Instructions to use aehrc/uniformer_base_tl_384 with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use aehrc/uniformer_base_tl_384 with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("feature-extraction", model="aehrc/uniformer_base_tl_384", trust_remote_code=True)# Load model directly from transformers import AutoModel model = AutoModel.from_pretrained("aehrc/uniformer_base_tl_384", trust_remote_code=True, device_map="auto") - Notebooks
- Google Colab
- Kaggle
Upload model
Browse files- README.md +199 -0
- config.json +54 -0
- model.safetensors +3 -0
- modelling_uniformer.py +412 -0
README.md
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---
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library_name: transformers
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tags: []
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---
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# Model Card for Model ID
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<!-- Provide a quick summary of what the model is/does. -->
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## Model Details
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### Model Description
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+
<!-- Provide a longer summary of what this model is. -->
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+
This is the model card of a 🤗 transformers model that has been pushed on the Hub. This model card has been automatically generated.
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- **Developed by:** [More Information Needed]
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- **Funded by [optional]:** [More Information Needed]
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- **Shared by [optional]:** [More Information Needed]
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- **Model type:** [More Information Needed]
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- **Language(s) (NLP):** [More Information Needed]
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- **License:** [More Information Needed]
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- **Finetuned from model [optional]:** [More Information Needed]
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### Model Sources [optional]
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<!-- Provide the basic links for the model. -->
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- **Repository:** [More Information Needed]
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- **Paper [optional]:** [More Information Needed]
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- **Demo [optional]:** [More Information Needed]
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## Uses
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<!-- Address questions around how the model is intended to be used, including the foreseeable users of the model and those affected by the model. -->
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### Direct Use
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<!-- This section is for the model use without fine-tuning or plugging into a larger ecosystem/app. -->
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[More Information Needed]
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### Downstream Use [optional]
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<!-- This section is for the model use when fine-tuned for a task, or when plugged into a larger ecosystem/app -->
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[More Information Needed]
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| 51 |
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### Out-of-Scope Use
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| 53 |
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<!-- This section addresses misuse, malicious use, and uses that the model will not work well for. -->
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[More Information Needed]
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## Bias, Risks, and Limitations
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<!-- This section is meant to convey both technical and sociotechnical limitations. -->
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[More Information Needed]
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### Recommendations
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| 65 |
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<!-- This section is meant to convey recommendations with respect to the bias, risk, and technical limitations. -->
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Users (both direct and downstream) should be made aware of the risks, biases and limitations of the model. More information needed for further recommendations.
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## How to Get Started with the Model
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Use the code below to get started with the model.
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[More Information Needed]
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## Training Details
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### Training Data
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<!-- This should link to a Dataset Card, perhaps with a short stub of information on what the training data is all about as well as documentation related to data pre-processing or additional filtering. -->
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[More Information Needed]
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### Training Procedure
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<!-- This relates heavily to the Technical Specifications. Content here should link to that section when it is relevant to the training procedure. -->
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#### Preprocessing [optional]
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[More Information Needed]
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#### Training Hyperparameters
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- **Training regime:** [More Information Needed] <!--fp32, fp16 mixed precision, bf16 mixed precision, bf16 non-mixed precision, fp16 non-mixed precision, fp8 mixed precision -->
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#### Speeds, Sizes, Times [optional]
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<!-- This section provides information about throughput, start/end time, checkpoint size if relevant, etc. -->
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[More Information Needed]
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## Evaluation
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<!-- This section describes the evaluation protocols and provides the results. -->
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### Testing Data, Factors & Metrics
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#### Testing Data
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<!-- This should link to a Dataset Card if possible. -->
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[More Information Needed]
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#### Factors
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<!-- These are the things the evaluation is disaggregating by, e.g., subpopulations or domains. -->
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[More Information Needed]
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#### Metrics
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<!-- These are the evaluation metrics being used, ideally with a description of why. -->
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[More Information Needed]
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### Results
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[More Information Needed]
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#### Summary
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## Model Examination [optional]
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<!-- Relevant interpretability work for the model goes here -->
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[More Information Needed]
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## Environmental Impact
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<!-- Total emissions (in grams of CO2eq) and additional considerations, such as electricity usage, go here. Edit the suggested text below accordingly -->
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Carbon emissions can be estimated using the [Machine Learning Impact calculator](https://mlco2.github.io/impact#compute) presented in [Lacoste et al. (2019)](https://arxiv.org/abs/1910.09700).
