_target_visible": true,
|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 65.7637,
|
| 91 |
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"repair_attempts": 0
|
| 92 |
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},
|
| 93 |
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"numeric_features": {
|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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"min": 0.0,
|
| 98 |
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|
| 99 |
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|
| 100 |
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"median": 0.0,
|
| 101 |
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|
| 102 |
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},
|
| 103 |
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"land_cover_worldcover": {
|
| 104 |
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"valid_pixels": 0
|
| 105 |
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},
|
| 106 |
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"population_worldpop": {
|
| 107 |
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"valid_pixels": 0
|
| 108 |
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},
|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
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"valid_pixels": 0
|
| 111 |
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},
|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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|
| 114 |
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},
|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
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|
| 117 |
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},
|
| 118 |
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"jrc_gsw_extent": {
|
| 119 |
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|
| 120 |
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}
|
| 121 |
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},
|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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},
|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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}
|
| 136 |
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},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0013_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0013_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
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"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
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"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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"lon": -15.626235961696372,
|
| 17 |
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"lat": 13.565960035643759
|
| 18 |
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},
|
| 19 |
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"bbox": [
|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
+
],
|
| 25 |
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"panel_order": [
|
| 26 |
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"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
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"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
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"bottom_left: Mapbox satellite context",
|
| 29 |
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"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0013_label_positive_jitter_packet.png",
|
| 33 |
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"sha256": "1960f62a551865b6ba125a71388a4719d54919c37fb467301d9b6b8ba4f52664",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
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"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0013_label_positive_jitter",
|
| 40 |
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"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0013_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0013_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0013_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0013_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0013_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0013_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
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"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
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"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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},
|
| 56 |
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"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
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"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
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"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
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],
|
| 68 |
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"map_disease": [
|
| 69 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
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],
|
| 72 |
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"map_vector": [
|
| 73 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
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]
|
| 75 |
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}
|
| 76 |
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},
|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
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},
|
| 80 |
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"quality": {
|
| 81 |
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"evidence_packet_available": true,
|
| 82 |
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"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
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| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
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|
| 91 |
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| 92 |
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| 93 |
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| 94 |
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| 95 |
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| 96 |
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| 98 |
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| 99 |
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| 100 |
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|
| 101 |
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|
| 102 |
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},
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| 103 |
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|
| 104 |
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| 105 |
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|
| 106 |
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"population_worldpop": {
|
| 107 |
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"valid_pixels": 0
|
| 108 |
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|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
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|
| 111 |
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|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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|
| 114 |
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|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
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|
| 117 |
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|
| 118 |
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"jrc_gsw_extent": {
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| 119 |
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| 120 |
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|
| 121 |
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},
|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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},
|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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| 137 |
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|
| 138 |
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"tier": "weak_label_positive",
|
| 139 |
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"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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"weak_labels": "presence_and_survey_biased"
|
| 146 |
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},
|
| 147 |
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"sampling": {
|
| 148 |
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"sample_type": "label_positive_jitter",
|
| 149 |
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"sampler_version": "stratified-v0.1"
|
| 150 |
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}
|
| 151 |
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}
|
sidecars/farafenni_malaria/farafenni_malaria_s0014_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
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"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
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"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
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"chip_id": "farafenni_malaria_s0014_label_positive_jitter",
|
| 6 |
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"aoi_id": "farafenni_malaria",
|
| 7 |
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"split": "validation",
|
| 8 |
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"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
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"primary_disease": "malaria",
|
| 10 |
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"country": "The Gambia",
|
| 11 |
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"name": "Farafenni, The Gambia",
|
| 12 |
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"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
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"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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"lon": -15.635880777728019,
|
| 17 |
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"lat": 13.533976719803702
|
| 18 |
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},
|
| 19 |
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"bbox": [
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| 20 |
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|
| 21 |
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|
| 22 |
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| 23 |
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|
| 24 |
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],
|
| 25 |
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"panel_order": [
|
| 26 |
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|
| 27 |
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|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0014_label_positive_jitter_packet.png",
|
| 33 |
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"sha256": "0e4b6bcb4345e4f82f69a08dcb41379ddb1b53f13453bc7073b03347b45760ae",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
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"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0014_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0014_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0014_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0014_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0014_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0014_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0014_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
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"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
+
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|
| 67 |
+
],
|
| 68 |
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"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
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"evidence_packet_available": true,
|
| 82 |
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"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 57.9792,
|
| 91 |
+
"repair_attempts": 0
|
| 92 |
+
},
|
| 93 |
+
"numeric_features": {
|
| 94 |
+
"raster_stats": {
|
| 95 |
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"rainfall_chirps": {
|
| 96 |
+
"valid_pixels": 262144,
|
| 97 |
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"min": -2692.1038,
|
| 98 |
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"max": 0.0,
|
| 99 |
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"mean": -405.6111,
|
| 100 |
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"median": 0.0,
|
| 101 |
+
"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
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"valid_pixels": 0
|
| 114 |
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},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
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"osm_counts": {
|
| 123 |
+
"health_facilities": 1,
|
| 124 |
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"major_roads": 41,
|
| 125 |
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"schools_waterpoints": 1,
|
| 126 |
+
"urban_landuse": 113,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 11,
|
| 132 |
+
"disease_label": 6,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0015_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0015_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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"lon": -15.529893643118013,
|
| 17 |
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"lat": 13.53971626553658
|
| 18 |
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},
|
| 19 |
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"bbox": [
|
| 20 |
+
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|
| 21 |
+
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|
| 22 |
+
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|
| 23 |
+
13.562199305684548
|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0015_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "eb8943f6a408a1329e36a14dd7007a84fb3000994cf050ca59c00afbbe06f5f4",
|
| 34 |
+
"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0015_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0015_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0015_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0015_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0015_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0015_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0015_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
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"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
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"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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},
|
| 56 |
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"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
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"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
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],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
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}
|
| 76 |
+
},
|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
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},
|
| 80 |
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"quality": {
|
| 81 |
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"evidence_packet_available": true,
|
| 82 |
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"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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"mapbox_target_visible": true,
|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 58.9174,
|
| 91 |
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"repair_attempts": 0
|
| 92 |
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},
|
| 93 |
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"numeric_features": {
|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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"p90": 0.0
|
| 102 |
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},
|
| 103 |
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"land_cover_worldcover": {
|
| 104 |
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"valid_pixels": 0
|
| 105 |
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},
|
| 106 |
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"population_worldpop": {
|
| 107 |
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"valid_pixels": 0
|
| 108 |
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},
|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
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"valid_pixels": 0
|
| 111 |
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},
|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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"valid_pixels": 0
|
| 114 |
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},
|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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},
|
| 122 |
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"osm_counts": {
|
| 123 |
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|
| 124 |
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"major_roads": 18,
|
| 125 |
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|
| 126 |
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"urban_landuse": 314,
|
| 127 |
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"water_surface": 0,
|
| 128 |
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"waterways": 0
|
| 129 |
+
},
|
| 130 |
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"label_counts": {
|
| 131 |
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"vector_label": 0,
|
| 132 |
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"disease_label": 15,
|
| 133 |
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"intermediate_host_label": 0,
|
| 134 |
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"disease_aggregate": 0
|
| 135 |
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}
|
| 136 |
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},
|
| 137 |
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"label_quality": {
|
| 138 |
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"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
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"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
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|
| 144 |
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"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
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"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0018_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
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"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
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|
| 4 |
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"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
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|
| 6 |
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|
| 7 |
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|
| 8 |
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|
| 9 |
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"primary_disease": "malaria",
|
| 10 |
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"country": "The Gambia",
|
| 11 |
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"name": "Farafenni, The Gambia",
|
| 12 |
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|
| 13 |
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|
| 14 |
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|
| 15 |
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|
| 16 |
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|
| 17 |
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| 18 |
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| 19 |
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|
| 20 |
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| 21 |
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| 22 |
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| 23 |
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| 24 |
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],
|
| 25 |
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"panel_order": [
|
| 26 |
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|
| 27 |
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|
| 28 |
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"bottom_left: Mapbox satellite context",
|
| 29 |
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"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
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],
|
| 31 |
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"image_packet": {
|
| 32 |
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"path": "image_packets/farafenni_malaria/farafenni_malaria_s0018_label_positive_jitter_packet.png",
|
| 33 |
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"sha256": "daaa23c911be69e2d7a60f57f9dc4333966795cc43dceff93f63a2b028a434e6",
|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0018_label_positive_jitter",
|
| 40 |
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|
| 41 |
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"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0018_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
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"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0018_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
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"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0018_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
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"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0018_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
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"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0018_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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|
| 53 |
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| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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| 66 |
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|
| 67 |
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|
| 68 |
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| 69 |
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| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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]
|
| 75 |
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|
| 76 |
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|
| 77 |
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| 78 |
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|
| 79 |
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|
| 80 |
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| 81 |
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| 82 |
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| 83 |
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| 84 |
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|
| 85 |
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| 86 |
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| 87 |
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| 88 |
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| 89 |
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| 90 |
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| 102 |
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|
| 110 |
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| 113 |
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|
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| 129 |
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|
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 138 |
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|
| 139 |
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| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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}
|
| 151 |
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}
|
sidecars/farafenni_malaria/farafenni_malaria_s0019_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
|
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|
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|
|
|
|
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|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
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|
|
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|
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|
|
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|
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|
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|
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|
|
|
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|
|
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|
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|
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|
|
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|
|
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|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
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|
|
|
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|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
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"chip_id": "farafenni_malaria_s0019_label_positive_jitter",
|
| 6 |
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"aoi_id": "farafenni_malaria",
|
| 7 |
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"split": "validation",
|
| 8 |
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"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
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"country": "The Gambia",
|
| 11 |
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"name": "Farafenni, The Gambia",
|
| 12 |
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"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
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"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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| 27 |
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| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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"image_packet": {
|
| 32 |
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"path": "image_packets/farafenni_malaria/farafenni_malaria_s0019_label_positive_jitter_packet.png",
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| 33 |
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"sha256": "6688cb7738592f3a16ca5ea9c43e8f13f470ab65ba4b191062d92064100e4e98",
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| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0019_label_positive_jitter/mapbox_metadata.json",
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| 46 |
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|
| 50 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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|
| 64 |
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"labels": {
|
| 65 |
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| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
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],
|
| 72 |
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|
| 73 |
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|
| 74 |
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]
|
| 75 |
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}
|
| 76 |
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},
|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
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|
| 80 |
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| 81 |
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|
| 82 |
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| 83 |
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| 86 |
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| 87 |
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| 88 |
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| 89 |
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|
| 90 |
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|
| 91 |
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| 92 |
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| 93 |
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| 94 |
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| 100 |
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| 101 |
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| 102 |
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},
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| 103 |
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|
| 104 |
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| 105 |
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| 106 |
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|
| 107 |
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| 108 |
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|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
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|
| 111 |
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|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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|
| 114 |
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},
|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
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"valid_pixels": 0
|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 123 |
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|
| 124 |
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|
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|
| 126 |
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|
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|
| 128 |
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| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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"label_quality": {
|
| 138 |
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"tier": "weak_label_positive",
|
| 139 |
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"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
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},
|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
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"weak_labels": "presence_and_survey_biased"
|
| 146 |
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},
|
| 147 |
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"sampling": {
|
| 148 |
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"sample_type": "label_positive_jitter",
|
| 149 |
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"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0022_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
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"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0022_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
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"name": "Farafenni, The Gambia",
|
| 12 |
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"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
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"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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|
| 17 |
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|
| 18 |
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},
|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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],
|
| 25 |
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"panel_order": [
|
| 26 |
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"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
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|
| 28 |
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"bottom_left: Mapbox satellite context",
|
| 29 |
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"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0022_label_positive_jitter_packet.png",
|
| 33 |
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"sha256": "ebeea9156e519d0702a09d4d335abbb23b86d932957cf224bf34ac19b3f5c168",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
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"source_assets": {
|
| 38 |
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"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
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"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0022_label_positive_jitter",
|
| 40 |
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"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0022_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
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"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0022_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
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"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0022_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
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"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0022_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
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"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0022_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
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"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0022_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
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"source_layers": {
|
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|
| 48 |
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|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
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"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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},
|
| 56 |
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"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
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"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
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|
| 67 |
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],
|
| 68 |
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"map_disease": [
|
| 69 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
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],
|
| 72 |
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"map_vector": [
|
| 73 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
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]
|
| 75 |
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}
|
| 76 |
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},
|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
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},
|
| 80 |
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"quality": {
|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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| 96 |
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|
| 97 |
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|
| 98 |
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"max": 0.0,
|
| 99 |
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"mean": -525.604,
|
| 100 |
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"median": 0.0,
|
| 101 |
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"p90": 0.0
|
| 102 |
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},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
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},
|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
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"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
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},
|
| 122 |
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"osm_counts": {
|
| 123 |
+
"health_facilities": 1,
|
| 124 |
+
"major_roads": 35,
|
| 125 |
+
"schools_waterpoints": 1,
|
| 126 |
+
"urban_landuse": 108,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
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"vector_label": 11,
|
| 132 |
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"disease_label": 5,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0023_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
|
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|
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|
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|
|
|
|
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|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0023_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
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"name": "Farafenni, The Gambia",
|
| 12 |
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"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
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"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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"lon": -15.61478936637819,
|
| 17 |
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"lat": 13.486339884032425
|
| 18 |
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},
|
| 19 |
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"bbox": [
|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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],
|
| 25 |
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"panel_order": [
|
| 26 |
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"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
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"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
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"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0023_label_positive_jitter_packet.png",
|
| 33 |
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"sha256": "7b9e89d6be61ffff8334483a623ebde667b5b9a3a8155f90633664739b33e195",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
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"source_assets": {
|
| 38 |
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"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0023_label_positive_jitter",
|
| 40 |
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"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0023_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0023_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0023_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0023_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0023_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0023_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
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"source_layers": {
|
| 47 |
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"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
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"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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},
|
| 56 |
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"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
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"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
+
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|
| 67 |
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],
|
| 68 |
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"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
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"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
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}
|
| 76 |
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},
|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
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},
|
| 80 |
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"quality": {
|
| 81 |
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"evidence_packet_available": true,
|
| 82 |
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"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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"mapbox_target_visible": true,
|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 52.5511,
|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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| 96 |
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| 97 |
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| 98 |
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| 99 |
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| 100 |
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|
| 101 |
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|
| 102 |
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| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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"population_worldpop": {
|
| 107 |
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"valid_pixels": 0
|
| 108 |
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|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
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|
| 111 |
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|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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"jrc_gsw_extent": {
|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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"waterways": 0
|
| 129 |
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},
|
| 130 |
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"label_counts": {
|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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}
|
| 136 |
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},
|
| 137 |
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"label_quality": {
|
| 138 |
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"tier": "weak_label_positive",
|
| 139 |
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"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
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},
|
| 141 |
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"license_flags": {
|
| 142 |
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"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
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"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
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"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
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"weak_labels": "presence_and_survey_biased"
|
| 146 |
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},
|
| 147 |
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"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0024_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
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|
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|
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|
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|
|
|
|
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|
|
|
|
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|
|
|
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|
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|
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| 1 |
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{
|
| 2 |
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| 3 |
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| 5 |
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|
| 6 |
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|
| 7 |
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|
| 8 |
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| 9 |
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|
| 10 |
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|
| 11 |
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| 12 |
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| 13 |
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| 27 |
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| 28 |
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|
| 29 |
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|
| 30 |
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],
|
| 31 |
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"image_packet": {
|
| 32 |
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"path": "image_packets/farafenni_malaria/farafenni_malaria_s0024_label_positive_jitter_packet.png",
|
| 33 |
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| 36 |
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| 37 |
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| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0024_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
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"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0024_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
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"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0024_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
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"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0024_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
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"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0024_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
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"source_layers": {
|
| 47 |
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|
| 48 |
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|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
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"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
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| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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},
|
| 56 |
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"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
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"labels": {
|
| 65 |
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|
| 66 |
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|
| 67 |
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],
|
| 68 |
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"map_disease": [
|
| 69 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
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],
|
| 72 |
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"map_vector": [
|
| 73 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
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}
|
| 76 |
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},
|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
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},
|
| 80 |
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"quality": {
|
| 81 |
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"evidence_packet_available": true,
|
| 82 |
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"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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"mapbox_target_visible": true,
|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 62.1218,
|
| 91 |
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|
| 92 |
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| 93 |
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"numeric_features": {
|
| 94 |
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| 95 |
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|
| 96 |
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| 97 |
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| 98 |
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| 99 |
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|
| 100 |
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|
| 101 |
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"p90": 0.0
|
| 102 |
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},
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| 103 |
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|
| 104 |
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|
| 105 |
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},
|
| 106 |
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"population_worldpop": {
|
| 107 |
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|
| 108 |
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|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
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|
| 111 |
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},
|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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|
| 114 |
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},
|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
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"valid_pixels": 0
|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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| 123 |
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|
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| 126 |
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|
| 128 |
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| 129 |
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},
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| 130 |
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"label_counts": {
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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}
|
| 136 |
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},
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| 137 |
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"label_quality": {
|
| 138 |
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"tier": "weak_label_positive",
|
| 139 |
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"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
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},
|
| 141 |
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"license_flags": {
|
| 142 |
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"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
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|
| 144 |
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"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
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"weak_labels": "presence_and_survey_biased"
|
| 146 |
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},
|
| 147 |
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"sampling": {
|
| 148 |
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"sample_type": "label_positive_jitter",
|
| 149 |
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"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0025_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0025_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
+
"lon": -15.548329655932228,
|
| 17 |
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"lat": 13.580985528456718
|
| 18 |
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},
|
| 19 |
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"bbox": [
|
| 20 |
+
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|
| 21 |
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|
| 22 |
+
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|
| 23 |
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13.603468568604686
|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
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"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