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- **Hardware Type:** [More Information Needed]
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- **Hours used:** [More Information Needed]
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- **Cloud Provider:** [More Information Needed]
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- **Compute Region:** [More Information Needed]
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- **Carbon Emitted:** [More Information Needed]
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## Technical Specifications [optional]
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### Model Architecture and Objective
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[More Information Needed]
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### Compute Infrastructure
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[More Information Needed]
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#### Hardware
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[More Information Needed]
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#### Software
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[More Information Needed]
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## Citation [optional]
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<!-- If there is a paper or blog post introducing the model, the APA and Bibtex information for that should go in this section. -->
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**BibTeX:**
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[More Information Needed]
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**APA:**
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[More Information Needed]
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## Glossary [optional]
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<!-- If relevant, include terms and calculations in this section that can help readers understand the model or model card. -->
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[More Information Needed]
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## More Information [optional]
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[More Information Needed]
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## Model Card Authors [optional]
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[More Information Needed]
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## Model Card Contact
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[More Information Needed]
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config.json
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| 1 |
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{
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| 2 |
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"_name_or_path": "/datasets/work/hb-mlaifsp-mm/work/checkpoints/uniformer_base_tl_384",
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| 3 |
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"architectures": [
|
| 4 |
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"UniFormerModel"
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| 5 |
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],
|
| 6 |
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"attention_probs_dropout_prob": 0.0,
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| 7 |
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"attn_drop_rate": 0.0,
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| 8 |
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"auto_map": {
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| 9 |
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"AutoModel": "modelling_uniformer.UniFormerModel"
|
| 10 |
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},
|
| 11 |
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"conv_stem": false,
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| 12 |
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"depth": [
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| 13 |
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5,
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| 14 |
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8,
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| 15 |
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20,
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| 16 |
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7
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| 17 |
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],
|
| 18 |
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"drop_path_rate": 0.3,
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| 19 |
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"drop_rate": 0.0,
|
| 20 |
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"embed_dim": [
|
| 21 |
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64,
|
| 22 |
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128,
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| 23 |
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320,
|
| 24 |
+
512
|
| 25 |
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],
|
| 26 |
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"encoder_stride": 16,
|
| 27 |
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"head_dim": 64,
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| 28 |
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"hidden_act": "gelu",
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| 29 |
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"hidden_dropout_prob": 0.0,
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| 30 |
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"hidden_size": 768,
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| 31 |
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"image_size": 384,
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| 32 |
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"in_chans": 3,
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| 33 |
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"initializer_range": 0.02,
|
| 34 |
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"intermediate_size": 3072,
|
| 35 |
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"layer_norm_eps": 1e-06,
|
| 36 |
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"mlp_ratio": 4,
|
| 37 |
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"model_type": "vit",
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| 38 |
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"num_attention_heads": 12,
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| 39 |
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"num_channels": 3,
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| 40 |
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"num_classes": 1000,
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| 41 |
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"num_hidden_layers": 12,
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| 42 |
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"patch_size": [
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4,
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2,
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| 45 |
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2,
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| 46 |
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2
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| 47 |
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],
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| 48 |
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"projection_size": null,
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| 49 |
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"qk_scale": null,
|
| 50 |
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"qkv_bias": true,
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| 51 |
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"representation_size": null,
|
| 52 |
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"torch_dtype": "float32",
|
| 53 |
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"transformers_version": "4.40.2"
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| 54 |
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}
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model.safetensors
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version https://git-lfs.github.com/spec/v1
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oid sha256:0571c333da6cbecab2e8f03af5ca2b87608c1a5e269fbb5b070e175f02e6fd34