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"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
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"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0025_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "6da392d69e88f9a82f8b860d5dadd3932317b2fdc0229c12bf7a239175b3b4e0",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
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"source_assets": {
|
| 38 |
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"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0025_label_positive_jitter",
|
| 40 |
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"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0025_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
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"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0025_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
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"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0025_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0025_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
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"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0025_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
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"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0025_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
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"source_layers": {
|
| 47 |
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"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
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"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
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"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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},
|
| 56 |
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"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
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"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
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"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
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],
|
| 68 |
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"map_disease": [
|
| 69 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
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],
|
| 72 |
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"map_vector": [
|
| 73 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
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]
|
| 75 |
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}
|
| 76 |
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},
|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
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},
|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
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|
| 91 |
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|
| 92 |
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| 93 |
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| 94 |
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| 95 |
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| 96 |
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|
| 97 |
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|
| 98 |
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| 99 |
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|
| 100 |
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"median": 0.0,
|
| 101 |
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"p90": 0.0
|
| 102 |
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|
| 103 |
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"land_cover_worldcover": {
|
| 104 |
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"valid_pixels": 0
|
| 105 |
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},
|
| 106 |
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"population_worldpop": {
|
| 107 |
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|
| 108 |
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},
|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
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"valid_pixels": 0
|
| 111 |
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},
|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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"valid_pixels": 0
|
| 114 |
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},
|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
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"valid_pixels": 0
|
| 117 |
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|
| 118 |
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"jrc_gsw_extent": {
|
| 119 |
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|
| 120 |
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}
|
| 121 |
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},
|
| 122 |
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"osm_counts": {
|
| 123 |
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|
| 124 |
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"major_roads": 58,
|
| 125 |
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|
| 126 |
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|
| 127 |
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"water_surface": 0,
|
| 128 |
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"waterways": 0
|
| 129 |
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},
|
| 130 |
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"label_counts": {
|
| 131 |
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"vector_label": 4,
|
| 132 |
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"disease_label": 18,
|
| 133 |
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"intermediate_host_label": 0,
|
| 134 |
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"disease_aggregate": 0
|
| 135 |
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}
|
| 136 |
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},
|
| 137 |
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"label_quality": {
|
| 138 |
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"tier": "weak_label_positive",
|
| 139 |
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"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
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"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
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|
| 144 |
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"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
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"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0027_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
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|
|
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|
|
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|
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|
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|
|
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|
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|
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|
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|
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|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
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"chip_id": "farafenni_malaria_s0027_label_positive_jitter",
|
| 6 |
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"aoi_id": "farafenni_malaria",
|
| 7 |
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"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
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"country": "The Gambia",
|
| 11 |
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"name": "Farafenni, The Gambia",
|
| 12 |
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"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
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|
| 14 |
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|
| 15 |
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|
| 16 |
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|
| 17 |
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|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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],
|
| 25 |
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"panel_order": [
|
| 26 |
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"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
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|
| 28 |
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"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
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"image_packet": {
|
| 32 |
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"path": "image_packets/farafenni_malaria/farafenni_malaria_s0027_label_positive_jitter_packet.png",
|
| 33 |
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"sha256": "6fb036b1a8b12603714fc442fcc7f9e80da4511f0f2720002320c8c0ebe3c905",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
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"source_assets": {
|
| 38 |
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"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
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"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0027_label_positive_jitter",
|
| 40 |
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"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0027_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0027_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0027_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0027_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0027_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
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"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0027_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
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"source_layers": {
|
| 47 |
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|
| 48 |
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|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
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"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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},
|
| 56 |
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"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
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"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
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|
| 67 |
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],
|
| 68 |
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"map_disease": [
|
| 69 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
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],
|
| 72 |
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"map_vector": [
|
| 73 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
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]
|
| 75 |
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}
|
| 76 |
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},
|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
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},
|
| 80 |
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"quality": {
|
| 81 |
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"evidence_packet_available": true,
|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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| 93 |
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|
| 94 |
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| 95 |
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| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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"land_cover_worldcover": {
|
| 104 |
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|
| 105 |
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|
| 106 |
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"population_worldpop": {
|
| 107 |
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|
| 108 |
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|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
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|
| 111 |
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|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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|
| 114 |
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|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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},
|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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}
|
| 136 |
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|
| 137 |
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|
| 138 |
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"tier": "weak_label_positive",
|
| 139 |
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"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
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},
|
| 141 |
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"license_flags": {
|
| 142 |
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"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
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"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
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"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
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"weak_labels": "presence_and_survey_biased"
|
| 146 |
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},
|
| 147 |
+
"sampling": {
|
| 148 |
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"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0028_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
| 1 |
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{
|
| 2 |
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|
| 3 |
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
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|
| 8 |
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|
| 9 |
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|
| 10 |
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|
| 11 |
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"name": "Farafenni, The Gambia",
|
| 12 |
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| 13 |
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| 14 |
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| 15 |
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| 16 |
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| 17 |
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| 19 |
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| 20 |
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| 22 |
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| 23 |
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| 24 |
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| 25 |
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| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
+
],
|
| 31 |
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|
| 32 |
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"path": "image_packets/farafenni_malaria/farafenni_malaria_s0028_label_positive_jitter_packet.png",
|
| 33 |
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| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0028_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
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| 44 |
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|
| 45 |
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"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0028_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
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|
| 47 |
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| 48 |
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| 49 |
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|
| 50 |
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| 51 |
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| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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|
| 56 |
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|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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|
| 59 |
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|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
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"labels": {
|
| 65 |
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|
| 66 |
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|
| 67 |
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],
|
| 68 |
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|
| 69 |
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|
| 70 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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]
|
| 75 |
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}
|
| 76 |
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},
|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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|
| 79 |
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},
|
| 80 |
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"quality": {
|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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"mapbox_target_visible": true,
|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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|
| 90 |
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|
| 91 |
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| 92 |
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| 93 |
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|
| 94 |
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| 96 |
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|
| 98 |
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|
| 99 |
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| 100 |
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| 101 |
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|
| 102 |
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| 103 |
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|
| 104 |
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| 105 |
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| 106 |
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|
| 107 |
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| 108 |
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| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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| 120 |
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| 121 |
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| 128 |
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| 129 |
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| 130 |
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| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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"tier": "weak_label_positive",
|
| 139 |
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"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
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},
|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0029_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
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"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
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"chip_id": "farafenni_malaria_s0029_label_positive_jitter",
|
| 6 |
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"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
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"name": "Farafenni, The Gambia",
|
| 12 |
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"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
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"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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"lon": -15.471674780280695,
|
| 17 |
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"lat": 13.559297464646157
|
| 18 |
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},
|
| 19 |
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"bbox": [
|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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],
|
| 25 |
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"panel_order": [
|
| 26 |
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"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
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|
| 28 |
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|
| 29 |
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"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0029_label_positive_jitter_packet.png",
|
| 33 |
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"sha256": "b1f084c4060cefacbbe8e1c730aa61741f7af868694de61b2e424d63f9ec3056",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
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"source_assets": {
|
| 38 |
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"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
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"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0029_label_positive_jitter",
|
| 40 |
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"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0029_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
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"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0029_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
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"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0029_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
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"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0029_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
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"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0029_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
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"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0029_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
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"source_layers": {
|
| 47 |
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"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
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"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
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"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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},
|
| 56 |
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"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 66.8335,
|
| 91 |
+
"repair_attempts": 0
|
| 92 |
+
},
|
| 93 |
+
"numeric_features": {
|
| 94 |
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"raster_stats": {
|
| 95 |
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"rainfall_chirps": {
|
| 96 |
+
"valid_pixels": 262144,
|
| 97 |
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"min": 0.0,
|
| 98 |
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"max": 0.0,
|
| 99 |
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"mean": 0.0,
|
| 100 |
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"median": 0.0,
|
| 101 |
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"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
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"osm_counts": {
|
| 123 |
+
"health_facilities": 0,
|
| 124 |
+
"major_roads": 21,
|
| 125 |
+
"schools_waterpoints": 0,
|
| 126 |
+
"urban_landuse": 572,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 0,
|
| 132 |
+
"disease_label": 15,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0030_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0030_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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"lon": -15.500570509436645,
|
| 17 |
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"lat": 13.493367196276322
|
| 18 |
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},
|
| 19 |
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"bbox": [
|
| 20 |
+
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|
| 21 |
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|
| 22 |
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|
| 23 |
+
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|
| 24 |
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],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0030_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "cb8a99caec89f508f9efd7daa13a680c46d7e8a420a553d055fe91745408efc7",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
+
},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0030_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0030_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0030_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0030_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0030_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0030_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0030_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
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"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
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"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
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}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
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"evidence_packet_available": true,
|
| 82 |
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"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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"mapbox_target_visible": true,