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size 197150032
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modelling_uniformer.py
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|
| 1 |
+
from collections import OrderedDict
|
| 2 |
+
from functools import partial
|
| 3 |
+
from typing import Optional, Tuple, Union
|
| 4 |
+
from math import isqrt
|
| 5 |
+
|
| 6 |
+
import torch
|
| 7 |
+
import torch.nn as nn
|
| 8 |
+
from timm.models.layers import DropPath, to_2tuple, trunc_normal_
|
| 9 |
+
from transformers import ViTConfig
|
| 10 |
+
from transformers.modeling_outputs import ModelOutput
|
| 11 |
+
from transformers.modeling_utils import PreTrainedModel
|
| 12 |
+
from transformers.utils import logging
|
| 13 |
+
|
| 14 |
+
logger = logging.get_logger(__name__)
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
layer_scale = False
|
| 18 |
+
init_value = 1e-6
|
| 19 |
+
|
| 20 |
+
|
| 21 |
+
class Mlp(nn.Module):
|
| 22 |
+
def __init__(self, in_features, hidden_features=None, out_features=None, act_layer=nn.GELU, drop=0.):
|
| 23 |
+
super().__init__()
|
| 24 |
+
out_features = out_features or in_features
|
| 25 |
+
hidden_features = hidden_features or in_features
|
| 26 |
+
self.fc1 = nn.Linear(in_features, hidden_features)
|
| 27 |
+
self.act = act_layer()
|
| 28 |
+
self.fc2 = nn.Linear(hidden_features, out_features)
|
| 29 |
+
self.drop = nn.Dropout(drop)
|
| 30 |
+
|
| 31 |
+
def forward(self, x):
|
| 32 |
+
x = self.fc1(x)
|
| 33 |
+
x = self.act(x)
|
| 34 |
+
x = self.drop(x)
|
| 35 |
+
x = self.fc2(x)
|
| 36 |
+
x = self.drop(x)
|
| 37 |
+
return x
|
| 38 |
+
|
| 39 |
+
|
| 40 |
+
class CMlp(nn.Module):
|
| 41 |
+
def __init__(self, in_features, hidden_features=None, out_features=None, act_layer=nn.GELU, drop=0.):
|
| 42 |
+
super().__init__()
|
| 43 |
+
out_features = out_features or in_features
|
| 44 |
+
hidden_features = hidden_features or in_features
|
| 45 |
+
self.fc1 = nn.Conv2d(in_features, hidden_features, 1)
|
| 46 |
+
self.act = act_layer()
|
| 47 |
+
self.fc2 = nn.Conv2d(hidden_features, out_features, 1)
|
| 48 |
+
self.drop = nn.Dropout(drop)
|
| 49 |
+
|
| 50 |
+
def forward(self, x):
|
| 51 |
+
x = self.fc1(x)
|
| 52 |
+
x = self.act(x)
|
| 53 |
+
x = self.drop(x)
|
| 54 |
+
x = self.fc2(x)
|
| 55 |
+
x = self.drop(x)
|
| 56 |
+
return x
|
| 57 |
+
|
| 58 |
+
|
| 59 |
+
class Attention(nn.Module):
|
| 60 |
+
def __init__(self, dim, num_heads=8, qkv_bias=False, qk_scale=None, attn_drop=0., proj_drop=0.):
|
| 61 |
+
super().__init__()
|
| 62 |
+
self.num_heads = num_heads
|
| 63 |
+
head_dim = dim // num_heads
|
| 64 |
+
self.scale = qk_scale or head_dim ** -0.5
|
| 65 |
+
|
| 66 |
+
self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias)
|
| 67 |
+
self.attn_drop = nn.Dropout(attn_drop)
|
| 68 |
+
self.proj = nn.Linear(dim, dim)
|
| 69 |
+
self.proj_drop = nn.Dropout(proj_drop)
|
| 70 |
+
|
| 71 |
+
def forward(self, x):
|
| 72 |
+
B, N, C = x.shape
|
| 73 |
+
qkv = self.qkv(x).reshape(B, N, 3, self.num_heads, C // self.num_heads).permute(2, 0, 3, 1, 4)
|
| 74 |
+
q, k, v = qkv[0], qkv[1], qkv[2]
|
| 75 |
+
|
| 76 |
+
attn = (q @ k.transpose(-2, -1)) * self.scale
|
| 77 |
+
attn = attn.softmax(dim=-1)
|
| 78 |
+
attn = self.attn_drop(attn)
|
| 79 |
+
|
| 80 |
+
x = (attn @ v).transpose(1, 2).reshape(B, N, C)
|
| 81 |
+
x = self.proj(x)
|
| 82 |
+
x = self.proj_drop(x)
|
| 83 |
+
return x
|
| 84 |
+
|
| 85 |
+
|
| 86 |
+
class CBlock(nn.Module):
|
| 87 |
+
def __init__(self, dim, mlp_ratio=4., drop=0., drop_path=0., act_layer=nn.GELU):
|
| 88 |
+
super().__init__()
|
| 89 |
+
self.pos_embed = nn.Conv2d(dim, dim, 3, padding=1, groups=dim)
|
| 90 |
+
self.norm1 = nn.BatchNorm2d(dim)
|
| 91 |
+
self.conv1 = nn.Conv2d(dim, dim, 1)
|
| 92 |
+
self.conv2 = nn.Conv2d(dim, dim, 1)
|
| 93 |
+
self.attn = nn.Conv2d(dim, dim, 5, padding=2, groups=dim)
|
| 94 |
+
self.drop_path = DropPath(drop_path) if drop_path > 0. else nn.Identity()
|
| 95 |
+
self.norm2 = nn.BatchNorm2d(dim)
|
| 96 |
+
mlp_hidden_dim = int(dim * mlp_ratio)
|
| 97 |
+
self.mlp = CMlp(in_features=dim, hidden_features=mlp_hidden_dim, act_layer=act_layer, drop=drop)
|
| 98 |
+
|
| 99 |
+
def forward(self, x):
|
| 100 |
+
x = x + self.pos_embed(x)
|
| 101 |
+
x = x + self.module_1(x)
|
| 102 |
+
x = x + self.module_2(x)
|
| 103 |
+
return x
|
| 104 |
+
|
| 105 |
+
def module_1(self, x):
|
| 106 |
+
x = self.norm1(x.to(dtype=self.norm1.weight.dtype)) # Won't autocast to the dtype of the parameters of nn.BatchNorm2d.
|
| 107 |
+
x = self.conv1(x)
|
| 108 |
+
x = self.attn(x)
|
| 109 |
+
x = self.conv2(x)
|
| 110 |
+
x = self.drop_path(x)
|
| 111 |
+
return x
|
| 112 |
+
|
| 113 |
+
def module_2(self, x):
|
| 114 |
+
x = self.norm2(x.to(dtype=self.norm2.weight.dtype)) # Won't autocast to the dtype of the parameters of nn.BatchNorm2d.
|
| 115 |
+
x = self.mlp(x)
|
| 116 |
+
x = self.drop_path(x)
|
| 117 |
+
return x
|
| 118 |
+
|
| 119 |
+
class SABlock(nn.Module):
|
| 120 |
+
def __init__(self, dim, num_heads, mlp_ratio=4., qkv_bias=False, qk_scale=None, drop=0., attn_drop=0.,
|
| 121 |
+
drop_path=0., act_layer=nn.GELU, norm_layer=nn.LayerNorm):
|
| 122 |
+
super().__init__()
|
| 123 |
+
self.pos_embed = nn.Conv2d(dim, dim, 3, padding=1, groups=dim)
|
| 124 |
+
self.norm1 = norm_layer(dim)
|
| 125 |
+
self.attn = Attention(
|
| 126 |
+
dim,
|
| 127 |
+
num_heads=num_heads, qkv_bias=qkv_bias, qk_scale=qk_scale,
|
| 128 |
+
attn_drop=attn_drop, proj_drop=drop)
|
| 129 |
+
self.drop_path = DropPath(drop_path) if drop_path > 0. else nn.Identity()
|
| 130 |
+
self.norm2 = norm_layer(dim)
|
| 131 |
+
mlp_hidden_dim = int(dim * mlp_ratio)
|
| 132 |
+
self.mlp = Mlp(in_features=dim, hidden_features=mlp_hidden_dim, act_layer=act_layer, drop=drop)
|
| 133 |
+
global layer_scale
|
| 134 |
+
self.ls = layer_scale
|
| 135 |
+
if self.ls:
|
| 136 |
+
global init_value
|
| 137 |
+
print(f"Use layer_scale: {layer_scale}, init_values: {init_value}")
|
| 138 |
+
self.gamma_1 = nn.Parameter(init_value * torch.ones((dim)),requires_grad=True)
|
| 139 |
+
self.gamma_2 = nn.Parameter(init_value * torch.ones((dim)),requires_grad=True)
|
| 140 |
+
|
| 141 |
+
def forward(self, x):
|
| 142 |
+
x = x + self.pos_embed(x)
|
| 143 |
+
B, N, H, W = x.shape
|
| 144 |
+
x = x.flatten(2).transpose(1, 2)
|
| 145 |
+
if self.ls:
|
| 146 |
+
x = x + self.drop_path(self.gamma_1 * self.attn(self.norm1(x)))
|
| 147 |
+
x = x + self.drop_path(self.gamma_2 * self.mlp(self.norm2(x)))
|
| 148 |
+
else:
|
| 149 |
+
x = x + self.drop_path(self.attn(self.norm1(x)))
|
| 150 |
+
x = x + self.drop_path(self.mlp(self.norm2(x)))
|
| 151 |
+
x = x.transpose(1, 2).reshape(B, N, H, W)
|
| 152 |
+
return x
|
| 153 |
+
|
| 154 |
+
|
| 155 |
+
class HeadEmbedding(nn.Module):
|
| 156 |
+
def __init__(self, in_channels, out_channels):
|
| 157 |
+
super(HeadEmbedding, self).__init__()
|
| 158 |
+
|
| 159 |
+
self.proj = nn.Sequential(
|
| 160 |
+
nn.Conv2d(in_channels, out_channels // 2, kernel_size=(3, 3), stride=(2, 2), padding=(1, 1)),
|
| 161 |
+
nn.BatchNorm2d(out_channels // 2),
|
| 162 |
+
nn.GELU(),
|
| 163 |
+
nn.Conv2d(out_channels // 2, out_channels, kernel_size=(3, 3), stride=(2, 2), padding=(1, 1)),
|
| 164 |
+
nn.BatchNorm2d(out_channels),
|
| 165 |
+
)
|
| 166 |
+
|
| 167 |
+
def forward(self, x):
|
| 168 |
+
x = self.proj(x)
|
| 169 |
+
return x
|
| 170 |
+
|
| 171 |
+
|
| 172 |
+
class MiddleEmbedding(nn.Module):
|
| 173 |
+
def __init__(self, in_channels, out_channels):
|
| 174 |
+
super(MiddleEmbedding, self).__init__()
|
| 175 |
+
|
| 176 |
+
self.proj = nn.Sequential(
|
| 177 |
+
nn.Conv2d(in_channels, out_channels, kernel_size=(3, 3), stride=(2, 2), padding=(1, 1)),
|
| 178 |
+
nn.BatchNorm2d(out_channels),
|
| 179 |
+
)
|
| 180 |
+
|
| 181 |
+
def forward(self, x):
|
| 182 |
+
x = self.proj(x)
|
| 183 |
+
return x
|
| 184 |
+
|
| 185 |
+
|
| 186 |
+
class PatchEmbed(nn.Module):
|
| 187 |
+
def __init__(self, image_size=224, patch_size=16, in_chans=3, embed_dim=768):
|
| 188 |
+
super().__init__()
|
| 189 |
+
image_size = to_2tuple(image_size)
|
| 190 |
+
patch_size = to_2tuple(patch_size)
|
| 191 |
+
num_patches_height = image_size[0] // patch_size[0]
|
| 192 |
+
num_patches_width = image_size[1] // patch_size[1]
|
| 193 |
+
num_patches = num_patches_height * num_patches_width
|
| 194 |
+
self.image_size = image_size
|
| 195 |
+
self.patch_size = patch_size
|
| 196 |
+
self.num_patches = num_patches
|
| 197 |
+
|
| 198 |
+
self.proj = nn.Conv2d(in_chans, embed_dim, kernel_size=patch_size, stride=patch_size)
|
| 199 |
+
self.norm = nn.LayerNorm(embed_dim)
|
| 200 |
+
|
| 201 |
+
def forward(self, x):
|
| 202 |
+
_, _, H, W = x.shape
|
| 203 |
+
assert H == self.image_size[0] and W == self.image_size[1], \
|
| 204 |
+
f"Input image size ({H}*{W}) doesn't match model ({self.image_size[0]}*{self.image_size[1]})."