|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 41.8838,
|
| 91 |
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"repair_attempts": 0
|
| 92 |
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},
|
| 93 |
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"numeric_features": {
|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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"median": 0.0,
|
| 101 |
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"p90": 0.0
|
| 102 |
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},
|
| 103 |
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"land_cover_worldcover": {
|
| 104 |
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"valid_pixels": 0
|
| 105 |
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},
|
| 106 |
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"population_worldpop": {
|
| 107 |
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"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
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"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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"valid_pixels": 0
|
| 114 |
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},
|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
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"valid_pixels": 0
|
| 117 |
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},
|
| 118 |
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"jrc_gsw_extent": {
|
| 119 |
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|
| 120 |
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}
|
| 121 |
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},
|
| 122 |
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"osm_counts": {
|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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"waterways": 1
|
| 129 |
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},
|
| 130 |
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"label_counts": {
|
| 131 |
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"vector_label": 2,
|
| 132 |
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"disease_label": 1,
|
| 133 |
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"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
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},
|
| 137 |
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"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0031_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
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"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
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|
| 8 |
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|
| 9 |
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|
| 10 |
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"country": "The Gambia",
|
| 11 |
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"name": "Farafenni, The Gambia",
|
| 12 |
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|
| 13 |
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|
| 14 |
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| 15 |
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| 16 |
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| 17 |
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|
| 18 |
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| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
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"path": "image_packets/farafenni_malaria/farafenni_malaria_s0031_label_positive_jitter_packet.png",
|
| 33 |
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"sha256": "91423c3b14705e82c51d40c31b567e9e7b0945129e77720e4b3342371a670f2c",
|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
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|
| 40 |
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"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0031_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
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"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0031_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
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"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0031_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0031_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
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"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0031_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
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"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0031_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
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"source_layers": {
|
| 47 |
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"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
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"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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},
|
| 56 |
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"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
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"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
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|
| 67 |
+
],
|
| 68 |
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"map_disease": [
|
| 69 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
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"map_vector": [
|
| 73 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
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}
|
| 76 |
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},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
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},
|
| 80 |
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"quality": {
|
| 81 |
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"evidence_packet_available": true,
|
| 82 |
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"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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"mapbox_target_visible": true,
|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 66.1157,
|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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},
|
| 103 |
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|
| 104 |
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|
| 105 |
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},
|
| 106 |
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"population_worldpop": {
|
| 107 |
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|
| 108 |
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},
|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
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|
| 111 |
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},
|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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|
| 114 |
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},
|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
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"valid_pixels": 0
|
| 117 |
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},
|
| 118 |
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"jrc_gsw_extent": {
|
| 119 |
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|
| 120 |
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|
| 121 |
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},
|
| 122 |
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|
| 123 |
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|
| 124 |
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|
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|
| 126 |
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|
| 127 |
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|
| 128 |
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| 129 |
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},
|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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}
|
| 136 |
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},
|
| 137 |
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"label_quality": {
|
| 138 |
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"tier": "weak_label_positive",
|
| 139 |
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"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
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},
|
| 141 |
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"license_flags": {
|
| 142 |
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"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
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|
| 144 |
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"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
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"weak_labels": "presence_and_survey_biased"
|
| 146 |
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},
|
| 147 |
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"sampling": {
|
| 148 |
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"sample_type": "label_positive_jitter",
|
| 149 |
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"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0035_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0035_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
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"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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"lon": -15.511478045809465,
|
| 17 |
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"lat": 13.515629804075237
|
| 18 |
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},
|
| 19 |
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"bbox": [
|
| 20 |
+
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|
| 21 |
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|
| 22 |
+
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|
| 23 |
+
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|
| 24 |
+
],
|
| 25 |
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"panel_order": [
|
| 26 |
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"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
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|
| 28 |
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"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0035_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "2fc2b21ce1fb297a88ad61d4868baaa5f58e3c3a5a5b7ede158bcffe2875efec",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0035_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0035_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0035_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0035_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0035_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0035_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0035_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
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"source_layers": {
|
| 47 |
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"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
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"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
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"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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|
| 56 |
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|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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],
|
| 68 |
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"map_disease": [
|
| 69 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
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"map_vector": [
|
| 73 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
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}
|
| 76 |
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},
|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
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},
|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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| 84 |
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| 85 |
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|
| 86 |
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|
| 87 |
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"mapbox_target_visible": true,
|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 54.351,
|
| 91 |
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|
| 92 |
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| 93 |
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| 94 |
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| 95 |
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| 96 |
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| 98 |
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| 100 |
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| 101 |
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|
| 102 |
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| 103 |
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|
| 104 |
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|
| 105 |
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| 106 |
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"population_worldpop": {
|
| 107 |
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| 108 |
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|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
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|
| 111 |
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|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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|
| 114 |
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|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
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"valid_pixels": 0
|
| 117 |
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|
| 118 |
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"jrc_gsw_extent": {
|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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"osm_counts": {
|
| 123 |
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|
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|
| 125 |
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|
| 126 |
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|
| 127 |
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"water_surface": 0,
|
| 128 |
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"waterways": 1
|
| 129 |
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},
|
| 130 |
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"label_counts": {
|
| 131 |
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"vector_label": 2,
|
| 132 |
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"disease_label": 0,
|
| 133 |
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"intermediate_host_label": 0,
|
| 134 |
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"disease_aggregate": 0
|
| 135 |
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|
| 136 |
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|
| 137 |
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"label_quality": {
|
| 138 |
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"tier": "weak_label_positive",
|
| 139 |
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"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
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},
|
| 141 |
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|
| 142 |
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"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
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|
| 144 |
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"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
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"weak_labels": "presence_and_survey_biased"
|
| 146 |
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},
|
| 147 |
+
"sampling": {
|
| 148 |
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"sample_type": "label_positive_jitter",
|
| 149 |
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"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0036_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
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|
|
|
|
|
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|
|
|
|
|
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|
|
|
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|
|
|
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|
|
|
|
|
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|
|
|
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|
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|
|
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|
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|
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|
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|
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|
|
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|
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|
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|
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|
|
|
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|
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|
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|
|
|
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|
|
|
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|
|
|
|
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|
|
|
|
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|
|
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|
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|
|
|
|
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|
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|
|
|
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|
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|
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|
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|
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|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
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"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
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"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
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"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
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"chip_id": "farafenni_malaria_s0036_label_positive_jitter",
|
| 6 |
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"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
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"country": "The Gambia",
|
| 11 |
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"name": "Farafenni, The Gambia",
|
| 12 |
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"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
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|
| 14 |
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"pixels": 512,
|
| 15 |
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|
| 16 |
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|
| 17 |
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"lat": 13.584115926065131
|
| 18 |
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| 19 |
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"bbox": [
|
| 20 |
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|
| 21 |
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|
| 22 |
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| 23 |
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| 24 |
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],
|
| 25 |
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"panel_order": [
|
| 26 |
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"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
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|
| 28 |
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"bottom_left: Mapbox satellite context",
|
| 29 |
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"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
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"image_packet": {
|
| 32 |
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"path": "image_packets/farafenni_malaria/farafenni_malaria_s0036_label_positive_jitter_packet.png",
|
| 33 |
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"sha256": "388d19e199637cb64ad4375f83b4c5b3e258febafc7ee333a8fa9dc6e9ab2b19",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
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"source_assets": {
|
| 38 |
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"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
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"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0036_label_positive_jitter",
|
| 40 |
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"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0036_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
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"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0036_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
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"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0036_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0036_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
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"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0036_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
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"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0036_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
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"source_layers": {
|
| 47 |
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|
| 48 |
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|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
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"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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|
| 53 |
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|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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},
|
| 56 |
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"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
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"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
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|
| 67 |
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],
|
| 68 |
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"map_disease": [
|
| 69 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
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],
|
| 72 |
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"map_vector": [
|
| 73 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
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]
|
| 75 |
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}
|
| 76 |
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},
|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
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},
|
| 80 |
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"quality": {
|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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| 93 |
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|
| 94 |
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| 95 |
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| 96 |
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|
| 97 |
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|
| 98 |
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| 99 |
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| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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},
|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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"tier": "weak_label_positive",
|
| 139 |
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"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
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},
|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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"weak_labels": "presence_and_survey_biased"
|
| 146 |
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},
|
| 147 |
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"sampling": {
|
| 148 |
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"sample_type": "label_positive_jitter",
|
| 149 |
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"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0037_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0037_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
+
"pixels": 512,
|
| 15 |
+
"center": {
|
| 16 |
+
"lon": -15.558168851730505,
|
| 17 |
+
"lat": 13.578563389371224
|
| 18 |
+
},
|
| 19 |
+
"bbox": [
|
| 20 |
+
-15.581298387653732,
|
| 21 |
+
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|
| 22 |
+
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|
| 23 |
+
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|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0037_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "fa4b93d4b91628d1d947abb28fe0a4814d8c11bd0b72bb7ee451853129a65631",
|
| 34 |
+
"width": 1024,
|
| 35 |
+
"height": 1024
|
| 36 |
+
},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0037_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0037_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0037_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0037_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0037_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0037_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0037_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