|
| 205 |
+
x = self.proj(x)
|
| 206 |
+
B, _, H, W = x.shape
|
| 207 |
+
x = x.flatten(2).transpose(1, 2)
|
| 208 |
+
x = self.norm(x)
|
| 209 |
+
x = x.reshape(B, H, W, -1).permute(0, 3, 1, 2).contiguous()
|
| 210 |
+
return x
|
| 211 |
+
|
| 212 |
+
|
| 213 |
+
class UniFormer(nn.Module):
|
| 214 |
+
def __init__(self, depth=[3, 4, 8, 3], image_size=224, in_chans=3, num_classes=1000, embed_dim=[64, 128, 320, 512],
|
| 215 |
+
head_dim=64, mlp_ratio=4., qkv_bias=True, qk_scale=None, representation_size=None, patch_size=[4, 2, 2, 2],
|
| 216 |
+
drop_rate=0., attn_drop_rate=0., drop_path_rate=0., conv_stem=False, layer_norm_eps=1e-6, **kwargs):
|
| 217 |
+
super().__init__()
|
| 218 |
+
self.num_classes = num_classes
|
| 219 |
+
self.num_features = self.embed_dim = embed_dim # num_features for consistency with other models
|
| 220 |
+
norm_layer = partial(nn.LayerNorm, eps=layer_norm_eps)
|
| 221 |
+
if conv_stem:
|
| 222 |
+
self.patch_embed1 = HeadEmbedding(in_channels=in_chans, out_channels=embed_dim[0])
|
| 223 |
+
self.patch_embed2 = MiddleEmbedding(in_channels=embed_dim[0], out_channels=embed_dim[1])
|
| 224 |
+
self.patch_embed3 = MiddleEmbedding(in_channels=embed_dim[1], out_channels=embed_dim[2])
|
| 225 |
+
self.patch_embed4 = MiddleEmbedding(in_channels=embed_dim[2], out_channels=embed_dim[3])
|
| 226 |
+
else:
|
| 227 |
+
self.patch_embed1 = PatchEmbed(
|
| 228 |
+
image_size=image_size, patch_size=patch_size[0], in_chans=in_chans, embed_dim=embed_dim[0])
|
| 229 |
+
self.patch_embed2 = PatchEmbed(
|
| 230 |
+
image_size=image_size // patch_size[0], patch_size=patch_size[1], in_chans=embed_dim[0], embed_dim=embed_dim[1])
|
| 231 |
+
self.patch_embed3 = PatchEmbed(
|
| 232 |
+
image_size=image_size // (patch_size[0]*patch_size[1]), patch_size=patch_size[2], in_chans=embed_dim[1], embed_dim=embed_dim[2])
|
| 233 |
+
self.patch_embed4 = PatchEmbed(
|
| 234 |
+
image_size=image_size // (patch_size[0]*patch_size[1]*patch_size[2]), patch_size=patch_size[3], in_chans=embed_dim[2], embed_dim=embed_dim[3])
|
| 235 |
+
|
| 236 |
+
self.pos_drop = nn.Dropout(p=drop_rate)
|
| 237 |
+
dpr = [x.item() for x in torch.linspace(0, drop_path_rate, sum(depth))] # stochastic depth decay rule
|
| 238 |
+
num_heads = [dim // head_dim for dim in embed_dim]
|
| 239 |
+
self.blocks1 = nn.ModuleList([
|
| 240 |
+
CBlock(dim=embed_dim[0], mlp_ratio=mlp_ratio, drop=drop_rate, drop_path=dpr[i])
|
| 241 |
+
for i in range(depth[0])])
|
| 242 |
+
self.blocks2 = nn.ModuleList([
|
| 243 |
+
CBlock(dim=embed_dim[1], mlp_ratio=mlp_ratio, drop=drop_rate, drop_path=dpr[i+depth[0]])
|
| 244 |
+
for i in range(depth[1])])
|
| 245 |
+
self.blocks3 = nn.ModuleList([
|
| 246 |
+
SABlock(
|
| 247 |
+
dim=embed_dim[2], num_heads=num_heads[2], mlp_ratio=mlp_ratio, qkv_bias=qkv_bias, qk_scale=qk_scale,
|
| 248 |
+
drop=drop_rate, attn_drop=attn_drop_rate, drop_path=dpr[i+depth[0]+depth[1]], norm_layer=norm_layer)
|
| 249 |
+
for i in range(depth[2])])
|
| 250 |
+
self.blocks4 = nn.ModuleList([
|
| 251 |
+
SABlock(
|
| 252 |
+
dim=embed_dim[3], num_heads=num_heads[3], mlp_ratio=mlp_ratio, qkv_bias=qkv_bias, qk_scale=qk_scale,
|
| 253 |
+
drop=drop_rate, attn_drop=attn_drop_rate, drop_path=dpr[i+depth[0]+depth[1]+depth[2]], norm_layer=norm_layer)
|
| 254 |
+
for i in range(depth[3])])
|
| 255 |
+
self.norm = nn.BatchNorm2d(embed_dim[-1])
|
| 256 |
+
|
| 257 |
+
# Representation layer
|
| 258 |
+
if representation_size:
|
| 259 |
+
self.num_features = representation_size
|
| 260 |
+
self.pre_logits = nn.Sequential(OrderedDict([
|
| 261 |
+
('fc', nn.Linear(embed_dim, representation_size)),
|
| 262 |
+
('act', nn.Tanh())
|
| 263 |
+
]))
|
| 264 |
+
else:
|
| 265 |
+
self.pre_logits = nn.Identity()
|
| 266 |
+
|
| 267 |
+
def forward_features(self, x):
|
| 268 |
+
x = self.patch_embed1(x)
|
| 269 |
+
x = self.pos_drop(x)
|
| 270 |
+
for blk in self.blocks1:
|
| 271 |
+
x = blk(x)
|
| 272 |
+
x = self.patch_embed2(x)
|
| 273 |
+
for blk in self.blocks2:
|
| 274 |
+
x = blk(x)
|
| 275 |
+
x = self.patch_embed3(x)
|
| 276 |
+
for blk in self.blocks3:
|
| 277 |
+
x = blk(x)
|
| 278 |
+
x = self.patch_embed4(x)
|
| 279 |
+
for blk in self.blocks4:
|
| 280 |
+
x = blk(x)
|
| 281 |
+
x = self.norm(x.to(dtype=self.norm.weight.dtype)) # Won't autocast to the dtype of the parameters of nn.BatchNorm2d.
|
| 282 |
+
x = self.pre_logits(x)
|
| 283 |
+
return x
|
| 284 |
+
|
| 285 |
+
def forward(self, x):
|
| 286 |
+
x = self.forward_features(x)
|
| 287 |
+
return x
|
| 288 |
+
|
| 289 |
+
|
| 290 |
+
class UniFormerPreTrainedModel(PreTrainedModel):
|
| 291 |
+
"""
|
| 292 |
+
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
|
| 293 |
+
models.
|
| 294 |
+
"""
|
| 295 |
+
|
| 296 |
+
config_class = ViTConfig
|
| 297 |
+
base_model_prefix = "vit"
|
| 298 |
+
main_input_name = "pixel_values"
|
| 299 |
+
|
| 300 |
+
def _init_weights(self, m):
|
| 301 |
+
if isinstance(m, nn.Linear):
|
| 302 |
+
trunc_normal_(m.weight, std=.02)
|
| 303 |
+
if isinstance(m, nn.Linear) and m.bias is not None:
|
| 304 |
+
nn.init.constant_(m.bias, 0)
|
| 305 |
+
elif isinstance(m, nn.LayerNorm):
|
| 306 |
+
nn.init.constant_(m.bias, 0)
|
| 307 |
+
nn.init.constant_(m.weight, 1.0)
|
| 308 |
+
|
| 309 |
+
|
| 310 |
+
class UniFormerProjectionHead(torch.nn.Module):
|
| 311 |
+
|
| 312 |
+
def __init__(self, config) -> None:
|
| 313 |
+
super().__init__()
|
| 314 |
+
|
| 315 |
+
# Layer normalisation before projection:
|
| 316 |
+
self.layer_norm = torch.nn.LayerNorm(config.embed_dim[-1], eps=config.layer_norm_eps)
|
| 317 |
+
|
| 318 |
+
# No bias as following layer normalisation with bias:
|
| 319 |
+
self.projection = torch.nn.Linear(config.embed_dim[-1], config.projection_size, bias=False)
|
| 320 |
+
|
| 321 |
+
|
| 322 |
+
def forward(self, x: torch.Tensor) -> torch.Tensor:
|
| 323 |
+
x = self.layer_norm(x)
|
| 324 |
+
x = self.projection(x)
|
| 325 |
+
return x
|
| 326 |
+
|
| 327 |
+
|
| 328 |
+
class UniFormerModel(UniFormerPreTrainedModel):
|
| 329 |
+
def __init__(self, config):
|
| 330 |
+
super().__init__(config)
|
| 331 |
+
|
| 332 |
+
self.uniformer = UniFormer(**vars(config))
|
| 333 |
+
|
| 334 |
+
# Initialize weights and apply final processing:
|
| 335 |
+
self.post_init()
|
| 336 |
+
|
| 337 |
+
def forward(
|
| 338 |
+
self,
|
| 339 |
+
pixel_values: Optional[torch.Tensor] = None,