+
"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
+
"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
+
"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
+
"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
+
"mapbox_available": true,
|
| 84 |
+
"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
+
"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
+
"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 65.4236,
|
| 91 |
+
"repair_attempts": 0
|
| 92 |
+
},
|
| 93 |
+
"numeric_features": {
|
| 94 |
+
"raster_stats": {
|
| 95 |
+
"rainfall_chirps": {
|
| 96 |
+
"valid_pixels": 262144,
|
| 97 |
+
"min": 0.0,
|
| 98 |
+
"max": 0.0,
|
| 99 |
+
"mean": 0.0,
|
| 100 |
+
"median": 0.0,
|
| 101 |
+
"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
+
"osm_counts": {
|
| 123 |
+
"health_facilities": 0,
|
| 124 |
+
"major_roads": 126,
|
| 125 |
+
"schools_waterpoints": 1,
|
| 126 |
+
"urban_landuse": 942,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 4,
|
| 132 |
+
"disease_label": 22,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0042_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0042_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
+
"pixels": 512,
|
| 15 |
+
"center": {
|
| 16 |
+
"lon": -15.684218359185635,
|
| 17 |
+
"lat": 13.584476838216387
|
| 18 |
+
},
|
| 19 |
+
"bbox": [
|
| 20 |
+
-15.707348471820676,
|
| 21 |
+
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|
| 22 |
+
-15.661088246550595,
|
| 23 |
+
13.606959878364355
|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0042_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "5e9e8ba1218755e6c7c97532e722c6e13e614cc5b4ddab0fb426c4062f52d821",
|
| 34 |
+
"width": 1024,
|
| 35 |
+
"height": 1024
|
| 36 |
+
},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0042_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0042_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0042_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0042_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0042_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0042_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0042_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
+
"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
+
"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
+
"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
+
"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
+
"mapbox_available": true,
|
| 84 |
+
"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
+
"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
+
"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 68.1641,
|
| 91 |
+
"repair_attempts": 0
|
| 92 |
+
},
|
| 93 |
+
"numeric_features": {
|
| 94 |
+
"raster_stats": {
|
| 95 |
+
"rainfall_chirps": {
|
| 96 |
+
"valid_pixels": 262144,
|
| 97 |
+
"min": 0.0,
|
| 98 |
+
"max": 0.0,
|
| 99 |
+
"mean": 0.0,
|
| 100 |
+
"median": 0.0,
|
| 101 |
+
"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
+
"osm_counts": {
|
| 123 |
+
"health_facilities": 1,
|
| 124 |
+
"major_roads": 49,
|
| 125 |
+
"schools_waterpoints": 0,
|
| 126 |
+
"urban_landuse": 477,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 0,
|
| 132 |
+
"disease_label": 4,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0043_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0043_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
+
"pixels": 512,
|
| 15 |
+
"center": {
|
| 16 |
+
"lon": -15.631880610926633,
|
| 17 |
+
"lat": 13.578795875745616
|
| 18 |
+
},
|
| 19 |
+
"bbox": [
|
| 20 |
+
-15.655010169518004,
|
| 21 |
+
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|
| 22 |
+
-15.608751052335261,
|
| 23 |
+
13.601278915893584
|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0043_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "aecc1d1ddfbce2dd32941cfe499252766bedcd57e7f019c6f32a2f5f4ca743ec",
|
| 34 |
+
"width": 1024,
|
| 35 |
+
"height": 1024
|
| 36 |
+
},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0043_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0043_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0043_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0043_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0043_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0043_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0043_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
+
"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
+
"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
+
"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
+
"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
+
"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
+
"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 66.9741,
|
| 91 |
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"repair_attempts": 0
|
| 92 |
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},
|
| 93 |
+
"numeric_features": {
|
| 94 |
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"raster_stats": {
|
| 95 |
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"rainfall_chirps": {
|
| 96 |
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"valid_pixels": 262144,
|
| 97 |
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"min": 0.0,
|
| 98 |
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"max": 0.0,
|
| 99 |
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"mean": 0.0,
|
| 100 |
+
"median": 0.0,
|
| 101 |
+
"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
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"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
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}
|
| 121 |
+
},
|
| 122 |
+
"osm_counts": {
|
| 123 |
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"health_facilities": 1,
|
| 124 |
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"major_roads": 96,
|
| 125 |
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"schools_waterpoints": 1,
|
| 126 |
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"urban_landuse": 1023,
|
| 127 |
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"water_surface": 0,
|
| 128 |
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"waterways": 0
|
| 129 |
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},
|
| 130 |
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"label_counts": {
|
| 131 |
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"vector_label": 3,
|
| 132 |
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"disease_label": 8,
|
| 133 |
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"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0044_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
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"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0044_label_positive_jitter",
|
| 6 |
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"aoi_id": "farafenni_malaria",
|
| 7 |
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"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
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"primary_disease": "malaria",
|
| 10 |
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"country": "The Gambia",
|
| 11 |
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"name": "Farafenni, The Gambia",
|
| 12 |
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"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
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"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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"lon": -15.556606847794377,
|
| 17 |
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"lat": 13.45933269273243
|
| 18 |
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|
| 19 |
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"bbox": [
|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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],
|
| 25 |
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"panel_order": [
|
| 26 |
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"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
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|
| 28 |
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"bottom_left: Mapbox satellite context",
|
| 29 |
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"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
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],
|
| 31 |
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"image_packet": {
|
| 32 |
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"path": "image_packets/farafenni_malaria/farafenni_malaria_s0044_label_positive_jitter_packet.png",
|
| 33 |
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"sha256": "aeb54c49c870c3c3dc50907ec06ac3fb7db9cb60c0bab197dc0e4cfd8c1eca8a",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
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"source_assets": {
|
| 38 |
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"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
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"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0044_label_positive_jitter",
|
| 40 |
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"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0044_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
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"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0044_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
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"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0044_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
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"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0044_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
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"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0044_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
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"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0044_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
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"source_layers": {
|
| 47 |
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"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
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"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
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"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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},
|
| 56 |
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"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
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"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
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|
| 67 |
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],
|
| 68 |
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"map_disease": [
|
| 69 |
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|
| 70 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
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],
|
| 72 |
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"map_vector": [
|
| 73 |
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|
| 74 |
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]
|
| 75 |
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}
|
| 76 |
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},
|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
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},
|
| 80 |
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"quality": {
|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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| 87 |
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|
| 88 |
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| 89 |
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| 90 |
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| 91 |
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| 92 |
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| 93 |
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| 105 |
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| 106 |
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| 107 |
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| 108 |
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| 109 |
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|
| 110 |
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| 111 |
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|
| 112 |
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|
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|
| 116 |
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| 117 |
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| 120 |
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|
| 121 |
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|
| 122 |
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|
| 125 |
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| 126 |
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|
| 127 |
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|
| 128 |
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| 129 |
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| 130 |
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|
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| 134 |
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| 137 |
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|
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|
| 139 |
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| 140 |
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|
| 141 |
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|
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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}
|
| 151 |
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}
|
sidecars/farafenni_malaria/farafenni_malaria_s0045_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
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"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
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"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
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"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
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"chip_id": "farafenni_malaria_s0045_label_positive_jitter",
|
| 6 |
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"aoi_id": "farafenni_malaria",
|
| 7 |
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"split": "validation",
|
| 8 |
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"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
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"primary_disease": "malaria",
|
| 10 |
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"country": "The Gambia",
|
| 11 |
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"name": "Farafenni, The Gambia",
|
| 12 |
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"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
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|
| 14 |
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|
| 15 |
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|
| 16 |
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|
| 17 |
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|
| 18 |
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| 19 |
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| 20 |
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| 21 |
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| 22 |
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| 23 |
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|
| 24 |
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],
|
| 25 |
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"panel_order": [
|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0045_label_positive_jitter_packet.png",
|
| 33 |
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"sha256": "bef0148e60040119c89bc6ebe33d8993ea185d3ba3ad9436ea50c58ed0d8dcf0",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
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"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0045_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0045_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0045_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0045_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0045_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0045_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0045_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
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|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 66.3948,
|
| 91 |
+
"repair_attempts": 0
|
| 92 |
+
},
|
| 93 |
+
"numeric_features": {
|
| 94 |
+
"raster_stats": {
|
| 95 |
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"rainfall_chirps": {
|
| 96 |
+
"valid_pixels": 262144,
|
| 97 |
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"min": 0.0,
|
| 98 |
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"max": 0.0,
|
| 99 |
+
"mean": 0.0,
|
| 100 |
+
"median": 0.0,
|
| 101 |
+
"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
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"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
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"osm_counts": {
|
| 123 |
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"health_facilities": 0,
|
| 124 |
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"major_roads": 45,
|
| 125 |
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"schools_waterpoints": 0,
|
| 126 |
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"urban_landuse": 732,
|
| 127 |
+
"water_surface": 1,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 0,
|
| 132 |
+
"disease_label": 15,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0046_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0046_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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"lon": -15.636084889427737,
|
| 17 |
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"lat": 13.555173410148669
|
| 18 |
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},
|
| 19 |
+
"bbox": [
|
| 20 |
+
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|
| 21 |
+
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|
| 22 |
+
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|
| 23 |
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13.577656450296637
|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0046_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "8208695a347ebf3ff026e7a7cc1a6b9adb75fb6eeba017382e7f49e0326ed619",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
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"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0046_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0046_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0046_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0046_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0046_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0046_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0046_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
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"source_layers": {
|
| 47 |
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"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
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"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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},
|
| 56 |
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"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
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"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
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"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
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],
|
| 68 |
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"map_disease": [
|
| 69 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
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}
|
| 76 |
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},
|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
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},
|
| 80 |
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"quality": {
|
| 81 |
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"evidence_packet_available": true,
|
| 82 |
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"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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"mapbox_target_visible": true,
|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 63.939,
|
| 91 |
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"repair_attempts": 0
|
| 92 |
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},
|
| 93 |
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"numeric_features": {
|
| 94 |
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|
| 95 |
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"rainfall_chirps": {
|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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"p90": 0.0
|
| 102 |
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},
|
| 103 |
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"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
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},
|
| 106 |
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"population_worldpop": {
|
| 107 |
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"valid_pixels": 0
|
| 108 |
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},
|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
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"valid_pixels": 0
|
| 111 |
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},
|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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"valid_pixels": 0
|
| 114 |
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},
|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
+
"osm_counts": {
|
| 123 |
+
"health_facilities": 2,
|
| 124 |
+
"major_roads": 73,
|
| 125 |
+
"schools_waterpoints": 2,
|
| 126 |
+
"urban_landuse": 427,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 11,
|
| 132 |
+
"disease_label": 11,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0048_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0048_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
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"name": "Farafenni, The Gambia",
|
| 12 |
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"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
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"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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"lon": -15.446980157126882,
|
| 17 |
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"lat": 13.583967157566505
|
| 18 |
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},
|
| 19 |
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"bbox": [
|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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],
|
| 25 |
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"panel_order": [
|
| 26 |
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"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
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"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
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"path": "image_packets/farafenni_malaria/farafenni_malaria_s0048_label_positive_jitter_packet.png",
|
| 33 |
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"sha256": "e9b86f8ac3851b6d0ff05a1193efdead21b562d8049db78049f0337c700d739c",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
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"source_assets": {
|
| 38 |
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"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0048_label_positive_jitter",
|
| 40 |
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"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0048_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0048_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0048_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0048_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0048_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0048_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
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"source_layers": {
|
| 47 |
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"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
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"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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},
|
| 56 |
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"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
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"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
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|
| 67 |
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],
|
| 68 |
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"map_disease": [
|
| 69 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
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],
|
| 72 |
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"map_vector": [
|
| 73 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
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}
|
| 76 |
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},
|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
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},
|
| 80 |
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"quality": {
|
| 81 |
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"evidence_packet_available": true,
|
| 82 |