|
| 340 |
+
output_hidden_states: Optional[bool] = None,
|
| 341 |
+
return_dict: Optional[bool] = None,
|
| 342 |
+
) -> Union[Tuple, ModelOutput]:
|
| 343 |
+
|
| 344 |
+
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
|
| 345 |
+
|
| 346 |
+
last_hidden_state = self.uniformer(pixel_values)
|
| 347 |
+
|
| 348 |
+
# Flatten h x w:
|
| 349 |
+
last_hidden_state = torch.flatten(last_hidden_state, 2)
|
| 350 |
+
|
| 351 |
+
# Permute last hidden state:
|
| 352 |
+
last_hidden_state = torch.permute(last_hidden_state, [0, 2, 1])
|
| 353 |
+
|
| 354 |
+
# return last_hidden_state
|
| 355 |
+
if not return_dict:
|
| 356 |
+
return last_hidden_state
|
| 357 |
+
|
| 358 |
+
return ModelOutput(last_hidden_state=last_hidden_state)
|
| 359 |
+
|
| 360 |
+
|
| 361 |
+
class MultiUniFormerWithProjectionHead(UniFormerPreTrainedModel):
|
| 362 |
+
def __init__(self, config):
|
| 363 |
+
super().__init__(config)
|
| 364 |
+
|
| 365 |
+
self.uniformer = UniFormer(**vars(config))
|
| 366 |
+
self.projection_head = UniFormerProjectionHead(config)
|
| 367 |
+
|
| 368 |
+
# Initialize weights and apply final processing:
|
| 369 |
+
self.post_init()
|
| 370 |
+
|
| 371 |
+
def forward(
|
| 372 |
+
self,
|
| 373 |
+
pixel_values: Optional[torch.Tensor] = None,
|
| 374 |
+
output_hidden_states: Optional[bool] = None,
|
| 375 |
+
return_dict: Optional[bool] = None,
|
| 376 |
+
) -> Union[Tuple, ModelOutput]:
|
| 377 |
+
|
| 378 |
+
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
|
| 379 |
+
|
| 380 |
+
# Flatten the batch and study_id dimensions:
|
| 381 |
+
assert len(pixel_values.shape) == 5, 'pixel_values must be B, S, C, H, W, where S is the max number of images for a study in the batch.'
|
| 382 |
+
last_hidden_state = self.uniformer(pixel_values.view(-1, *pixel_values.shape[2:]))
|
| 383 |
+
# last_hidden_state = self.uniformer(pixel_values.flatten(start_dim=0, end_dim=1))
|
| 384 |
+
|
| 385 |
+
# Flatten h x w:
|
| 386 |
+
last_hidden_state = torch.flatten(last_hidden_state, 2)
|
| 387 |
+
|
| 388 |
+
# Project the features for each spatial position to the decoder's hidden size:
|
| 389 |
+
projection = self.projection_head(torch.permute(last_hidden_state, [0, 2, 1]))
|
| 390 |
+
|
| 391 |
+
# Concatenate the features for each chest X-ray:
|
| 392 |
+
projection = projection.view(pixel_values.shape[0], -1, projection.shape[-1])
|
| 393 |
+
|
| 394 |
+
# Derive the attention mask from the pixel values:
|
| 395 |
+
mask = (pixel_values[:, :, 0, 0, 0] != 0.0)[:, :, None]
|
| 396 |
+
attention_mask = torch.ones(
|
| 397 |
+
[projection.shape[0], pixel_values.shape[1], projection.shape[1] // pixel_values.shape[1]],
|
| 398 |
+
dtype=torch.long,
|
| 399 |
+
device=mask.device,
|
| 400 |
+
)
|
| 401 |
+
attention_mask = attention_mask * mask
|
| 402 |
+
attention_mask = attention_mask.view(attention_mask.shape[0], -1)
|
| 403 |
+
|
| 404 |
+
if not return_dict:
|
| 405 |
+
return projection
|
| 406 |
+
|
| 407 |
+
return ModelOutput(last_hidden_state=projection, attention_mask=attention_mask)
|
| 408 |
+
|
| 409 |
+
|
| 410 |
+
if __name__ == '__main__':
|
| 411 |
+
y = PatchEmbed()
|
| 412 |
+
y(torch.randn(2, 3, 224, 224))
|