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"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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"mapbox_target_visible": true,
|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 65.0044,
|
| 91 |
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|
| 92 |
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| 93 |
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|
| 94 |
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|
| 95 |
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| 96 |
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| 97 |
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|
| 98 |
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"max": 0.0,
|
| 99 |
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| 100 |
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"median": 0.0,
|
| 101 |
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|
| 102 |
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},
|
| 103 |
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"land_cover_worldcover": {
|
| 104 |
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|
| 105 |
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},
|
| 106 |
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"population_worldpop": {
|
| 107 |
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"valid_pixels": 0
|
| 108 |
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},
|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
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"valid_pixels": 0
|
| 111 |
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},
|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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|
| 114 |
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|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
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|
| 117 |
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|
| 118 |
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"jrc_gsw_extent": {
|
| 119 |
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|
| 120 |
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}
|
| 121 |
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},
|
| 122 |
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"osm_counts": {
|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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"waterways": 0
|
| 129 |
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},
|
| 130 |
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"label_counts": {
|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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"disease_aggregate": 0
|
| 135 |
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}
|
| 136 |
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},
|
| 137 |
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"label_quality": {
|
| 138 |
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"tier": "weak_label_positive",
|
| 139 |
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"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
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},
|
| 141 |
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"license_flags": {
|
| 142 |
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"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
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"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
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"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
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"weak_labels": "presence_and_survey_biased"
|
| 146 |
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},
|
| 147 |
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"sampling": {
|
| 148 |
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"sample_type": "label_positive_jitter",
|
| 149 |
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"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0049_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0049_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
+
"pixels": 512,
|
| 15 |
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"center": {
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| 16 |
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| 27 |
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| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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"image_packet": {
|
| 32 |
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"path": "image_packets/farafenni_malaria/farafenni_malaria_s0049_label_positive_jitter_packet.png",
|
| 33 |
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"sha256": "a1111fd2f4351b308e00b02bf561651b0f1990d488dad3984cd90e9241e9f471",
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| 34 |
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|
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| 37 |
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| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0049_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
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"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0049_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
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|
| 45 |
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"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0049_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
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|
| 47 |
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| 48 |
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|
| 50 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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],
|
| 72 |
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"map_vector": [
|
| 73 |
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|
| 74 |
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]
|
| 75 |
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}
|
| 76 |
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|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
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|
| 80 |
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|
| 81 |
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| 82 |
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| 83 |
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| 84 |
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| 86 |
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| 87 |
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|
| 88 |
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| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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| 93 |
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| 94 |
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| 95 |
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| 96 |
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| 98 |
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| 99 |
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| 100 |
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| 101 |
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"p90": 0.0
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| 102 |
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},
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| 103 |
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|
| 104 |
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| 105 |
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},
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| 106 |
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| 107 |
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|
| 108 |
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| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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|
| 114 |
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|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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| 124 |
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|
| 125 |
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| 126 |
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|
| 127 |
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|
| 128 |
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| 129 |
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|
| 130 |
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"label_counts": {
|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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"label_quality": {
|
| 138 |
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"tier": "weak_label_positive",
|
| 139 |
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"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
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},
|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
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"weak_labels": "presence_and_survey_biased"
|
| 146 |
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},
|
| 147 |
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"sampling": {
|
| 148 |
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"sample_type": "label_positive_jitter",
|
| 149 |
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"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0050_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
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"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0050_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
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"name": "Farafenni, The Gambia",
|
| 12 |
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"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
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"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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|
| 17 |
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|
| 18 |
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},
|
| 19 |
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"bbox": [
|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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],
|
| 25 |
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"panel_order": [
|
| 26 |
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"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
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|
| 28 |
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"bottom_left: Mapbox satellite context",
|
| 29 |
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"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0050_label_positive_jitter_packet.png",
|
| 33 |
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"sha256": "69d31c67cdff6e99335a6fafe8aec832f64b735278c10597741bdefd25203365",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
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"source_assets": {
|
| 38 |
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"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
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"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0050_label_positive_jitter",
|
| 40 |
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"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0050_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
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"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0050_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
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"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0050_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0050_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
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"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0050_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
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"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0050_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
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"source_layers": {
|
| 47 |
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"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
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"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
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"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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},
|
| 56 |
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"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
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"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
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|
| 67 |
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],
|
| 68 |
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"map_disease": [
|
| 69 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
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],
|
| 72 |
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"map_vector": [
|
| 73 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
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]
|
| 75 |
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}
|
| 76 |
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},
|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
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},
|
| 80 |
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"quality": {
|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 67.1781,
|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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"raster_stats": {
|
| 95 |
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"rainfall_chirps": {
|
| 96 |
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"valid_pixels": 262144,
|
| 97 |
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"min": 0.0,
|
| 98 |
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"max": 0.0,
|
| 99 |
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"mean": 0.0,
|
| 100 |
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"median": 0.0,
|
| 101 |
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"p90": 0.0
|
| 102 |
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},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
+
"osm_counts": {
|
| 123 |
+
"health_facilities": 1,
|
| 124 |
+
"major_roads": 71,
|
| 125 |
+
"schools_waterpoints": 1,
|
| 126 |
+
"urban_landuse": 640,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 3,
|
| 132 |
+
"disease_label": 8,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0051_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
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|
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|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0051_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
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"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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"lon": -15.611114164233886,
|
| 17 |
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"lat": 13.484061790137895
|
| 18 |
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},
|
| 19 |
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"bbox": [
|
| 20 |
+
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|
| 21 |
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|
| 22 |
+
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|
| 23 |
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|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0051_label_positive_jitter_packet.png",
|
| 33 |
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"sha256": "17eb3d948397337eedcbd98f03f1d927de08b9314a47d4a3dc065e1807f0c390",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
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"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0051_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0051_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0051_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0051_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0051_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0051_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0051_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
+
"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
+
"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
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"sentinel_available": true,
|
| 83 |
+
"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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"mapbox_target_visible": true,
|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 52.5782,
|
| 91 |
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"repair_attempts": 0
|
| 92 |
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},
|
| 93 |
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"numeric_features": {
|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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"max": -3699.3376,
|
| 99 |
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"mean": -7385.6787,
|
| 100 |
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"median": -7750.9209,
|
| 101 |
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"p90": -4595.0566
|
| 102 |
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},
|
| 103 |
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"land_cover_worldcover": {
|
| 104 |
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"valid_pixels": 0
|
| 105 |
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},
|
| 106 |
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"population_worldpop": {
|
| 107 |
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"valid_pixels": 0
|
| 108 |
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},
|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
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"valid_pixels": 0
|
| 111 |
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},
|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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"valid_pixels": 0
|
| 114 |
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},
|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
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"valid_pixels": 0
|
| 117 |
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},
|
| 118 |
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"jrc_gsw_extent": {
|
| 119 |
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"valid_pixels": 0
|
| 120 |
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}
|
| 121 |
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},
|
| 122 |
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"osm_counts": {
|
| 123 |
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|
| 124 |
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|
| 125 |
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"schools_waterpoints": 2,
|
| 126 |
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"urban_landuse": 101,
|
| 127 |
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"water_surface": 0,
|
| 128 |
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"waterways": 0
|
| 129 |
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},
|
| 130 |
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"label_counts": {
|
| 131 |
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"vector_label": 5,
|
| 132 |
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"disease_label": 1,
|
| 133 |
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"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
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},
|
| 137 |
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"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0054_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
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"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
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"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
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"chip_id": "farafenni_malaria_s0054_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
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"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
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"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
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"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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|
| 17 |
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|
| 18 |
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| 19 |
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"bbox": [
|
| 20 |
+
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
+
],
|
| 25 |
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"panel_order": [
|
| 26 |
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"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
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"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0054_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "8cf64d63d67452bbbb5c5a80fbf93b2b6dc039a99c70900589a47a7932a64af4",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
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"source_assets": {
|
| 38 |
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"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0054_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0054_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
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"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0054_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0054_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0054_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0054_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0054_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
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"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 66.0991,
|
| 91 |
+
"repair_attempts": 0
|
| 92 |
+
},
|
| 93 |
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"numeric_features": {
|
| 94 |
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"raster_stats": {
|
| 95 |
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"rainfall_chirps": {
|
| 96 |
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"valid_pixels": 262144,
|
| 97 |
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"min": 0.0,
|
| 98 |
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"max": 0.0,
|
| 99 |
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"mean": 0.0,
|
| 100 |
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"median": 0.0,
|
| 101 |
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"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
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"valid_pixels": 0
|
| 114 |
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},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
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}
|
| 121 |
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},
|
| 122 |
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"osm_counts": {
|
| 123 |
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"health_facilities": 0,
|
| 124 |
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"major_roads": 85,
|
| 125 |
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"schools_waterpoints": 0,
|
| 126 |
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"urban_landuse": 700,
|
| 127 |
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"water_surface": 0,
|
| 128 |
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"waterways": 0
|
| 129 |
+
},
|
| 130 |
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"label_counts": {
|
| 131 |
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"vector_label": 4,
|
| 132 |
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"disease_label": 22,
|
| 133 |
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"intermediate_host_label": 0,
|
| 134 |
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"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0056_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0056_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
+
"pixels": 512,
|
| 15 |
+
"center": {
|
| 16 |
+
"lon": -15.566743188718927,
|
| 17 |
+
"lat": 13.561378994512422
|
| 18 |
+
},
|
| 19 |
+
"bbox": [
|
| 20 |
+
-15.589871050287465,
|
| 21 |
+
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|
| 22 |
+
-15.54361532715039,
|
| 23 |
+
13.58386203466039
|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0056_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "faca4d002ecdf0faf008023f7332bf9dd78a480b48a721f29970f26f16bb3670",
|
| 34 |
+
"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
+
},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0056_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0056_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0056_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0056_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0056_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0056_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0056_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
+
"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
+
"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
+
"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
+
"mapbox_available": true,
|
| 84 |
+
"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
+
"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
+
"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 59.5057,
|
| 91 |
+
"repair_attempts": 0
|
| 92 |
+
},
|
| 93 |
+
"numeric_features": {
|
| 94 |
+
"raster_stats": {
|
| 95 |
+
"rainfall_chirps": {
|
| 96 |
+
"valid_pixels": 262144,
|
| 97 |
+
"min": 0.0,
|
| 98 |
+
"max": 0.0,
|
| 99 |
+
"mean": 0.0,
|
| 100 |
+
"median": 0.0,
|
| 101 |
+
"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
+
"osm_counts": {
|
| 123 |
+
"health_facilities": 0,
|
| 124 |
+
"major_roads": 184,
|
| 125 |
+
"schools_waterpoints": 1,
|
| 126 |
+
"urban_landuse": 1046,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 4,
|
| 132 |
+
"disease_label": 13,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0057_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0057_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
+
"pixels": 512,
|
| 15 |
+
"center": {
|
| 16 |
+
"lon": -15.571103799525174,
|
| 17 |
+
"lat": 13.596285778525305
|
| 18 |
+
},
|
| 19 |
+
"bbox": [
|
| 20 |
+
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|
| 21 |
+
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|
| 22 |
+
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|
| 23 |
+
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|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0057_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "53a886524bb77d16caa391b4580c7c75639385e04c944d8c8b5f59ba88223e6a",
|
| 34 |
+
"width": 1024,
|
| 35 |
+
"height": 1024
|
| 36 |
+
},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0057_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0057_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0057_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0057_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0057_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0057_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0057_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
+
"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
+
"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
+
"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
+
"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
+
"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 66.6638,
|
| 91 |
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"repair_attempts": 0
|
| 92 |
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},
|
| 93 |
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"numeric_features": {
|
| 94 |
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"raster_stats": {
|
| 95 |
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"rainfall_chirps": {
|
| 96 |
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"valid_pixels": 262144,
|
| 97 |
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"min": 0.0,
|
| 98 |
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"max": 0.0,
|
| 99 |
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"mean": 0.0,
|
| 100 |
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"median": 0.0,
|
| 101 |
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"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
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"osm_counts": {
|
| 123 |
+
"health_facilities": 0,
|
| 124 |
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"major_roads": 363,
|
| 125 |
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"schools_waterpoints": 5,
|
| 126 |
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"urban_landuse": 1282,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 0,
|
| 132 |
+
"disease_label": 16,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0060_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0060_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
+
"pixels": 512,
|
| 15 |
+
"center": {
|
| 16 |
+
"lon": -15.618963054216215,
|
| 17 |
+
"lat": 13.536545627421548
|
| 18 |
+
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|
| 19 |
+
"bbox": [
|
| 20 |
+
-15.642088500258604,
|
| 21 |
+
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|
| 22 |
+
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|
| 23 |
+
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|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0060_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "48ff9efc3bde1f5f6fb51e116d0effd6fed4b395a2f97e8fc301189def90513a",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
+
},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0060_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0060_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0060_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0060_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0060_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0060_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0060_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
+
"mapbox_available": true,
|
| 84 |
+
"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
+
"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 60.4514,
|
| 91 |
+
"repair_attempts": 0
|
| 92 |
+
},
|
| 93 |
+
"numeric_features": {
|
| 94 |
+
"raster_stats": {
|
| 95 |
+
"rainfall_chirps": {
|
| 96 |
+
"valid_pixels": 262144,
|
| 97 |
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"min": -2178.3735,
|
| 98 |
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"max": 0.0,
|
| 99 |
+
"mean": -265.9815,
|
| 100 |
+
"median": 0.0,
|
| 101 |
+
"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
+
"osm_counts": {
|
| 123 |
+
"health_facilities": 1,
|
| 124 |
+
"major_roads": 64,
|
| 125 |
+
"schools_waterpoints": 1,
|
| 126 |
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"urban_landuse": 154,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 11,
|
| 132 |
+
"disease_label": 6,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
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"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0061_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0061_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
+
"pixels": 512,
|
| 15 |
+
"center": {
|
| 16 |
+
"lon": -15.634158919298883,
|
| 17 |
+
"lat": 13.581344912485493
|
| 18 |
+
},
|
| 19 |
+
"bbox": [
|
| 20 |
+
-15.657288726457157,
|
| 21 |
+
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|
| 22 |
+
-15.61102911214061,
|
| 23 |
+
13.603827952633461
|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0061_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "ae0d94ee5f2e449c11adaa3569f9b09789c2ddde3acbffdac47db1b2ada802f6",
|
| 34 |
+
"width": 1024,
|
| 35 |
+
"height": 1024
|
| 36 |
+
},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0061_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0061_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0061_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0061_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0061_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0061_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0061_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
+
"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
+
"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
+
"mapbox_available": true,
|
| 84 |
+
"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
+
"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
+
"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 67.0646,
|
| 91 |
+
"repair_attempts": 0
|
| 92 |
+
},
|
| 93 |
+
"numeric_features": {
|
| 94 |
+
"raster_stats": {
|
| 95 |
+
"rainfall_chirps": {
|
| 96 |
+
"valid_pixels": 262144,
|
| 97 |
+
"min": 0.0,
|
| 98 |
+
"max": 0.0,
|
| 99 |
+
"mean": 0.0,
|
| 100 |
+
"median": 0.0,
|
| 101 |
+
"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
+
"osm_counts": {
|
| 123 |
+
"health_facilities": 1,
|
| 124 |
+
"major_roads": 76,
|
| 125 |
+
"schools_waterpoints": 1,
|
| 126 |
+
"urban_landuse": 664,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 3,
|
| 132 |
+
"disease_label": 8,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0062_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0062_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
+
"pixels": 512,
|
| 15 |
+
"center": {
|
| 16 |
+
"lon": -15.705041014886156,
|
| 17 |
+
"lat": 13.557032410567608
|
| 18 |
+
},
|
| 19 |
+
"bbox": [
|
| 20 |
+
-15.728168453315071,
|
| 21 |
+
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|
| 22 |
+
-15.68191357645724,
|
| 23 |
+
13.579515450715576
|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0062_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "668b8d550b37f18737af205d7b577f12273b23a92ac8e7034e62ba34ef7fd92f",
|
| 34 |
+
"width": 1024,
|
| 35 |
+
"height": 1024
|
| 36 |
+
},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0062_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0062_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0062_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0062_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0062_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0062_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0062_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
+
"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
+
"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
+
"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
+
"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
+
"mapbox_available": true,
|
| 84 |
+
"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
+
"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
+
"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 59.5222,
|
| 91 |
+
"repair_attempts": 0
|
| 92 |
+
},
|
| 93 |
+
"numeric_features": {
|
| 94 |
+
"raster_stats": {
|
| 95 |
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"rainfall_chirps": {
|
| 96 |
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"valid_pixels": 262144,
|
| 97 |
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"min": 0.0,
|
| 98 |
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"max": 0.0,
|
| 99 |
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"mean": 0.0,
|
| 100 |
+
"median": 0.0,
|
| 101 |
+
"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
+
"osm_counts": {
|
| 123 |
+
"health_facilities": 0,
|
| 124 |
+
"major_roads": 33,
|
| 125 |
+
"schools_waterpoints": 0,
|
| 126 |
+
"urban_landuse": 68,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 12,
|
| 132 |
+
"disease_label": 0,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0066_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0066_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
+
"pixels": 512,
|
| 15 |
+
"center": {
|
| 16 |
+
"lon": -15.702951419075047,
|
| 17 |
+
"lat": 13.553348687235932
|
| 18 |
+
},
|
| 19 |
+
"bbox": [
|
| 20 |
+
-15.726078499010091,
|
| 21 |
+
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|
| 22 |
+
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|
| 23 |
+
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|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0066_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "3270e1a161c5ebc652f9c216123bebc9783fd9beccbb477972a1847c9f1628f3",
|
| 34 |
+
"width": 1024,
|
| 35 |
+
"height": 1024
|
| 36 |
+
},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0066_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0066_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0066_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0066_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0066_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0066_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0066_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
+
"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
+
"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
+
"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
+
"mapbox_available": true,
|
| 84 |
+
"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
+
"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
+
"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 60.2989,
|
| 91 |
+
"repair_attempts": 0
|
| 92 |
+
},
|
| 93 |
+
"numeric_features": {
|
| 94 |
+
"raster_stats": {
|
| 95 |
+
"rainfall_chirps": {
|
| 96 |
+
"valid_pixels": 262144,
|
| 97 |
+
"min": 0.0,
|
| 98 |
+
"max": 0.0,
|
| 99 |
+
"mean": 0.0,
|
| 100 |
+
"median": 0.0,
|
| 101 |
+
"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
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"osm_counts": {
|
| 123 |
+
"health_facilities": 0,
|
| 124 |
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"major_roads": 29,
|
| 125 |
+
"schools_waterpoints": 0,
|
| 126 |
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"urban_landuse": 62,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 12,
|
| 132 |
+
"disease_label": 0,
|
| 133 |
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"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0067_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0067_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
+
"pixels": 512,
|
| 15 |
+
"center": {
|
| 16 |
+
"lon": -15.604857094216179,
|
| 17 |
+
"lat": 13.542087730753376
|
| 18 |
+
},
|
| 19 |
+
"bbox": [
|
| 20 |
+
-15.627983078915193,
|
| 21 |
+
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|
| 22 |
+
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|
| 23 |
+
13.564570770901344
|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0067_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "cb422c50cb4fd01ca52614e9697a5a97d0965e885f0678fd6cddcc077bae834a",
|
| 34 |
+
"width": 1024,
|
| 35 |
+
"height": 1024
|
| 36 |
+
},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0067_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0067_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0067_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0067_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0067_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0067_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0067_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
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"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
+
"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
+
"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
+
"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
+
"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
+
"mapbox_available": true,
|
| 84 |
+
"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
+
"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 61.0805,
|
| 91 |
+
"repair_attempts": 0
|
| 92 |
+
},
|
| 93 |
+
"numeric_features": {
|
| 94 |
+
"raster_stats": {
|
| 95 |
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"rainfall_chirps": {
|
| 96 |
+
"valid_pixels": 262144,
|
| 97 |
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"min": -1070.0637,
|
| 98 |
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"max": 0.0,
|
| 99 |
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"mean": -64.7136,
|
| 100 |
+
"median": 0.0,
|
| 101 |
+
"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
+
"osm_counts": {
|
| 123 |
+
"health_facilities": 0,
|
| 124 |
+
"major_roads": 130,
|
| 125 |
+
"schools_waterpoints": 5,
|
| 126 |
+
"urban_landuse": 625,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 11,
|
| 132 |
+
"disease_label": 5,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0069_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0069_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
+
"center": {
|
| 16 |
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"lon": -15.56371493499713,
|
| 17 |
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"lat": 13.579347238491524
|
| 18 |
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},
|
| 19 |
+
"bbox": [
|
| 20 |
+
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|
| 21 |
+
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|
| 22 |
+
-15.540585322644475,
|
| 23 |
+
13.601830278639492
|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0069_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "7c76bdc67841a097c6f4b2f0867c08e74a44302264fdc1150eaa073483ffebf5",
|
| 34 |
+
"width": 1024,
|
| 35 |
+
"height": 1024
|
| 36 |
+
},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0069_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0069_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0069_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0069_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0069_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0069_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0069_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
+
"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
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"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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"mapbox_target_visible": true,
|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 66.5752,
|
| 91 |
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"repair_attempts": 0
|
| 92 |
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},
|
| 93 |
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"numeric_features": {
|
| 94 |
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|
| 95 |
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"rainfall_chirps": {
|
| 96 |
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"valid_pixels": 262144,
|
| 97 |
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"min": 0.0,
|
| 98 |
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"max": 0.0,
|
| 99 |
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|
| 100 |
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"median": 0.0,
|
| 101 |
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"p90": 0.0
|
| 102 |
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},
|
| 103 |
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"land_cover_worldcover": {
|
| 104 |
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"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
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},
|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
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"valid_pixels": 0
|
| 111 |
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},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
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"valid_pixels": 0
|
| 114 |
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},
|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
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"valid_pixels": 0
|
| 117 |
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},
|
| 118 |
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"jrc_gsw_extent": {
|
| 119 |
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"valid_pixels": 0
|
| 120 |
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}
|
| 121 |
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},
|
| 122 |
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"osm_counts": {
|
| 123 |
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|
| 124 |
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"major_roads": 202,
|
| 125 |
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|
| 126 |
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|
| 127 |
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"water_surface": 0,
|
| 128 |
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"waterways": 0
|
| 129 |
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},
|
| 130 |
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"label_counts": {
|
| 131 |
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"vector_label": 4,
|
| 132 |
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"disease_label": 25,
|
| 133 |
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"intermediate_host_label": 0,
|
| 134 |
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"disease_aggregate": 0
|
| 135 |
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}
|
| 136 |
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},
|
| 137 |
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"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0070_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
|
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|
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|
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|
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|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0070_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
+
"pixels": 512,
|
| 15 |
+
"center": {
|
| 16 |
+
"lon": -15.46070061601653,
|
| 17 |
+
"lat": 13.580023398067564
|
| 18 |
+
},
|
| 19 |
+
"bbox": [
|
| 20 |
+
-15.483830294302196,
|
| 21 |
+
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|
| 22 |
+
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|
| 23 |
+
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|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0070_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "720b40f3677b684d087fe28a1bb2cc87b0c7d1136e0118f8055e6d12f95e8601",
|
| 34 |
+
"width": 1024,
|
| 35 |
+
"height": 1024
|
| 36 |
+
},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0070_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0070_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0070_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0070_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0070_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0070_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0070_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
+
"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
+
"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
+
"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
+
"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
+
"mapbox_available": true,
|
| 84 |
+
"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
+
"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
+
"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 66.6717,
|
| 91 |
+
"repair_attempts": 0
|
| 92 |
+
},
|
| 93 |
+
"numeric_features": {
|
| 94 |
+
"raster_stats": {
|
| 95 |
+
"rainfall_chirps": {
|
| 96 |
+
"valid_pixels": 262144,
|
| 97 |
+
"min": 0.0,
|
| 98 |
+
"max": 0.0,
|
| 99 |
+
"mean": 0.0,
|
| 100 |
+
"median": 0.0,
|
| 101 |
+
"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
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"osm_counts": {
|
| 123 |
+
"health_facilities": 0,
|
| 124 |
+
"major_roads": 45,
|
| 125 |
+
"schools_waterpoints": 0,
|
| 126 |
+
"urban_landuse": 533,
|
| 127 |
+
"water_surface": 1,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 0,
|
| 132 |
+
"disease_label": 16,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0072_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0072_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
+
"pixels": 512,
|
| 15 |
+
"center": {
|
| 16 |
+
"lon": -15.62187228419476,
|
| 17 |
+
"lat": 13.546377423321857
|
| 18 |
+
},
|
| 19 |
+
"bbox": [
|
| 20 |
+
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|
| 21 |
+
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|
| 22 |
+
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|
| 23 |
+
13.568860463469825
|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0072_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "164ef42ce4606b141a32525d53100c4aed3c675ce8dffddbbaea68891dc54ab3",
|
| 34 |
+
"width": 1024,
|
| 35 |
+
"height": 1024
|
| 36 |
+
},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0072_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0072_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0072_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0072_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0072_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0072_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0072_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
+
"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
+
"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
+
"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
+
"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
+
"mapbox_available": true,
|
| 84 |
+
"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
+
"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
+
"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 63.6164,
|
| 91 |
+
"repair_attempts": 0
|
| 92 |
+
},
|
| 93 |
+
"numeric_features": {
|
| 94 |
+
"raster_stats": {
|
| 95 |
+
"rainfall_chirps": {
|
| 96 |
+
"valid_pixels": 262144,
|
| 97 |
+
"min": -212.211,
|
| 98 |
+
"max": 0.0,
|
| 99 |
+
"mean": -2.7125,
|
| 100 |
+
"median": 0.0,
|
| 101 |
+
"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
+
"osm_counts": {
|
| 123 |
+
"health_facilities": 1,
|
| 124 |
+
"major_roads": 116,
|
| 125 |
+
"schools_waterpoints": 3,
|
| 126 |
+
"urban_landuse": 558,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 11,
|
| 132 |
+
"disease_label": 13,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0073_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0073_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
+
"pixels": 512,
|
| 15 |
+
"center": {
|
| 16 |
+
"lon": -15.622006748221517,
|
| 17 |
+
"lat": 13.523599854463754
|
| 18 |
+
},
|
| 19 |
+
"bbox": [
|
| 20 |
+
-15.645130936959125,
|
| 21 |
+
13.501116814315786,
|
| 22 |
+
-15.59888255948391,
|
| 23 |
+
13.546082894611722
|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0073_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "2296371a98328bff583f635936f4377a822ceb9dd08820cc0c501e11733d7a2c",
|
| 34 |
+
"width": 1024,
|
| 35 |
+
"height": 1024
|
| 36 |
+
},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0073_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0073_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0073_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0073_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0073_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0073_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0073_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
+
"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
+
"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
+
"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
+
"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
+
"mapbox_available": true,
|
| 84 |
+
"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
+
"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
+
"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 57.0825,
|
| 91 |
+
"repair_attempts": 0
|
| 92 |
+
},
|
| 93 |
+
"numeric_features": {
|
| 94 |
+
"raster_stats": {
|
| 95 |
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"rainfall_chirps": {
|
| 96 |
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"valid_pixels": 262144,
|
| 97 |
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"min": -4767.269,
|
| 98 |
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"max": 0.0,
|
| 99 |
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"mean": -1268.3417,
|
| 100 |
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"median": -279.8924,
|
| 101 |
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"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
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"osm_counts": {
|
| 123 |
+
"health_facilities": 1,
|
| 124 |
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"major_roads": 40,
|
| 125 |
+
"schools_waterpoints": 1,
|
| 126 |
+
"urban_landuse": 103,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
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"label_counts": {
|
| 131 |
+
"vector_label": 7,
|
| 132 |
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"disease_label": 5,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0074_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0074_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
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"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
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"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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"lon": -15.597719437734035,
|
| 17 |
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"lat": 13.583592017216978
|
| 18 |
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},
|
| 19 |
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"bbox": [
|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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],
|
| 25 |
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"panel_order": [
|
| 26 |
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"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
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"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
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"bottom_left: Mapbox satellite context",
|
| 29 |
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"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
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"image_packet": {
|
| 32 |
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"path": "image_packets/farafenni_malaria/farafenni_malaria_s0074_label_positive_jitter_packet.png",
|
| 33 |
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"sha256": "efbc7c8a83e491be543596e8364e72d605e349d146fcedf656c70abb27d06135",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
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"source_assets": {
|
| 38 |
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"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0074_label_positive_jitter",
|
| 40 |
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"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0074_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
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"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0074_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0074_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0074_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0074_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
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"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0074_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
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"source_layers": {
|
| 47 |
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"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
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"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
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"jrc_gsw": {
|
| 51 |
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"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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},
|
| 56 |
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"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
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"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
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"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
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},
|
| 64 |
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"labels": {
|
| 65 |
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"gbif_vector": [
|
| 66 |
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|
| 67 |
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],
|
| 68 |
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"map_disease": [
|
| 69 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
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],
|
| 72 |
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"map_vector": [
|
| 73 |
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"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
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]
|
| 75 |
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}
|
| 76 |
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},
|
| 77 |
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"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
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"simsat_provider_repo": "SimSat"
|
| 79 |
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},
|
| 80 |
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"quality": {
|
| 81 |
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"evidence_packet_available": true,
|
| 82 |
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"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 66.767,
|
| 91 |
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| 92 |
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| 93 |
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| 94 |
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| 95 |
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| 98 |
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| 99 |
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| 100 |
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|
| 101 |
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| 102 |
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| 103 |
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|
| 104 |
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| 105 |
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| 106 |
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|
| 107 |
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| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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| 129 |
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},
|
| 130 |
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|
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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}
|
| 136 |
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|
| 137 |
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|
| 138 |
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"tier": "weak_label_positive",
|
| 139 |
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"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
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"weak_labels": "presence_and_survey_biased"
|
| 146 |
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},
|
| 147 |
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"sampling": {
|
| 148 |
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"sample_type": "label_positive_jitter",
|
| 149 |
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"sampler_version": "stratified-v0.1"
|
| 150 |
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}
|
| 151 |
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}
|
sidecars/farafenni_malaria/farafenni_malaria_s0075_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
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"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
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"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
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"chip_id": "farafenni_malaria_s0075_label_positive_jitter",
|
| 6 |
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"aoi_id": "farafenni_malaria",
|
| 7 |
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"split": "validation",
|
| 8 |
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"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
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"primary_disease": "malaria",
|
| 10 |
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"country": "The Gambia",
|
| 11 |
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"name": "Farafenni, The Gambia",
|
| 12 |
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"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
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"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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"lon": -15.630325853273519,
|
| 17 |
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"lat": 13.544533097611415
|
| 18 |
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},
|
| 19 |
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"bbox": [
|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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],
|
| 25 |
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"panel_order": [
|
| 26 |
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"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
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"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0075_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "3710a128071b5b444356c8ad4a8a148b1bd9546e4a82a74793302f729fbf286d",
|
| 34 |
+
"width": 1024,
|
| 35 |
+
"height": 1024
|
| 36 |
+
},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0075_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0075_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0075_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0075_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0075_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0075_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0075_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
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"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
+
"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
+
"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
+
"sentinel_available": true,
|
| 83 |
+
"mapbox_available": true,
|
| 84 |
+
"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
+
"sentinel_source": "sentinel-2b",
|
| 87 |
+
"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 61.4494,
|
| 91 |
+
"repair_attempts": 0
|
| 92 |
+
},
|
| 93 |
+
"numeric_features": {
|
| 94 |
+
"raster_stats": {
|
| 95 |
+
"rainfall_chirps": {
|
| 96 |
+
"valid_pixels": 262144,
|
| 97 |
+
"min": -581.0392,
|
| 98 |
+
"max": 0.0,
|
| 99 |
+
"mean": -19.3407,
|
| 100 |
+
"median": 0.0,
|
| 101 |
+
"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
+
"osm_counts": {
|
| 123 |
+
"health_facilities": 1,
|
| 124 |
+
"major_roads": 68,
|
| 125 |
+
"schools_waterpoints": 2,
|
| 126 |
+
"urban_landuse": 197,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 11,
|
| 132 |
+
"disease_label": 9,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0078_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0078_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
+
"pixels": 512,
|
| 15 |
+
"center": {
|
| 16 |
+
"lon": -15.632526921489683,
|
| 17 |
+
"lat": 13.552300393372915
|
| 18 |
+
},
|
| 19 |
+
"bbox": [
|
| 20 |
+
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|
| 21 |
+
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|
| 22 |
+
-15.609399943553363,
|
| 23 |
+
13.574783433520883
|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0078_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "1dce517338eeaca8eb83cd0b89dca6cf55b8aebeafbaa82d0771a43803100cba",
|
| 34 |
+
"width": 1024,
|
| 35 |
+
"height": 1024
|
| 36 |
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},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0078_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0078_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0078_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0078_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0078_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0078_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0078_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
+
"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
+
},
|
| 56 |
+
"osm": {
|
| 57 |
+
"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
+
"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
+
"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
+
"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
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"sentinel_available": true,
|
| 83 |
+
"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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"mapbox_target_visible": true,
|
| 88 |
+
"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
+
"sampling_strategy": "label_positive_jitter",
|
| 90 |
+
"packet_std": 63.8427,
|
| 91 |
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"repair_attempts": 0
|
| 92 |
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},
|
| 93 |
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"numeric_features": {
|
| 94 |
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"raster_stats": {
|
| 95 |
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"rainfall_chirps": {
|
| 96 |
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"valid_pixels": 262144,
|
| 97 |
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"min": 0.0,
|
| 98 |
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"max": 0.0,
|
| 99 |
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"mean": 0.0,
|
| 100 |
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"median": 0.0,
|
| 101 |
+
"p90": 0.0
|
| 102 |
+
},
|
| 103 |
+
"land_cover_worldcover": {
|
| 104 |
+
"valid_pixels": 0
|
| 105 |
+
},
|
| 106 |
+
"population_worldpop": {
|
| 107 |
+
"valid_pixels": 0
|
| 108 |
+
},
|
| 109 |
+
"jrc_gsw_occurrence": {
|
| 110 |
+
"valid_pixels": 0
|
| 111 |
+
},
|
| 112 |
+
"jrc_gsw_seasonality": {
|
| 113 |
+
"valid_pixels": 0
|
| 114 |
+
},
|
| 115 |
+
"jrc_gsw_transitions": {
|
| 116 |
+
"valid_pixels": 0
|
| 117 |
+
},
|
| 118 |
+
"jrc_gsw_extent": {
|
| 119 |
+
"valid_pixels": 0
|
| 120 |
+
}
|
| 121 |
+
},
|
| 122 |
+
"osm_counts": {
|
| 123 |
+
"health_facilities": 2,
|
| 124 |
+
"major_roads": 88,
|
| 125 |
+
"schools_waterpoints": 2,
|
| 126 |
+
"urban_landuse": 368,
|
| 127 |
+
"water_surface": 0,
|
| 128 |
+
"waterways": 0
|
| 129 |
+
},
|
| 130 |
+
"label_counts": {
|
| 131 |
+
"vector_label": 11,
|
| 132 |
+
"disease_label": 11,
|
| 133 |
+
"intermediate_host_label": 0,
|
| 134 |
+
"disease_aggregate": 0
|
| 135 |
+
}
|
| 136 |
+
},
|
| 137 |
+
"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0079_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0079_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
+
"timestamp": "2025-12-31T12:00:00Z",
|
| 13 |
+
"chip_size_km": 5.0,
|
| 14 |
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"pixels": 512,
|
| 15 |
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"center": {
|
| 16 |
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"lon": -15.588656905668055,
|
| 17 |
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"lat": 13.499357534625748
|
| 18 |
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},
|
| 19 |
+
"bbox": [
|
| 20 |
+
-15.611778743512648,
|
| 21 |
+
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|
| 22 |
+
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|
| 23 |
+
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|
| 24 |
+
],
|
| 25 |
+
"panel_order": [
|
| 26 |
+
"top_left: SimSat Sentinel-2 true-color RGB",
|
| 27 |
+
"top_right: SimSat Sentinel-2 false color NIR-red-green",
|
| 28 |
+
"bottom_left: Mapbox satellite context",
|
| 29 |
+
"bottom_right: aligned evidence overlay from ESA WorldCover, JRC water, CHIRPS rainfall, WorldPop, OSM, and weak labels"
|
| 30 |
+
],
|
| 31 |
+
"image_packet": {
|
| 32 |
+
"path": "image_packets/farafenni_malaria/farafenni_malaria_s0079_label_positive_jitter_packet.png",
|
| 33 |
+
"sha256": "5f8062b5918f0ddd99c528b83136d4a1f831fbd9c47c647553bb48a871219243",
|
| 34 |
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"width": 1024,
|
| 35 |
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"height": 1024
|
| 36 |
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},
|
| 37 |
+
"source_assets": {
|
| 38 |
+
"packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 39 |
+
"simsat_raw_dir": "simsat_raw/farafenni_malaria/farafenni_malaria_s0079_label_positive_jitter",
|
| 40 |
+
"sentinel_rgb": "simsat_raw/farafenni_malaria/farafenni_malaria_s0079_label_positive_jitter/sentinel_rgb.png",
|
| 41 |
+
"sentinel_false_color": "simsat_raw/farafenni_malaria/farafenni_malaria_s0079_label_positive_jitter/sentinel_false_color_nir_red_green.png",
|
| 42 |
+
"sentinel_bands": "simsat_raw/farafenni_malaria/farafenni_malaria_s0079_label_positive_jitter/sentinel_bands_red_green_blue_nir.npz",
|
| 43 |
+
"sentinel_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0079_label_positive_jitter/sentinel_metadata.json",
|
| 44 |
+
"mapbox_satellite": "simsat_raw/farafenni_malaria/farafenni_malaria_s0079_label_positive_jitter/mapbox_satellite.png",
|
| 45 |
+
"mapbox_metadata": "simsat_raw/farafenni_malaria/farafenni_malaria_s0079_label_positive_jitter/mapbox_metadata.json",
|
| 46 |
+
"source_layers": {
|
| 47 |
+
"rainfall_chirps": "data/raw/chirps/daily_v2_p05/2025/chirps-v2.0.2025.12.31.tif.gz",
|
| 48 |
+
"land_cover_worldcover": "data/raw/esa_worldcover/farafenni_gambia/farafenni_worldcover_2021_v200_map.tif",
|
| 49 |
+
"population_worldpop": "data/raw/worldpop/farafenni_gambia/farafenni_worldpop_2020_100m_arcgis.tif",
|
| 50 |
+
"jrc_gsw": {
|
| 51 |
+
"occurrence": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_occurrence_v1_4_2021.tif",
|
| 52 |
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"seasonality": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_seasonality_v1_4_2021.tif",
|
| 53 |
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"transitions": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_transitions_v1_4_2021.tif",
|
| 54 |
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"extent": "data/raw/jrc_gsw/farafenni_gambia/farafenni_gsw_extent_v1_4_2021.tif"
|
| 55 |
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},
|
| 56 |
+
"osm": {
|
| 57 |
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"health_facilities": "data/raw/osm/farafenni_gambia/osm_health_facilities_farafenni.overpass.json",
|
| 58 |
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"major_roads": "data/raw/osm/farafenni_gambia/osm_major_roads_farafenni.overpass.json",
|
| 59 |
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"schools_waterpoints": "data/raw/osm/farafenni_gambia/osm_schools_waterpoints_farafenni.overpass.json",
|
| 60 |
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"urban_landuse": "data/raw/osm/farafenni_gambia/osm_urban_landuse_farafenni.overpass.json",
|
| 61 |
+
"water_surface": "data/raw/osm/farafenni_gambia/osm_water_surface_farafenni.overpass.json",
|
| 62 |
+
"waterways": "data/raw/osm/farafenni_gambia/osm_waterways_farafenni.overpass.json"
|
| 63 |
+
},
|
| 64 |
+
"labels": {
|
| 65 |
+
"gbif_vector": [
|
| 66 |
+
"data/raw/map_gbif/farafenni_gambia/gbif_anopheles_farafenni_occurrences.csv"
|
| 67 |
+
],
|
| 68 |
+
"map_disease": [
|
| 69 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pf_pr_202406_farafenni.geojson",
|
| 70 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_pv_pr_202406_farafenni.geojson"
|
| 71 |
+
],
|
| 72 |
+
"map_vector": [
|
| 73 |
+
"data/raw/map_malariaatlas/farafenni_gambia/map_dominant_vector_surveys_201201_farafenni.geojson"
|
| 74 |
+
]
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"aoi_manifest": "data/manifests/farafenni_malaria_manifest.md",
|
| 78 |
+
"simsat_provider_repo": "SimSat"
|
| 79 |
+
},
|
| 80 |
+
"quality": {
|
| 81 |
+
"evidence_packet_available": true,
|
| 82 |
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"sentinel_available": true,
|
| 83 |
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"mapbox_available": true,
|
| 84 |
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"sentinel_cloud_cover_percent": 0.000309,
|
| 85 |
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"sentinel_datetime": "2025-11-14T11:37:35Z",
|
| 86 |
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"sentinel_source": "sentinel-2b",
|
| 87 |
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"mapbox_target_visible": true,
|
| 88 |
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"source_packet_type": "simsat_sentinel2_mapbox_plus_open_layer_evidence_packet",
|
| 89 |
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"sampling_strategy": "label_positive_jitter",
|
| 90 |
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"packet_std": 53.4307,
|
| 91 |
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"repair_attempts": 0
|
| 92 |
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},
|
| 93 |
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"numeric_features": {
|
| 94 |
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"raster_stats": {
|
| 95 |
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"rainfall_chirps": {
|
| 96 |
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|
| 97 |
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"min": -9615.248,
|
| 98 |
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"max": -519.8598,
|
| 99 |
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"mean": -5028.5845,
|
| 100 |
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"median": -5013.7114,
|
| 101 |
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"p90": -1501.0875
|
| 102 |
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},
|
| 103 |
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"land_cover_worldcover": {
|
| 104 |
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"valid_pixels": 0
|
| 105 |
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},
|
| 106 |
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"population_worldpop": {
|
| 107 |
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"valid_pixels": 0
|
| 108 |
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},
|
| 109 |
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"jrc_gsw_occurrence": {
|
| 110 |
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"valid_pixels": 0
|
| 111 |
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},
|
| 112 |
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"jrc_gsw_seasonality": {
|
| 113 |
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"valid_pixels": 0
|
| 114 |
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},
|
| 115 |
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"jrc_gsw_transitions": {
|
| 116 |
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"valid_pixels": 0
|
| 117 |
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},
|
| 118 |
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"jrc_gsw_extent": {
|
| 119 |
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"valid_pixels": 0
|
| 120 |
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}
|
| 121 |
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},
|
| 122 |
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"osm_counts": {
|
| 123 |
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"health_facilities": 1,
|
| 124 |
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"major_roads": 17,
|
| 125 |
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"schools_waterpoints": 2,
|
| 126 |
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"urban_landuse": 92,
|
| 127 |
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"water_surface": 0,
|
| 128 |
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"waterways": 1
|
| 129 |
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},
|
| 130 |
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"label_counts": {
|
| 131 |
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"vector_label": 6,
|
| 132 |
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"disease_label": 1,
|
| 133 |
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"intermediate_host_label": 0,
|
| 134 |
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"disease_aggregate": 0
|
| 135 |
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}
|
| 136 |
+
},
|
| 137 |
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"label_quality": {
|
| 138 |
+
"tier": "weak_label_positive",
|
| 139 |
+
"description": "Presence-only/vector/surveillance labels and ecological proxies; suitable for weak-supervision SFT, not calibrated epidemiological probability."
|
| 140 |
+
},
|
| 141 |
+
"license_flags": {
|
| 142 |
+
"mapbox_redistribution": "user_verified_for_project_use",
|
| 143 |
+
"sentinel_2": "copernicus_sentinel_open_data",
|
| 144 |
+
"open_data_layers": "source_specific_open_terms_apply",
|
| 145 |
+
"weak_labels": "presence_and_survey_biased"
|
| 146 |
+
},
|
| 147 |
+
"sampling": {
|
| 148 |
+
"sample_type": "label_positive_jitter",
|
| 149 |
+
"sampler_version": "stratified-v0.1"
|
| 150 |
+
}
|
| 151 |
+
}
|
sidecars/farafenni_malaria/farafenni_malaria_s0080_label_positive_jitter_sidecar.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "vectoros-chip-sidecar-v0.2",
|
| 3 |
+
"packet_schema_version": "vectoros-simsat-mapbox-packet-v0.1",
|
| 4 |
+
"run_id": "vectoros_vector_100k_simsat_20260506",
|
| 5 |
+
"chip_id": "farafenni_malaria_s0080_label_positive_jitter",
|
| 6 |
+
"aoi_id": "farafenni_malaria",
|
| 7 |
+
"split": "validation",
|
| 8 |
+
"disease_module": "mosquito_anopheles_malaria",
|
| 9 |
+
"primary_disease": "malaria",
|
| 10 |
+
"country": "The Gambia",
|
| 11 |
+
"name": "Farafenni, The Gambia",
|
| 12 |
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